G2089204


Basic Information

Item Value
gene id G2089204
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 48615267 ~ 48617469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2389760
GTATATCAGAGTTACTATGAAGTATCTGAGGTATATCTACAGCCCAGAGTTACTATGAAGTATCTGAGGTATATCAGGGTTACTATGAAGTATCTGAGGTATATCTACAGCCCAGGGTTACTATGAAGTATCTGAGGTATATCAGGGTTACTATGAAGTATCTGAGGTATATCTACAGCCCAGAGTTACTATGAAGTATCTGAGGTATATCAGAGTTACTATGAAGTATCTGAGGTATATCTACAGCCCAG
>TU2389763
GTATATCAGAGTTACTATGAAGTATCTGAGGTATATCTACAGCCCAGAGTTACTATGAAGTATCTGAGGTATATCAGGGTTACTATGAAGTATCTGAGGTATATCTACAGCCCGGGGTTACTATGAAGTATCTGAGGTATATCTACAGCCCAGAGTTACTATGACGTATCTGAGGTATATCAGAGTTACTATGAAGTATCTGAGGTATATCAGGGTTACTATGAAGTATCTGAGGTATATCTACAGCCCAGGGTTACTATGAAGTATCTGAGGTATATCAGGGTTACTATGAAGTATCTGAGGTATATCTACAGCCCAGGGTTACTATGAAGTATCTGAGGTATATCAGGGTTACTATAAAGTATCTGAGGTATATCAGGGTTACTATGAAGTATCTGAGG
>TU2389762
ACTATGAAGTATCTAAGGTATATCTACAGCCCAGAGTTACTATGACGTATCTGAGGTATATCAGAGTTACTATGAAGTATCTGAGGTATATCAGGGTTACTATGAAGTATCTGAGGTATATCTACAGCCCAGGGTTACTATGAAGTATCTGAGGTATATCTACAGCCCAGGGTTACTATGAAGTATCTGAGGTATATCAGGGTTACTATGAAGTATCTGAGGTATATCTACAGCCCAGAGTTACTATGAAGTATCTGAGGTATATCAGAGTTACTATGAAGTATCTGAGGTATATCTACAGCCCAG
>TU2389761
ATCTACAGCCCAGAGTTACTATGACGTATCTGAGGTATATCAGGGTTACTATGAAGTATCTGAGGTATATCAGGGTTACTATGAAGTATCTGAGGTATATCTACAGCCCAGGGTTACTATGAAGTATCTGAGGTATATCTACAGCCCAGGGTTACTATGAAGTATCTGAGGTATATCAGGGTTACTATAAAGTATCTGAGGTATATCAGGGTTACTATGAAGTATCTGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2389760 False 251 lncRNA 0.38 2 48615267 48616007
TU2389763 False 401 lncRNA 0.39 3 48615267 48617469
TU2389762 False 306 lncRNA 0.39 2 48615574 48616007
TU2389761 True 231 lncRNA 0.39 2 48616817 48617469

Neighbor

gene id symbol gene type direction distance location
nars2 nars2 coding upstream 156828 48401253 ~ 48458439 (+)
tenm4 tenm4 coding upstream 296182 47640597 ~ 48319085 (+)
LOC118944690 NA coding upstream 1132233 47482390 ~ 47483034 (+)
LOC110513068 fam181b coding upstream 1538546 47074530 ~ 47076721 (+)
prcp prcp coding upstream 1558346 47020501 ~ 47056921 (+)
zmp:0000001236 LOC106581583 coding downstream 15903 48633372 ~ 48774681 (+)
trpc6b LOC106581586 coding downstream 472414 49089883 ~ 49186113 (+)
pgr LOC100846969 coding downstream 583979 49201448 ~ 49266635 (+)
LOC118944717 NA coding downstream 705544 49323013 ~ 49323866 (+)
LOC110508133 fbxo40 coding downstream 1848414 50465883 ~ 50476608 (+)
G2089200 NA non-coding upstream 14479 48600374 ~ 48600788 (+)
G2089190 NA non-coding upstream 36263 48577968 ~ 48579004 (+)
G2089174 NA non-coding upstream 69268 48544446 ~ 48545999 (+)
G2089173 NA non-coding upstream 73324 48541670 ~ 48541943 (+)
G2089165 NA non-coding upstream 94063 48520906 ~ 48521204 (+)
G2089207 NA non-coding downstream 1030 48618499 ~ 48618907 (+)
G2089208 NA non-coding downstream 2476 48619945 ~ 48620450 (+)
G2089220 NA non-coding downstream 34883 48652352 ~ 48652935 (+)
G2089243 NA non-coding downstream 66220 48683689 ~ 48684256 (+)
G2089244 NA non-coding downstream 67074 48684543 ~ 48686439 (+)
G2089124 NA other upstream 159781 48432478 ~ 48455486 (+)
G2089020 NA other upstream 423905 48188209 ~ 48191362 (+)
G2088870 NA other upstream 750438 47854106 ~ 47864829 (+)
G2088732 NA other upstream 1077322 47532422 ~ 47537945 (+)
G2088729 NA other upstream 1086719 47525440 ~ 47528548 (+)
G2089906 NA other downstream 309506 48926975 ~ 48927292 (+)
G2089935 NA other downstream 440536 49058005 ~ 49058895 (+)
G2090091 LOC106581584 other downstream 695274 49312743 ~ 49316226 (+)
G2090103 NA other downstream 715978 49333447 ~ 49334183 (+)

Expression


Co-expression Network