G2090001


Basic Information

Item Value
gene id G2090001
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49099304 ~ 49099878 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2390746
AATGCTTCGTAAACatcaggtgtagactaacagtgtaatgctgactgatgggtccttggtaaacaacaggtgtagactaacagtgtaatgctgactgatgggtccttggtaaacaacaggtgtagactaacagtgaaatgctgactgaagggtccttggtaaacaacaggtgtagactaacagtgtaatgctgactgactggtccttggtaaacaacaggtgtagactaacagtgaaatgcttacttatgggctcttctaaacaATGGGTACCCGTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2390746 True 278 lncRNA 0.44 3 49099304 49099878

Neighbor

gene id symbol gene type direction distance location
zmp:0000001236 LOC106581583 coding upstream 324623 48633372 ~ 48774681 (+)
gab2 gab2 coding upstream 474856 48460449 ~ 48624448 (+)
nars2 nars2 coding upstream 640865 48401253 ~ 48458439 (+)
tenm4 tenm4 coding upstream 780219 47640597 ~ 48319085 (+)
LOC118944690 NA coding upstream 1616270 47482390 ~ 47483034 (+)
pgr LOC100846969 coding downstream 101570 49201448 ~ 49266635 (+)
LOC118944717 NA coding downstream 223135 49323013 ~ 49323866 (+)
LOC110508133 fbxo40 coding downstream 1366005 50465883 ~ 50476608 (+)
LOC110507254 nectin1 coding downstream 1565841 50665719 ~ 50850459 (+)
LOC110508131 LOC106613338 coding downstream 2373642 51473520 ~ 51510450 (+)
G2089983 NA non-coding upstream 20647 49078453 ~ 49078657 (+)
G2089937 NA non-coding upstream 34846 49064090 ~ 49064458 (+)
G2089931 NA non-coding upstream 46935 49052146 ~ 49052369 (+)
G2089930 NA non-coding upstream 47257 49051765 ~ 49052047 (+)
G2089927 NA non-coding upstream 53929 49045149 ~ 49045375 (+)
G2090010 NA non-coding downstream 9549 49109427 ~ 49109670 (+)
G2090025 NA non-coding downstream 22853 49122731 ~ 49122979 (+)
G2090031 NA non-coding downstream 40892 49140770 ~ 49141054 (+)
trpc6b LOC106581586 non-coding downstream 43081 49089883 ~ 49186113 (+)
G2090034 NA non-coding downstream 47956 49147834 ~ 49153873 (+)
G2089935 NA other upstream 40409 49058005 ~ 49058895 (+)
G2089906 NA other upstream 172012 48926975 ~ 48927292 (+)
G2089124 NA other upstream 643818 48432478 ~ 48455486 (+)
G2089020 NA other upstream 907942 48188209 ~ 48191362 (+)
G2088870 NA other upstream 1234475 47854106 ~ 47864829 (+)
G2090091 LOC106581584 other downstream 212865 49312743 ~ 49316226 (+)
G2090103 NA other downstream 233569 49333447 ~ 49334183 (+)
G2090508 NA other downstream 685249 49782101 ~ 49788805 (+)
G2090638 NA other downstream 982185 50082063 ~ 50087691 (+)

Expression


Co-expression Network