G2090499


Basic Information

Item Value
gene id G2090499
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49757942 ~ 49758816 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2391320
tctcccctctcccgctctactctccctctctactccccctctctaccctccaggGGCGCCATACTACactggctgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactatgactgaccatgtaaaacaacacctatcatactactatgactgaccctggaAAACAACACcgatcatactactatgactgaccctgtaaaacaacacctatcacactactatgactgaccctgtaaaaaaacacctatcatactactatgactgaccctgtaaaacaacacctatcatacaactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaaaaaCACCTATCA
>TU2391321
tctcccctctcccgctctactctccctctctactccccctctctaccctccaggGGCGCCATACTACactggctgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatacaactatgactgaccctgtaaaacaacacctatcatacaactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctggaAAACAACACcgatcatactactatgactgaccctgtaaaacaacacctatcacactactatgactgaccctgtaaaaaaacacctatcatactactatgactgaccctgtaaaacaacacctatcatacaactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaaaaaCACCTATCA
>TU2391323
tctcccctctcccgctctactctccctctctactccccctctctaccctccaggGGCGCCATACTACactggctgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctggaAAACAACACcgatcatactactatgactgaccctgtaaaacaacacctatcacactactatgactgaccctgtaaaaaaacacctatcatactactatgactgaccctgtaaaacaacacctatcatacaactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaaaaaCACCTATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2391320 False 394 lncRNA 0.43 2 49757942 49758816
TU2391321 False 505 lncRNA 0.42 2 49757942 49758816
TU2391323 True 357 lncRNA 0.43 2 49757942 49758816

Neighbor

gene id symbol gene type direction distance location
LOC118944717 NA coding upstream 434076 49323013 ~ 49323866 (+)
pgr LOC100846969 coding upstream 491307 49201448 ~ 49266635 (+)
trpc6b LOC106581586 coding upstream 571829 49089883 ~ 49186113 (+)
zmp:0000001236 LOC106581583 coding upstream 983261 48633372 ~ 48774681 (+)
gab2 gab2 coding upstream 1133494 48460449 ~ 48624448 (+)
LOC110508133 fbxo40 coding downstream 707067 50465883 ~ 50476608 (+)
LOC110507254 nectin1 coding downstream 906903 50665719 ~ 50850459 (+)
LOC110508131 LOC106613338 coding downstream 1714704 51473520 ~ 51510450 (+)
G2090479 NA non-coding upstream 26998 49729209 ~ 49730944 (+)
G2090454 NA non-coding upstream 68429 49688685 ~ 49689513 (+)
G2090407 NA non-coding upstream 100964 49608276 ~ 49656978 (+)
G2090424 NA non-coding upstream 115003 49641294 ~ 49642939 (+)
G2090406 NA non-coding upstream 150096 49607534 ~ 49607846 (+)
G2090501 NA non-coding downstream 6191 49765007 ~ 49765533 (+)
G2090508 NA non-coding downstream 23285 49782101 ~ 49788805 (+)
G2090526 NA non-coding downstream 69301 49828117 ~ 49828635 (+)
G2090529 NA non-coding downstream 81415 49840231 ~ 49840717 (+)
G2090548 NA non-coding downstream 119317 49878133 ~ 49883194 (+)
G2090103 NA other upstream 423759 49333447 ~ 49334183 (+)
G2090091 LOC106581584 other upstream 441716 49312743 ~ 49316226 (+)
G2089935 NA other upstream 699047 49058005 ~ 49058895 (+)
G2089906 NA other upstream 830650 48926975 ~ 48927292 (+)
G2090638 NA other downstream 323247 50082063 ~ 50087691 (+)
G2091093 NA other downstream 593552 50352368 ~ 50353167 (+)
G2091895 NA other downstream 1610948 51369764 ~ 51370763 (+)
G2091960 NA other downstream 1711072 51469888 ~ 51470391 (+)

Expression


Co-expression Network