LOC110508444 (LOC106600443)


Basic Information

Item Value
gene id LOC110508444
gene name LOC106600443
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 8062040 ~ 8066701 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588967.2
cgccacccgaacgggaaggggagccaccttcggtcggagtcgtgacaataTAACGTTATACTGAGACCAAACCGTGACCTGTACTGAACATTGTCTAATGGTCCCGAGGTTAATGCATGTTTTACGGCTCCTAGAATGTTCTCAGAACGTCAGTGGGCTAGCTAACTTCAGGCTCTGGGGGGAAGCATGTGGCTCCTGGAGAAGTTCCGTGGTTCTCATGGCTGTCACTCTGCGTCATCGGGGGACAAGCAGCAGAACCAGACAGACCCCGTCTCCATTCACACCAACATCATCACCCCCGGTAAGATCCCCGACTTCTTCATCCCCCACAAACTCATCTGCTGCCCCCCAGAGACAGAGTCCCTCACGCCGGAGCCCCAGCCCCACTCCACCTTGCACCCCTACACCTCCGAGCACGCAATCTGCAGCCAGACCCAGGGCAGCTGCAACCTGAACCCCCGCAGCCCGCGCCTGCTCTCTCGTCTTGCCGAGGACACCCGCAACCTTTTGAGGGCCTCTAACCGCCACATCATCCAGATTAAGAGCACAGACGATCCAGGGAGCGGGgtaggggaggggggagacacCAACGCAGAGCCACAGTCCCAGACAGACATGTCCCTGCCTTACGTCCCCAAGGTCCAGACCTCGTATGGGTTCTCCACACTGGTGGAGAGCCCCCACAGCCACCGCAAGGAGTCCATCTTCCACAGAGACCCCAGCAGCCCCCATACCTCCCCGGGCTCCCAGAGACACAACCGGGGGGAGAACCACCTGACGCCCTCTGTCCCCAACCCCTACCGCTACTTCAGTGGGGGTGAGAGCGACACGTGCTCTTCGGCCGAGTCCTCCCCCATtacctcccccctcctcacccgCTCCGCCTCCCTCCTCCGATCCATCACACAGGAGACGCAGGCCAAGATTTTTTCTCCCTCTCAGGTATCTCGTGCCAAGCATACCCTGGCACGCCGCAGATCCCTGTCCACGAATGACTGCAGCTCGCCCGACACCAGCCCCAGCCTGCAGCGCCGCCGCCTGCGCTGCCCTCCCTCCCCTACCTTCCGCGGACGCAAGGGGACCGGCTCTGGGGGGGCGAGTTCAGACCTCCTCCAGCGTGAGCACTCGGTCAACCTCAACAAAGGTGGCACGCTGAGGCTCAGCACTCACTATGATGCCGAGACAGCCCGGCTGAGGGTCCGAGTGCTCGCCGCCGAGGACCTGTACGAGAAACAGACGGACGTGAAGAGCATCAACTGCTGCGTGTCTCTTTACCTGAACCCAGGCAAGCAGCAGAAGCAGAGGAGCACCATCATCAATAACAGCAGGAACCCCATGTTCAACGAGGACTTCTTCTTTGACGCAGTGCCGGCCGCCCAGGTCAAGAGCCTGGCCATGAAGATGAAGGTGGTGAACAAGGGAACCAGTCTGAAGAGAGATGTGCtgctgggggagagggaggtgctGCTGAGCGAGCTACTGCCAGGCATCTAGAGATTCAGGCTTTCTTTGGGTTCTGTTTGGATTGACTGCGATCGAACCCTGAGGTAGAGCTCTTTTTTTGAAATTGTGTCCCTTAGTGGAACTAGTTGGATTGGTCACCTTGGACACCCAGCACTGTAGCAAATCAGAGTGAGGAGGTGTgtgatgtgtgggtgtgtgtatgtttgtgtgtgttttagggttgaatattttcctGATGTTTTCCAAATGTTCAATCCCGAGAATAAATCCCTTTTCTACCAGGTAACCCAGTATTTCATGTCAAACccggaagtgtcattcaaaagcattataaagcatataaatacactatgtctggatttgattatAGCTTTGATCAACATGAAAATTCAAACCTGATGCTACCTGATCCTGATGGGCCATATATTAAATACATGTTATGAACCCTACATAAACAACATTTAAAATGCCCAAGCCCAAAAAGCCTAAATGATTGTGACATTATCTAATACATACAGGCTACTGCACCTTATGCACGACCGAAAACCATAAAAGCCCATAGATATAGCGAGCTAAATGCTCTCTTAGGTAAATACATGAAACTAGTTTCAGAAGCTAAtctttttgagtttgtactgtaatatactgttaTATGGACTTGAATTACGCACATCGTTCAAGACCATGATAA
>XM_036966962.1
cgccacccgaacgggaaggggagccaccttcggtcggagtcgtgacaataTAACGTTATACTGAGACCAAACCGTGACCTGTACTGAACATTGTCTAATGGTCCCGAGGTTAATGCATGTTTTACGGCTCCTAGAATGTTCTCAGAACCTAGCTAACTTCAGGCTCTGGGGGGAAGCATGTGGCTCCTGGAGAAGTTCCGTGGTTCTCATGGCTGTCACTCTGCGTCATCGGGGGACAAGCAGCAGAACCAGACAGACCCCGTCTCCATTCACACCAACATCATCACCCCCGGTAAGATCCCCGACTTCTTCATCCCCCACAAACTCATCTGCTGCCCCCCAGAGACAGAGTCCCTCACGCCGGAGCCCCAGCCCCACTCCACCTTGCACCCCTACACCTCCGAGCACGCAATCTGCAGCCAGACCCAGGGCAGCTGCAACCTGAACCCCCGCAGCCCGCGCCTGCTCTCTCGTCTTGCCGAGGACACCCGCAACCTTTTGAGGGCCTCTAACCGCCACATCATCCAGATTAAGAGCACAGACGATCCAGGGAGCGGGgtaggggaggggggagacacCAACGCAGAGCCACAGTCCCAGACAGACATGTCCCTGCCTTACGTCCCCAAGGTCCAGACCTCGTATGGGTTCTCCACACTGGTGGAGAGCCCCCACAGCCACCGCAAGGAGTCCATCTTCCACAGAGACCCCAGCAGCCCCCATACCTCCCCGGGCTCCCAGAGACACAACCGGGGGGAGAACCACCTGACGCCCTCTGTCCCCAACCCCTACCGCTACTTCAGTGGGGGTGAGAGCGACACGTGCTCTTCGGCCGAGTCCTCCCCCATtacctcccccctcctcacccgCTCCGCCTCCCTCCTCCGATCCATCACACAGGAGACGCAGGCCAAGATTTTTTCTCCCTCTCAGGTATCTCGTGCCAAGCATACCCTGGCACGCCGCAGATCCCTGTCCACGAATGACTGCAGCTCGCCCGACACCAGCCCCAGCCTGCAGCGCCGCCGCCTGCGCTGCCCTCCCTCCCCTACCTTCCGCGGACGCAAGGGGACCGGCTCTGGGGGGGCGAGTTCAGACCTCCTCCAGCGTGAGCACTCGGTCAACCTCAACAAAGGTGGCACGCTGAGGCTCAGCACTCACTATGATGCCGAGACAGCCCGGCTGAGGGTCCGAGTGCTCGCCGCCGAGGACCTGTACGAGAAACAGACGGACGTGAAGAGCATCAACTGCTGCGTGTCTCTTTACCTGAACCCAGGCAAGCAGCAGAAGCAGAGGAGCACCATCATCAATAACAGCAGGAACCCCATGTTCAACGAGGACTTCTTCTTTGACGCAGTGCCGGCCGCCCAGGTCAAGAGCCTGGCCATGAAGATGAAGGTGGTGAACAAGGGAACCAGTCTGAAGAGAGATGTGCtgctgggggagagggaggtgctGCTGAGCGAGCTACTGCCAGGCATCTAGAGATTCAGGCTTTCTTTGGGTTCTGTTTGGATTGACTGCGATCGAACCCTGAGGTAGAGCTCTTTTTTTGAAATTGTGTCCCTTAGTGGAACTAGTTGGATTGGTCACCTTGGACACCCAGCACTGTAGCAAATCAGAGTGAGGAGGTGTgtgatgtgtgggtgtgtgtatgtttgtgtgtgttttagggttgaatattttcctGATGTTTTCCAAATGTTCAATCCCGAGAATAAATCCCTTTTCTACCAGGTAACCCAGTATTTCATGTCAAACccggaagtgtcattcaaaagcattataaagcatataaatacactatgtctggatttgattatAGCTTTGATCAACATGAAAATTCAAACCTGATGCTACCTGATCCTGATGGGCCATATATTAAATACATGTTATGAACCCTACATAAACAACATTTAAAATGCCCAAGCCCAAAAAGCCTAAATGATTGTGACATTATCTAATACATACAGGCTACTGCACCTTATGCACGACCGAAAACCATAAAAGCCCATAGATATAGCGAGCTAAATGCTCTCTTAGGTAAATACATGAAACTAGTTTCAGAAGCTAAtctttttgagtttgtactgtaatatactgttaTATGGACTTGAATTACGCACATCGTTCAAGACCATGATAA
>XM_021588965.2
GCGGGCAGGGTCCATATGTAAACCAGACGTGGACTCATCAGAGCCCCAATTATTGTTTGTTTCCCCCACAGTTACTCTGTCTGACGGAAGGTAGGTTAGTTAGGCAACCCATGTGAAGCGAATCACGGAAAGTATTAAGGGGACAGGGACAGACGCATGTGAGCGACGTTGAACAATTTTCTATTTCTATCGGGAAGAGTGGTAGGGAAACACTTCAGGCCAACGGTGAGTTCCTGTGATCCAACAGGTCCTTCGTTTGTCTTGCAGCCTACCGGTCGGCTTATCGCCGCTTTTCGATCAGTGACACTCTAGCTAACTTCAGGCTCTGGGGGGAAGCATGTGGCTCCTGGAGAAGTTCCGTGGTTCTCATGGCTGTCACTCTGCGTCATCGGGGGACAAGCAGCAGAACCAGACAGACCCCGTCTCCATTCACACCAACATCATCACCCCCGGTAAGATCCCCGACTTCTTCATCCCCCACAAACTCATCTGCTGCCCCCCAGAGACAGAGTCCCTCACGCCGGAGCCCCAGCCCCACTCCACCTTGCACCCCTACACCTCCGAGCACGCAATCTGCAGCCAGACCCAGGGCAGCTGCAACCTGAACCCCCGCAGCCCGCGCCTGCTCTCTCGTCTTGCCGAGGACACCCGCAACCTTTTGAGGGCCTCTAACCGCCACATCATCCAGATTAAGAGCACAGACGATCCAGGGAGCGGGgtaggggaggggggagacacCAACGCAGAGCCACAGTCCCAGACAGACATGTCCCTGCCTTACGTCCCCAAGGTCCAGACCTCGTATGGGTTCTCCACACTGGTGGAGAGCCCCCACAGCCACCGCAAGGAGTCCATCTTCCACAGAGACCCCAGCAGCCCCCATACCTCCCCGGGCTCCCAGAGACACAACCGGGGGGAGAACCACCTGACGCCCTCTGTCCCCAACCCCTACCGCTACTTCAGTGGGGGTGAGAGCGACACGTGCTCTTCGGCCGAGTCCTCCCCCATtacctcccccctcctcacccgCTCCGCCTCCCTCCTCCGATCCATCACACAGGAGACGCAGGCCAAGATTTTTTCTCCCTCTCAGGTATCTCGTGCCAAGCATACCCTGGCACGCCGCAGATCCCTGTCCACGAATGACTGCAGCTCGCCCGACACCAGCCCCAGCCTGCAGCGCCGCCGCCTGCGCTGCCCTCCCTCCCCTACCTTCCGCGGACGCAAGGGGACCGGCTCTGGGGGGGCGAGTTCAGACCTCCTCCAGCGTGAGCACTCGGTCAACCTCAACAAAGGTGGCACGCTGAGGCTCAGCACTCACTATGATGCCGAGACAGCCCGGCTGAGGGTCCGAGTGCTCGCCGCCGAGGACCTGTACGAGAAACAGACGGACGTGAAGAGCATCAACTGCTGCGTGTCTCTTTACCTGAACCCAGGCAAGCAGCAGAAGCAGAGGAGCACCATCATCAATAACAGCAGGAACCCCATGTTCAACGAGGACTTCTTCTTTGACGCAGTGCCGGCCGCCCAGGTCAAGAGCCTGGCCATGAAGATGAAGGTGGTGAACAAGGGAACCAGTCTGAAGAGAGATGTGCtgctgggggagagggaggtgctGCTGAGCGAGCTACTGCCAGGCATCTAGAGATTCAGGCTTTCTTTGGGTTCTGTTTGGATTGACTGCGATCGAACCCTGAGGTAGAGCTCTTTTTTTGAAATTGTGTCCCTTAGTGGAACTAGTTGGATTGGTCACCTTGGACACCCAGCACTGTAGCAAATCAGAGTGAGGAGGTGTgtgatgtgtgggtgtgtgtatgtttgtgtgtgttttagggttgaatattttcctGATGTTTTCCAAATGTTCAATCCCGAGAATAAATCCCTTTTCTACCAGGTAACCCAGTATTTCATGTCAAACccggaagtgtcattcaaaagcattataaagcatataaatacactatgtctggatttgattatAGCTTTGATCAACATGAAAATTCAAACCTGATGCTACCTGATCCTGATGGGCCATATATTAAATACATGTTATGAACCCTACATAAACAACATTTAAAATGCCCAAGCCCAAAAAGCCTAAATGATTGTGACATTATCTAATACATACAGGCTACTGCACCTTATGCACGACCGAAAACCATAAAAGCCCATAGATATAGCGAGCTAAATGCTCTCTTAGGTAAATACATGAAACTAGTTTCAGAAGCTAAtctttttgagtttgtactgtaatatactgttaTATGGACTTGAATTACGCACATCGTTCAAGACCATGATAA
>XM_021588966.2
GCGGGCAGGGTCCATATGTAAACCAGACGTGGACTCATCAGAGCCCCAATTATTGTTTGTTTCCCCCACAGTTACTCTGTCTGACGGAAGGTAGGTTAGTTAGGCAACCCATGTGAAGCGAATCACGGAAAGTATTAAGGGGACAGGGACAGACGCATGTGAGCGACGTTGAACAATTTTCTATTTCTATCGGGAAGAGTGGTAGGGAAACACTTCAGGCCAACGCTAGCTAACTTCAGGCTCTGGGGGGAAGCATGTGGCTCCTGGAGAAGTTCCGTGGTTCTCATGGCTGTCACTCTGCGTCATCGGGGGACAAGCAGCAGAACCAGACAGACCCCGTCTCCATTCACACCAACATCATCACCCCCGGTAAGATCCCCGACTTCTTCATCCCCCACAAACTCATCTGCTGCCCCCCAGAGACAGAGTCCCTCACGCCGGAGCCCCAGCCCCACTCCACCTTGCACCCCTACACCTCCGAGCACGCAATCTGCAGCCAGACCCAGGGCAGCTGCAACCTGAACCCCCGCAGCCCGCGCCTGCTCTCTCGTCTTGCCGAGGACACCCGCAACCTTTTGAGGGCCTCTAACCGCCACATCATCCAGATTAAGAGCACAGACGATCCAGGGAGCGGGgtaggggaggggggagacacCAACGCAGAGCCACAGTCCCAGACAGACATGTCCCTGCCTTACGTCCCCAAGGTCCAGACCTCGTATGGGTTCTCCACACTGGTGGAGAGCCCCCACAGCCACCGCAAGGAGTCCATCTTCCACAGAGACCCCAGCAGCCCCCATACCTCCCCGGGCTCCCAGAGACACAACCGGGGGGAGAACCACCTGACGCCCTCTGTCCCCAACCCCTACCGCTACTTCAGTGGGGGTGAGAGCGACACGTGCTCTTCGGCCGAGTCCTCCCCCATtacctcccccctcctcacccgCTCCGCCTCCCTCCTCCGATCCATCACACAGGAGACGCAGGCCAAGATTTTTTCTCCCTCTCAGGTATCTCGTGCCAAGCATACCCTGGCACGCCGCAGATCCCTGTCCACGAATGACTGCAGCTCGCCCGACACCAGCCCCAGCCTGCAGCGCCGCCGCCTGCGCTGCCCTCCCTCCCCTACCTTCCGCGGACGCAAGGGGACCGGCTCTGGGGGGGCGAGTTCAGACCTCCTCCAGCGTGAGCACTCGGTCAACCTCAACAAAGGTGGCACGCTGAGGCTCAGCACTCACTATGATGCCGAGACAGCCCGGCTGAGGGTCCGAGTGCTCGCCGCCGAGGACCTGTACGAGAAACAGACGGACGTGAAGAGCATCAACTGCTGCGTGTCTCTTTACCTGAACCCAGGCAAGCAGCAGAAGCAGAGGAGCACCATCATCAATAACAGCAGGAACCCCATGTTCAACGAGGACTTCTTCTTTGACGCAGTGCCGGCCGCCCAGGTCAAGAGCCTGGCCATGAAGATGAAGGTGGTGAACAAGGGAACCAGTCTGAAGAGAGATGTGCtgctgggggagagggaggtgctGCTGAGCGAGCTACTGCCAGGCATCTAGAGATTCAGGCTTTCTTTGGGTTCTGTTTGGATTGACTGCGATCGAACCCTGAGGTAGAGCTCTTTTTTTGAAATTGTGTCCCTTAGTGGAACTAGTTGGATTGGTCACCTTGGACACCCAGCACTGTAGCAAATCAGAGTGAGGAGGTGTgtgatgtgtgggtgtgtgtatgtttgtgtgtgttttagggttgaatattttcctGATGTTTTCCAAATGTTCAATCCCGAGAATAAATCCCTTTTCTACCAGGTAACCCAGTATTTCATGTCAAACccggaagtgtcattcaaaagcattataaagcatataaatacactatgtctggatttgattatAGCTTTGATCAACATGAAAATTCAAACCTGATGCTACCTGATCCTGATGGGCCATATATTAAATACATGTTATGAACCCTACATAAACAACATTTAAAATGCCCAAGCCCAAAAAGCCTAAATGATTGTGACATTATCTAATACATACAGGCTACTGCACCTTATGCACGACCGAAAACCATAAAAGCCCATAGATATAGCGAGCTAAATGCTCTCTTAGGTAAATACATGAAACTAGTTTCAGAAGCTAAtctttttgagtttgtactgtaatatactgttaTATGGACTTGAATTACGCACATCGTTCAAGACCATGATAA

Function

NR:

description
C2 calcium-dependent domain-containing protein 4C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588967.2 False 2155 mRNA 0.54 3 8062040 8064564
XM_036966962.1 False 2146 mRNA 0.54 3 8062040 8064564
XM_021588965.2 False 2306 mRNA 0.53 3 8062040 8066701
XM_021588966.2 True 2223 mRNA 0.53 3 8062040 8066701

Neighbor

gene id symbol gene type direction distance location
LOC110508443 LOC106600051 coding downstream 18031 7993411 ~ 8044009 (-)
LOC110508442 LOC106600049 coding downstream 69517 7988636 ~ 7992523 (-)
LOC110508438 LOC106600038 coding downstream 81822 7883892 ~ 7980218 (-)
LOC110508437 LOC106600038 coding downstream 152285 7906401 ~ 7909755 (-)
LOC110508436 LOC106600442 coding downstream 183674 7862322 ~ 7878366 (-)
LOC110508446 LOC106600062 coding upstream 194455 8261156 ~ 8304991 (-)
LOC110509207 LOC106600069 coding upstream 259194 8324762 ~ 8335344 (-)
LOC110508449 NA coding upstream 291127 8357821 ~ 8383590 (-)
LOC110509208 LOC106600076 coding upstream 342182 8408883 ~ 8422986 (-)
LOC118936616 LOC106600091 coding upstream 413623 8480324 ~ 8522153 (-)
G2101155 NA non-coding downstream 5223 8056439 ~ 8056817 (-)
G2101052 NA non-coding downstream 33416 8009068 ~ 8028624 (-)
G2100940 NA non-coding downstream 126078 7924813 ~ 7935962 (-)
G2100851 NA non-coding downstream 204578 7857231 ~ 7857462 (-)
G2100844 LOC106569516 non-coding downstream 205099 7853544 ~ 7856941 (-)
G2101164 NA non-coding upstream 1836 8068537 ~ 8068752 (-)
G2101173 NA non-coding upstream 11822 8078523 ~ 8078732 (-)
G2101184 NA non-coding upstream 27128 8093829 ~ 8094465 (-)
G2101185 NA non-coding upstream 28416 8095117 ~ 8095345 (-)
G2101187 NA non-coding upstream 32390 8099091 ~ 8099296 (-)
LOC110508434 LOC106600027 other downstream 290857 7767544 ~ 7837267 (-)
G2100707 NA other downstream 468225 7593294 ~ 7593815 (-)
G2100109 NA other downstream 855552 7203606 ~ 7206488 (-)
G2099318 NA other downstream 1622944 6426170 ~ 6439096 (-)
G2101243 NA other upstream 91518 8158219 ~ 8158518 (-)
G2101464 NA other upstream 171443 8238144 ~ 8239853 (-)
LOC110508274 LOC106600446 other upstream 910151 8976699 ~ 8978156 (-)
LOC110508459 LOC106599937 other upstream 1111633 9154717 ~ 9180242 (-)

Expression


Co-expression Network