LOC110508854 (LOC106599121)


Basic Information

Item Value
gene id LOC110508854
gene name LOC106599121
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 28632715 ~ 28639924 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589710.2
TTTTCAAAATGGCAGCAACATTGCAAATAAGCGAGTTTGATAGTGAAGACCAAATAACTAAAGAAATAGCAAAACAAGAAGAGACAACGTCGTTGAAATACATAATATTGCGCAAAGACAAACGTTTTGGGCGAAAGGATGCACACCCTTTGGAAGGAAAGAAGATCAGCTGGGAGGTAAAAAGTCACCCATTCAATGGAGTTCCATTTCAGGTTGTGGGCACAAGCACATATGAATGCCATCAGGGGAAAGACCGACAAGTAAAAGCTAAAGAGAAACATGCTGCTAAAATGAACAAGAAGGCGCTTGAAGACCATGCCTTAAAGAGACGGAAACAAAATACAAAGAAGGTGGACTGCAAGGCTTTAATAAACATCGCCCACATTATCCGCTTTCCTGGTTTTAAGATTGAGGAGAGTACTGTGCGCTCTAAAAAGGAGGCCTCAAAAGATCTGAAGGCAGCTCTAAGTGAAAAACCAAGCTCTGTGAAGGCAGAGGTTGTCTACTGTGTcaggttcccctctctctctgagcatAGCTCACACGCACTTGTTGGTgagAGGTCCTCTAAGAAGAACTTGAAGATGTTGCAGAAGCAATGTGCAGGCTATCTAAAAGAAATCACAGACCTCACCTATCATCTTCAAGATGAACAGTATATGGCTGGCCTGTCTTCACATCTGCAAAGCCTATTGCAGGAAATGAAAGGACTTGTCCCACAGGATAAAGATCTCACACTGACCCTTTCCCCAAGGAAGAGAAAGGCTGAGGAGGACATGGCCACCCTACCAACCCAGGGAGCATCGCAACCTTTCACCGACAGTGTAGGACAGCATGCAGATTTACAGAACACATGCGAAGAACCATGTTTGCCAAACTGAGTGTGGAGTGAGATTGCTTGTAGGCAGGGAGCCTAGGGTGCCGGAggatggcagtgtgtgtgtgtatatatgtgttgagtctgttttttttgttttttcccagaatattttatttttgagagcTGGGTTTTGTGGTAACCCAAGCCTGCCAGCATACTTGTACCATTTTAATATTaattgtaataaaataaaaatacatttgggtGA

Function

NR:

description
uncharacterized protein LOC110508854

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589710.2 True 1088 mRNA 0.43 5 28632715 28639924

Neighbor

gene id symbol gene type direction distance location
plppr5a LOC106599133 coding downstream 125776 28463481 ~ 28506939 (-)
LOC110508849 NA coding downstream 228822 28398505 ~ 28403893 (-)
LOC110508200 NA coding downstream 265506 28193876 ~ 28367209 (-)
LOC118944862 LOC106599141 coding downstream 564257 28044850 ~ 28068458 (-)
LOC110508843 LOC106599203 coding downstream 630517 27999061 ~ 28002198 (-)
LOC110508857 LOC106599111 coding upstream 66164 28706088 ~ 28753683 (-)
dusp12 dusp12 coding upstream 117654 28757578 ~ 28760180 (-)
LOC110508860 LOC106599100 coding upstream 177680 28817604 ~ 28840725 (-)
LOC110508863 LOC106599199 coding upstream 220801 28860725 ~ 28862370 (-)
LOC110508862 LOC106599098 coding upstream 253891 28893815 ~ 28901239 (-)
G2125197 NA non-coding downstream 92341 28538254 ~ 28540374 (-)
G2125143 NA non-coding downstream 175092 28457381 ~ 28457623 (-)
G2125130 NA non-coding downstream 192643 28439793 ~ 28440072 (-)
G2124908 NA non-coding downstream 211503 28421007 ~ 28421212 (-)
G2124904 NA non-coding downstream 213454 28418918 ~ 28419261 (-)
G2125259 LOC106599119 non-coding upstream 280 28640204 ~ 28641164 (-)
G2125272 LOC106599117 non-coding upstream 26617 28666541 ~ 28667665 (-)
G2125314 NA non-coding upstream 100280 28740204 ~ 28740958 (-)
G2125328 NA non-coding upstream 126072 28765996 ~ 28766210 (-)
G2125336 NA non-coding upstream 128655 28768579 ~ 28768817 (-)
G2125203 LOC106599130 other downstream 81201 28544941 ~ 28551514 (-)
LOC110508791 LOC106568850 other downstream 2563506 25677135 ~ 26069268 (-)
G2122515 NA other downstream 2682262 25946733 ~ 25950453 (-)
G2121457 NA other downstream 3358089 25198248 ~ 25274626 (-)
G2121444 LOC106599515 other downstream 3484195 25144062 ~ 25148520 (-)
G2125270 agla other upstream 22784 28662708 ~ 28663426 (-)
G2125290 NA other upstream 52215 28692139 ~ 28692470 (-)
G2125723 NA other upstream 245544 28885468 ~ 28885854 (-)
G2125813 NA other upstream 438115 29078039 ~ 29078744 (-)
LOC118944842 NA other upstream 478760 29118684 ~ 29123806 (-)

Expression


Co-expression Network