LOC110508868 (LOC106599087)


Basic Information

Item Value
gene id LOC110508868
gene name LOC106599087
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29045566 ~ 29073745 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589737.2
AATGCACCCCAGTTAACACCCTCGAACTGGTCTCAAACTTCGGCAGCAGCCAAGCTGCACAGTCGACATGGCTACCGATTTAATAACGCAATATTTTCCTAAAGACAGATAAATCTTCCAAGTGTTTTGGAATGAGATTTGTCACGTGACATGATGCGCATCCACGATGTGTGACAACGTTTGAAGAACAATTACGTTCGGAAGAAAAGTCTTGATTCCAGTGGAATCTTCCATATTTTTTTCTTTGTAAAAAAAACTGTCCAGTGATGCCTGTGCAAGCCCCACAATGGACGGAGTTCCTGCTGTGTCCCATCTGCACGCAGACGTTCGAGGAGACGGTGCGGCGGCCCATCTCGCTGGGCTGTGGCCACACCGTCTGCAAGATGTGCCTGAACAAGCTCCACCGCAAGGCCTGCCCCTTCGACCAGACAGCCATCGCCACCGACATCGAGCAGCTGCCGGTAAACACAGCCCTACTGCAGCTTGTGGGGGGACAGGTTCCCAAGGTTCAGCCGGTGGCCCTGATCACCAGCCCAGAGGACTCGCAGCACTATGAGGAGGCTAGACAGTGTGTAGATGAGCTGGCCCTCTACCTCAAACCCCTCAGCAACAACAGAGGGGTGGGTCTAAGCAACACAGCCCAGAGCATGCTGAGTCGGCCCATGCAGAGGAAGCTGGTGACCCTGGTCCACTGTCagctggtggaggaggagggccgTGTGCGGGCCATGAGGGCAGCCAGGTCTCTGGGGGAGCGCACGGTCACAGAGCTCATCCTACAACACCAGAACCCCCAGCAATTGTCATCCAATTTGTGGGCCGCCGTCCGGGCCCGGGGATGCCAGTTCTTGGGCCCAGCCATGCAGGAGGAGGCTCTGAAGCTGGTGCTGCTGGCTCTGGAGGATGGCTTGGCCCTGTCCAGGAAGGTTCTGGTGCTGTTTGTGGTCCAGAGGTTAGAGCCACGCTTCCCCCAGGCCTCCAAGACCAGCATAGGCCATGTGGTGCAGCTCCTCTACAGGGCCTCCTGCTTCAAGGTGACCAAGCGAGACGAGGACTCGTCCCTGATGCAGCTGAAAGAGGAGTTCAGGACGTATGAGGCACTGCGGCGCGAACACGATTCCCAGATTGTGCAGATCGCCATGGAGGGTGGCCTCCGCATCGCTCCCGACCAGTGGTCCTCCCTGCTCTATGGGGACCAGTCCCACAAGTCCCACATGCAGTCCATCATTGACAAGTTGCAAACGCCAGCATCGTTTGCCCAGAGCGTTCAGGAGCTGACCATCGCCTTGCAGAGGACGGGCGACCCCGCCAACCTTAATCAGCTCCGACCACATCTGGAACTACTGGCCAACATCGACCCTAGCCccgACGCCCCCCCTCCCACGTGGGAGCAGCTGGAGAAGGGTCTGGTGGCGGTGAAGACCGTGGTCCACGGCCTGGTGGACTTCATCCAGAACCACAGCAAGAAGGGAGCCGACCCACAACAGcCTCCCCAGCACAGTAAATACAAGACGTACATGTGTCGGGACATGAAGCAGAAGGGGGGCTGTCCCCGAGGAGCCAGCTGTACCTTCGCCCACTCTCAGGAGGAGCTGGAGAAGTACCGTAAGATGAACAAGCGTTTGGCAGCTCGCCTCCCTGGCTCCTCCGGCCTGCTGTCGGATGACTGTCTCCCTCTGGACATGGGGGTGACCCGGAACACCTCGCCCCTTACCAACGGCTCAGCTGGACACCCCATGCCCCAGCTCATCACCCGCGGCACGGACGCCGTGACCTACGACCTGTTGTGCAAGCCCAAGATAGACGGCGGGAGCAGCAGCTCCCCGGGATCGCCCCCTGACTCTCTGGATTCAGGGCCCAAACAAGGGTTCCTTCAGCCTCCCCTTGCCATGGGCCACCCCAGGGGGTCAGGCGACCCCATGCCCAAACAGATGCCCGTAGGTGTGATGCCCCGGGGGCCTCAGATGTACCCCCAGCAGCTGCCTGACATGTACTACTCCGACTCACACCCACTGCCTTCCGCCTCCCAGTACGAGCCTTCGCAGTACCCCCAAGGATACCCCTACCAGCAGCCCCCCCAGTACTCCACCCAGCGCTACATCCGAAACCTCCCTACCCCCAGCGAGCCCGCTGGACCCCCCTACCAGGACCCCTATCCCGGCTATGGCCCTCCCGAGCGCCCTTACCCAGCTCCCCACTCCGGCACCCCCTACTCCTACCTTCCCCACTATGACACCCGGGGCCGCCACGGCCCTTACCCTGGCCCCCAGCCATACCCCTCGCAGAGGGACGACATGCCCCCTAACCACCACTACCAACAGGAGCAGGCGGCCAGGGGGAGGTACCCCCCAGAGGGGTACTACCCAACTGGGGCCCAGCCTCAATCCATGAGGTCCAACGTCAGGGAGCAGTACAGACGCTCCTCCCAGCCCAGCCTGGACTACCTGCACCATCGCCGCAAGGAGCTGATGGCCCAACTAGAAGAGCGGAAGGTCATCTCCCCGCCACCCTTTGCTGCCTCCCCCACCCTTCCCCATGCCTTTCCTAGTGACTACCCCCCAGAGTATGGGGAGGAAAGCTCCAAAGCCTTTGGGAAGTGCAGGGAGCCGGACTACGCCGGCCAGTATTCTCCCTGGTCCTGTGACACTATCGGCTCCTATATTGTCACCAAGGACGCCAAGCCCAAAGACATCATGACGCCCGGCGCCATGGAGATGATGAATGTGGATGGTAAAGGTCTACGGGGGGAGCCCTCCATGGAGGTCCAGGCCAGGCGGGGGGCGGAGGTCAAAGACGACGACCCCATCATCCCCTTCGGCCCCCAGCCCACCGTGTCGCGCTTCGGGGCCATCTCACGCACCTCCAAGACAGGCTACCAGACGACAGGCCCCGTGCAGGCCATGGCCTCCGCCCAGGGACCCAAGCACATGGCCGCGGAGTTTTCCTATGGGCACCACGGAGGCTGGGGCGGCGCCTCCTACCCCTCCCACCAGACTGGCTTCTCCTCTCAGGGACACTTCAGTGAAAAgctGTCTATGCCAGCTCAGGACAGAGAGCATCTGAAGATTGAGCTCCAACAGGTCAACCAGCAGATCACCCAACAGACCCATACCCACGGCATGGAGAGGGAGGTCAGTGCCCTGGCGGCCCAGCCCTCCCAACCATGTCAGAACCAGGGCCAGCAGGGGAAGTGGCCCGGTCCAGTGGGGGTTTCCAGCAATGCTGCCTTGGTGTCTAGCGAGCAGCTCAGCATGGAGCTGCACCAGGTTGAGAGGGAGATTGGCAAGAGGACCCGCCGGATAGACATGGACAGTCAGGTGGCTCATGAAGTCCAGTACAAGATGAAGGCTGCACAGAATGGCCAGCAGGACCACAAGACCCAGCTGGAGGAGATTGCTCTGGCCCTCGGTGAGGTATCTAATGGCTCCAGCGGTCTAGGTCAGGACGGTGGTGTGGGCGGAGCCATGTTGTCACTGACCAATAAAGCGTCTTCGCTCAGCCTGTGTTCTGAGCCGGGGCCCGGGGTCTCAGAGCTGCAGAAGAATGGTATGGTCCATTCCTGCTcctagaccacacacacacaacacctacTCAGACACTGTGGTGTAAAACATACAGACAGAAGATGAGCAGTATCTGCTGTGATAggagtttttctttctttttttgttcTGTGAATGAGCTTCTTCTTTTTACTTTCATTGCCTGGAAACCAGGGCATTTGAtaacgtttatttttttgttttcttttctcTAACTGGGACTATAAAACAAGCCTCTCAAAGTAATGGAaaagcagatgatgatgatgatgataattgtTCAGAGGCCTATCCCCCTACATAGACATCACATATCAAGACCCATTGTAGATCGATCGGTGGAGTATTTCTCAATTCTCCCCTCTGTATCTTTGTTCCCATTACGAGGCACATTAAGGGTAAGCAGCTTGCAGGGACTTTAAGACCCCAAATACTAAATCAACTTATGCTCATATGTACTACATAATGGTATCATAAGTCTTGGTGTTCACGACAGTTATGTCAGCGGTCGTACGCATCACATAAGTATCTGTTATAATCCATTATAGCCTGATATGACAGTTGTTGATAGTTTCCGATACCTTTGACAGCTTACGAAGGCAATTATAACCAACATTTAGTCAGTGTAGTAACTGTTCCGTTCACGTTCAGTAATATAAGTGTTGTAACCGCTAGGGTTCAGGAATACACCACCCCCAGAATCGTAAAACGTGGTCGACCAGATGAGGGAGGCCAGGGAAAGGGAGAGTGAAAATGTTCAGCCAACCTTCAGAACCAAACGAGACTAGGCCGCTTCAAGCCACATGAGACCTCATGAGAAGTCTGATTTTATTAGTGCATTTTATGAATACATCATATCTGTTTCATACTTGAAAAGCAGTATATTATTAACCAAAGCATTCTGTTTTAAAGATTGCAAAATGAATCTTTTTGATAATGAGCTTTCCTCATGTTTTCTATAAGGGAACCTACTTTGTGCTTCTCGTGGGATGTGGTGTGACTTGCTGCTGGCCGTGGAAATGTCTGTTGTACTGGGGGGCTGGAATTCAATCAAACCTGCAGTGTGGAAAATGCACTCTCAAGGGAGTGTAATAAGTGTTAAGTTAACACAGTTGTAGATAACATGCATTTTCACATTGTAGGAACATTTTCCTCGGTGCAAGATGAATTGATGTGTGAATGGAATCATATGGGGTGATAGTTTTTATCTTCCTCAGAACTCATCTGGTAATCAGAAGACCTCCCCATTGGGATTATCTTGTCATTGGTTCTCTTTAACTTCTATGAAGTTACTTTcccttgttttttttctcccgcTCACATAAATCGCAGTTAAGGGGCTGTAACCTACCTGAACGCTGGTCCGTTATTGGAGGGGAAGTGAGAAATGGATTAATATGCAAAAAATAACTCATCTTTCTCTTAATACATGTAGAAAGTGGCTGTAGTCTGCCAAACAATAATTTCAATGGTTTGTGCGTCTCAATCATCAATGAAAGAATAGCAaattgtctttaaaaaaaataattttgttATCTTAAGAGCTTACTTTAAAAAATTCCTTCTATTCCATTTGTTTTTAACCACATACTATTACTTCATTTTAGAACAAGTCAGGATCGAGACCCATATTATTCAGTGTATTAGTGGATTCAAGACCAGAATCTTGGGCCACAACCTGGCGAGGTTTAAAGCAAGCAGCCAGAAAGCCTTGCCCCTCAAAAAGCCTCTGCCCAAAGTCTTCCTAACCTTCAATTTGAAAACTTTTAGTGCAAACTTTCATGATATTCTTCACAATATAGTTTTAtagtattattatcatcattatcattacgTTATTTTTGCTTTCCCTGTCATGGAAATTGTTGGTGCCTGTTAAGGAGCGCTCTGCCTTTTGTAAACAAACCTCATGATTGGCCATCGAACACTCAAACGGTTAAGGATAGAGGTGACGATCAGGGTTCatagtttggggggggggggttcagcatTTTGTCTGggtttaaggtgtgtgtgtgggggggggggcaatataaATTAAGGTTGGGGAAAGGGTTTTTGTTTTTCTCCAACCACACTTCAAGCCTCAGGCTGCTCTTTAATACATTGTACTGTTTAGGTTAACAACTCACTTATACATATGAGTATGTATACATACATTAATATACTAAGCACTATTAACGTGCCACCTCTTCTTCTACTCGCTCAGCATTTATATTAAATGATCTCTACTTAGAATCAgctaaatgttatttttttccccTGTCCACTGGTTGCCAACACAGACTTTATCCTTACCCAGTTGAAGGACTTCTGTGTGCATTGATGTGTGTTCACTTAATCTTTTTGTGTTCAAACAAATAAGTTCTATATTGAAATATGCTTCCAAAAGAAGACTCATTTTAATGATAAAAATTGAagttttttgttgtgtgtgtgtgctaggttGTATTGTAGAAAAGGTACACTATGGATTTTTTTCAAAGTGAAGGGTGCTGTACTGGGTGACCGTGTGGAAATATTAGAAAtgtgatgtttttgtttttttaagagGTGAGCCGGCTAAGCCTTTAATTTAGTCAAAGGCTTGCTTCTCAAGGAATACTCCTCGGCCATCCACGCCAACAGTAAGATCATTCGGAAGCACACTAATCAAATGAAAAGAGATTTGAATTGGCATGCATGTTTTTTCTCTTCACCTGTCAGTCACCTTTTGTCATATTTATAACAAAACTTGTTTCTTCTGGCAAAATGTCATTGACTAGTTGGGTTTGAAGTTGTTTTTGTTCCTGTCGTTGCTGAGTGAAAAATCACTGACTTCCAAGTCTTACGGTGATCTACGTATCACCTCACAAGGCAAAGCATCATGTTGTCCAGGGAAACTGTCAAACGCAGCATCGCTCTCATCCACACACAGTTTGTCTTTGCTTCAGAATAGTCATGAAAATTAGCTTGCCCACATTTGTTATTTAAGCTTAAGGAAATACTATCAAGGTCCCTCCAGCCAAGACCCTTAAAGAGTGAGTTCACTCCAAATTGTGTCCAATGTTTTCAGATCTGAACAGTGGTCTAATGTTGACATGAGGCTAGCCTCTTTTTGAATCCAAGAGTGTAATACTTAAGCACTcgtctctaacatgtaggctcAGCATGCCCAAACAGTCCCATTACAAGTCAGAATGTTGAACAAACTTTATTTCAACTTACTTGTTGTCTGCTGATTTTGTCCCTATGTTGGACACAATCTGATACAAAATATCCACAGTGAAGTGTTATCAGCCCGACCTTCAGTACACAGGTCTGTATATCGGTTTGTATTACCTACCACCAAAAGGACCAAAAAGGAAAGTAAGTGTAAATACAATTTTCTTCATTCTGGCTTATGGACTATTGCGTCTCTCTTTTAGGGGGACTTGGTCAAACTGAAAATCCATTGAGTAACCATGGTAACAGTTTGACATTTAGGCAAACATGAGCTCACATTCCATGCCATCTGTTGTGTAGATCCAGCCCTAAGCCTCAATCCCAAAACCAATGGCAAAGATGGGCATTCTAATTCAGTGCCTATTGTTTTCTACTCTTTGGGTTTAAGCATATAGCTGAATAAACACTAGATGGGGTGGGATGTAAACTCAAATCAACATTAAACTACTTGAGGTCTAAAATGTGCAACTAACTTTGATTTGAGTGAGCTGTCCCTTTAAATTCCATAGCCGAGGAGAAGTAACAAGGATGTGGTTTCTGGGAAGAGCAATGATCATGTTCATGTCAGTCGCCTGCTTTCATTTGTTTCTGAGCTAAACTGCTGCCTACCCCTTCTTCACACAGCCAACTCTCCCCGGAATCACAATAGTGTTACTGCTGTTTTGGGCTCACATtttaatttctttttttttttttttgaaaaacacAATGGCTTTTTTTATATGATTACTTCCTTGTAATATATCTCTTAAATTAAGGTACAGGTTTAATTTCAGCaagaaaaaaacgtttttatatgtatattatactccatTAAGGAATGTTTAGAATTATCTTCCTCCAATGTGGATGTAGACATTATTACGCCATTTTATGACTTTGTAAGAGAATTCACTGTGTGAAAATTGGTTTGCATTTTTGTATAATACAATCTGCTTTATTATTTTTGTTTGATATGAGAGTTAGGTCAAACTGGAAGTTTGAAGAGAGAAATTAACCTGTGAAATTGAGAAATAAAAGAAAAAATAACTTATGTACAACAGTGATTCTATGCTGAGGGAGAAGGATTAAATGATATTGCTAACTCTGCTA
>TU2430532
TTGTAGAAAAGGTACACTATGGATTTTTTTCAAAGTGAAGGGTGCTGTACTGGGTGACCGTGTGGAAATATTAGAAAtgtgatgtttttgtttttttaagagGTGAGCCGGCTAAGCCTTTAATTTAGTCAAAGGCTTGCTTCTCAAGGAATACTCCTCGGCCATCCACGCCAACAGTAAGATCATTCGGAAGCACACTAATCAAATGAAAAGAGATTTGAATTGGCATGCATGTTTTTTCTCTTCACCTGTCAGTCACCTTTTGTCATATTTATAACAAAACTTGTTTCTTCTGGCAAAATGTCATTGACTAGTTGGGTTTGAAGTTGTTTTTGTTCCTGTCGTTGCTGAGTGAAAAATCACTGACTTCCAAGTCTTACGGTGATCTACGTATCACCTCACAAGGCAAAGCATCATGTTGTCCAGGGAAACTGTCAAACGCAGCATCGCTCTCATCCACACACAGTTTGTCTTTGCTTCAGAATAGTCATGAAAATTAGCTTGCCCACATTTGTTATTTAAGCTTAAGGAAATACTATCAAGGTCCCTCCAGCCAAGACCCTTAAAGAGTGAGTTCACTCCAAATTGTGTCCAATGTTTTCAGATCTGAACAGTGGTCTAATGTTGACATGAGGCTAGCCTatgtaggctcAGCATGCCCAAACAGTCCCATTACAAGTCAGAATGTTGAACAAACTTTATTTCAACTTACTTGTTGTCTGCTGATTTTGTCCCTATGTTGGACACAATCTGATACAAAATATCCACAGTGAAGTGTTATCAGCCCGACCTTCAGTACACAGGTCTGTATATCGGTTTGTATTACCTACCACCAAAAGGACCAAAAAGGAAAGTAAGTGTAAATACAATTTTCTTCATTCTGGCTTATGGACTATTGCGTCTCTCTTTTAGGGGGACTTGGTCAAACTGAAAATCCATTGAGTAACCATGGTAACAGTTTGACATTTAGGCAAACATGAGCTCACATTCCATGCCATCTGTTGTGTAGATCCAGCCCTAAGCCTCAATCCCAAAACCAATGGCAAAGATGGGCATTCTAATTCAGTGCCTATTGTTTTCTACTCTTTGGGTTTAAGCATATAGCTGAATAAACACTAGATGGGGTGGGATGTAAACTCAAATCAACATTAAACTACTTGAGGTCTAAAATGTGCAACTAACTTTGATTTGAGTGAGCTGTCCCTTTAAATTCCATAGCCGAGGAGAAGTAACAAGGATGTGGTTTCTGGGAAGAGCAATGATCATGTTCATGTCAGTCGCCTGCTTTCATTTGTTTCTGAGCTAAACTGCTGCCTACCCCTTCTTCACACAGCCAACTCTCCCCGGAATCACAATAGTGTTACTGCTGTTTTGGGCTCACATtttaatttctttttttttttttttgaaaaacacAATGGCTTTTTTTATATGATTACTTCCTTGTAATATATCTCTTAAATTAAGGTACAGGTTTAATTTCAGCaagaaaaaaacgtttttatatgtatattatactccatTAAGGAATGTTTAGAATTATCTTCCTCCAATGTGGATGTAGACATTATTACGCCATTTTATGACTTTGTAAGAGAATTCACTGTGTGAAAATTGGTTTGCATTTTTGTATAATACAATCTGCTTTATTATTTTTGTTTGATATGAGAGTTAGGTCAAACTGGAAGTTTGAAGAGAGAAATTAACCTGTGAAATTGAGAAATAAAAGAAAAAATAACTTATGTACAACAGTGATTCTATGCTGAGGGAGAAGGATTAAATGATATTGCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589737.2 False 7838 mRNA 0.48 20 29045566 29073745
TU2430532 True 1792 lncRNA 0.37 2 29045575 29047410

Neighbor

gene id symbol gene type direction distance location
LOC110508867 LOC106599198 coding downstream 16671 29026008 ~ 29028895 (-)
LOC110508212 LOC106599092 coding downstream 42329 28983099 ~ 29003237 (-)
LOC110508862 LOC106599098 coding downstream 144327 28893815 ~ 28901239 (-)
LOC110508863 LOC106599199 coding downstream 183196 28860725 ~ 28862370 (-)
LOC110508860 LOC106599100 coding downstream 204841 28817604 ~ 28840725 (-)
LOC118944842 NA coding upstream 46639 29118684 ~ 29123806 (-)
LOC110508284 LOC106598767 coding upstream 64407 29138152 ~ 29141013 (-)
LOC110508873 LOC106599192 coding upstream 120853 29194598 ~ 29199181 (-)
LOC110508876 NA coding upstream 126843 29200588 ~ 29203038 (-)
LOC110508874 LOC106599072 coding upstream 129819 29203564 ~ 29220510 (-)
G2125796 NA non-coding downstream 3103 29042219 ~ 29042463 (-)
G2125789 NA non-coding downstream 15597 29029677 ~ 29029969 (-)
G2125745 NA non-coding downstream 54502 28932659 ~ 28991064 (-)
G2125754 NA non-coding downstream 90820 28949340 ~ 28954746 (-)
G2125728 NA non-coding downstream 141108 28904201 ~ 28904458 (-)
G2125808 NA non-coding upstream 1032 29074777 ~ 29075113 (-)
G2125810 LOC106599085 non-coding upstream 2309 29076054 ~ 29076542 (-)
G2125811 NA non-coding upstream 2809 29076554 ~ 29076799 (-)
G2125812 NA non-coding upstream 3401 29077146 ~ 29077512 (-)
G2125814 NA non-coding upstream 5005 29078750 ~ 29079026 (-)
G2125723 NA other downstream 159712 28885468 ~ 28885854 (-)
G2125290 NA other downstream 353096 28692139 ~ 28692470 (-)
G2125253 NA other downstream 359831 28627055 ~ 28685735 (-)
G2125270 agla other downstream 382140 28662708 ~ 28663426 (-)
G2125203 LOC106599130 other downstream 494052 28544941 ~ 28551514 (-)
G2125813 NA other upstream 4294 29078039 ~ 29078744 (-)
LOC110508917 LOC106598978 other upstream 1327468 30399711 ~ 30401807 (-)
G2127177 NA other upstream 1360690 30434435 ~ 30434854 (-)
G2127455 NA other upstream 1479844 30553589 ~ 30555187 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G134041 NA non-coding NC_053124.1 CM020921.1 16831317 ~ 16831631 (-)
bowfin (Amia calva) G143396 NA non-coding CM030140.1 CM030140.1 4085446 ~ 4088993 (-)