copb2 (LOC106599054)


Basic Information

Item Value
gene id copb2
gene name LOC106599054
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29331101 ~ 29346369 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589768.2
CCAAACCACACGTCATCGATTAGCATCGCACGCAGTTTCAGGAAGTTTCATGGGTTCCACGTCACTACTCGACAGTCCGTCCACAGAAAACGCAGCACCGACTGTAATTATTCGTAATTCAttcacataaagagagacaatcCAGGGATAAAACATGCCTCTCAGGCTGGACATCAAGCGGAAGCTGACAGCCCGGTCAGACCGTGTGAAGAGCGTGGACCTCCACCCGACCGAGCCGTGGATGCTGGCCAGCCTGTACAATGGTAGTGTCTGTGTCTGGAACCACGAAACAcagACCTTGGTGAAGACCTTCGAAGTGTGTGACCTTCCAGTGAGAGCATCGAAGTTTGTAGCCAGGAAGAACTGGGTCATAACCGGAGCGGATGACATGCAGATCCGTGTGTTCAACTACAACACCCTGGAGAGGGTCCACATGTTTGAGGCCCACTCTGACTACATCCGCTGTATCGCCGTGCATCCCACCCAGCCCTACATCCTCACAAGCAGTGACGACATGCTAATCAAGCTGTGGGACTGGGAGAAGAAGTGGTCTTGCAGTCAGGTGTTTGAGGGCCACACCCACTACGTCATGCAGATCGTCATCAATCCTAAAGACAACAACCAGTTTGCCAGCGCTTCTCTGGACAGAACCATCAAGGTGTGGCAGCTGGGCTCCTCCTCTCCTAACTTCACCCTTGAGGGCCATGAGAAAGGAGTCAACTGCATTGACTACTACAGCGGAGGGGACAAGCCATACCTCATATCAGGTGCTGATGACCGTCTGGTCAAGATTTGGGACTACCAGAACAAGACGTGTGTGCAGACCCTGGAGGGCCACGCCCAGAATGTGTCGTGTGTCAGCTTTCACCCTGAGCTGCCTATCATCATCACAGGCTCAGAGGACGGCACTGTGCGTATCTGGCACTCGAGTACATACCGTCTGGAGAGCACGCTGAACTACGGCATGGAgcgcgtgtggtgtgtgtgtggcctgaGAGGCTCCAACAACGTGGCGCTGGGCTACGACGAAGGCAGCATCATCATCAAGCTGGGGCGTGAGGAGCCAGCCATGTCCATGGACACCAGTGGGAAGATCATCTGGGCCAAGCACTCGGAGGTGCAGCAGGCAAACCTGAAGGCCATGGGCGACACGGAGATCAAGGATGGAGAGAGGCTGCCGCTGGCCGTCAaagacatgggcagctgtgagatctacccccagaccatccaGCACAACCCCAACGGAAGgtttgttgtggtgtgtGGAGACGGAGAGTACATCATCTACACTGCTATGGCCCTGAGGAACAAGAGCTTCGGCTCAGCGCAGGAGTTTGTCTGGGCACACGACTCCTCCGAGTATGCCATCAGGGAAAGCAACAGTGTGGTCAAAAtcttcaagaacttcaaggagaagaAGTCTTTCAAGCCAGACTTTGGTGCTGAAGGTATCTATGGAGGCTTTTTGCTAGGCGTCAGGTCAGTGAACGGTCTGGCCTTCTATGACTGGGAAAACACAGAGCTGATCCGCCGCGTCGAGATCCAGCCCAAACATatCTTCTGGTCAGACTCAGGGGAGTTGGTGTGTATAGCCACAGAGGATTCCTTCTTCATCCTGCGCTACCTGTCAGAGAAAGTAGCCGCCTCCCAAGAGAACAACGAGGGAGTGACCGAGGATGGCATCGAAGACGcctttgagGTCCAGGGGGAGATCCAGGAGGTGGTGAAGACAGGCCTATGGGTGGGAGACTGCTTCatctacaccagctctgtcaacaGACTCAACTACTTTGTGGGGGGAGAGATTGTCACCATCGCTCACCTGGACAGAACCATGTACCTCCTGGGCTACATCCCCAAGGACGACCGCCTGTACCTGGGTGACAAGGAGCTGAACATCGTCAGCTACTCCCTACTGGTGTCTGTGCTGGAGTACCAGACAGCTGTGATGCGCCGGGACTTTGGCATGGCCGACAAAGTGCTGCCCACCATCCCCAAGGAGCAGAGGACCCGCGTAGCACACTTCCTGGAGAAACAGGGCTTCAAGCAGCAGGCTCTGGCCGTGTCATCAGACTCAGAGCACAGGTTTGAGCTTGCCCTGCAGCTGGGGGAGCTGAAGATCGCCTATCAGCTGGCTGTGGAGGCAGAGTCGGAGCagaagtggaagcagctggcagaGCTGGCCATCAGTAAGTGCCAGTTTAGCCTGGCCCAGGAGTGCCTTCATCACGCCCAGGACTACGGTGGCCTGCTGCTGCTGGCCACCGCCTCGGGCAACGCCGCCATGGTGGGCAAGCTGGCCGAGGGCGCTGAGCGGGACGGCAAGAACAACGTGGCATTCATGACCTACTTCCTGCAGGGGAAACTGGACCACTGTCTAGAGCTGCTGATCCGGACGAACCGGCTGCCCGAGGCGGCCTTCCTGGCCCGCACTTACCTACCCAGCCAGGTGTCCAGAGTGGTCAAGCTGTGGAGGGAGAGCCTGGCCAAGGTCAACCAGAAGGCGGCTGAGTCACTGGCTGACCCCACTGAGTATGAGAACCTGTTCCCCGGGCTGAAGGAGTCATTCGTGGCCGAGCAGTTCCTCCGTGAGACCTGCCTGGGCAACTCCCTGCCCGCCACCAACTACCCTCTCATCACGCCCAATGAAGAACGTAATATACTAGAGGAGGCCACGGGCTACGAGCCCAAAGGAGCTCCACTCTCCCTCGCTACACCGGTACTGCAGGCTGAAGACAGCGGCGAGGAGACCATGCCGGCCGCAGGCGTGATGGCGTCCGTGTTGGCGGCGGTAGTGGCTGCAGTCGTGATCCCCTCGGAGGCAGAGCCTGAGGTTGCACCTGAGGAGGAAAGCCCCAGCTCATCTGAGTCACAGAAGGACAAGGTCCTGGACGAACTTGAAGACGACCTGGACAACATGGAGCTGGACGACATTGATACCTCGGACGTCAACCTGGACGAGGACTTCCTGGATGActgagaacccccccccctctctcattcatgCTATCAATTTATTTAAGAGACCAAACCCACTTTTGTATTTTTACTTTACCTGTGTTATTTTTGTCCTACAGTGTTTGGAAGACTTAGTAGATTATGATGCTGATTCccaggcgagggaaagagaggagagttatACATGTCTTGAATCTTaaagcagatttttttttaaacttcatcCAGGACCTTCACTAATTATCTGTGCATTGAGTTATATATTTTCACCCCTGTATGTGTTCAATGGCAAATCAGTGTTCATTTACGCCAAATAAATTGCAAATGATGTACATGTATGTCAAA
>XM_021589769.2
CCAAACCACACGTCATCGATTAGCATCGCACGCAGTTTCAGGAAGTTTCATGGGTTCCACGTCACTACTCGACAGTCCGTCCACAGAAAACGCAGCACCGACTGTAATTATTCGTAATTCAttcacataaagagagacaatcCAGGGATAAAACATGCCTCTCAGGCTGGACATCAAGCGGAAGCTGACAGCCCGGTCAGACCGTGTGAAGAGCGTGGACCTCCACCCGACCGAGCCGTGGATGCTGGCCAGCCTGTACAATGGTAGTGTCTGTGTCTGGAACCACGAAACAcagACCTTGGTGAAGACCTTCGAAGTGTGTGACCTTCCAGTGAGAGCATCGAAGTTTGTAGCCAGGAAGAACTGGGTCATAACCGGAGCGGATGACATGCAGATCCGTGTGTTCAACTACAACACCCTGGAGAGGGTCCACATGTTTGAGGCCCACTCTGACTACATCCGCTGTATCGCCGTGCATCCCACCCAGCCCTACATCCTCACAAGCAGTGACGACATGCTAATCAAGCTGTGGGACTGGGAGAAGAAGTGGTCTTGCAGTCAGGTGTTTGAGGGCCACACCCACTACGTCATGCAGATCGTCATCAATCCTAAAGACAACAACCAGTTTGCCAGCGCTTCTCTGGACAGAACCATCAAGGTGTGGCAGCTGGGCTCCTCCTCTCCTAACTTCACCCTTGAGGGCCATGAGAAAGGAGTCAACTGCATTGACTACTACAGCGGAGGGGACAAGCCATACCTCATATCAGGTGCTGATGACCGTCTGGTCAAGATTTGGGACTACCAGAACAAGACGTGTGTGCAGACCCTGGAGGGCCACGCCCAGAATGTGTCGTGTGTCAGCTTTCACCCTGAGCTGCCTATCATCATCACAGGCTCAGAGGACGGCACTGTGCGTATCTGGCACTCGAGTACATACCGTCTGGAGAGCACGCTGAACTACGGCATGGAgcgcgtgtggtgtgtgtgtggcctgaGAGGCTCCAACAACGTGGCGCTGGGCTACGACGAAGGCAGCATCATCATCAAGCTGGGGCGTGAGGAGCCAGCCATGTCCATGGACACCAGTGGGAAGATCATCTGGGCCAAGCACTCGGAGGTGCAGCAGGCAAACCTGAAGGCCATGGGCGACACGGAGATCAAGGATGGAGAGAGGCTGCCGCTGGCCGTCAaagacatgggcagctgtgagatctacccccagaccatccaGCACAACCCCAACGGAAGgtttgttgtggtgtgtGGAGACGGAGAGTACATCATCTACACTGCTATGGCCCTGAGGAACAAGAGCTTCGGCTCAGCGCAGGAGTTTGTCTGGGCACACGACTCCTCCGAGTATGCCATCAGGGAAAGCAACAGTGTGGTCAAAAtcttcaagaacttcaaggagaagaAGTCTTTCAAGCCAGACTTTGGTGCTGAAGGTATCTATGGAGGCTTTTTGCTAGGCGTCAGGTCAGTGAACGGTCTGGCCTTCTATGACTGGGAAAACACAGAGCTGATCCGCCGCGTCGAGATCCAGCCCAAACATatCTTCTGGTCAGACTCAGGGGAGTTGGTGTGTATAGCCACAGAGGATTCCTTCTTCATCCTGCGCTACCTGTCAGAGAAAGTAGCCGCCTCCCAAGAGAACAACGAGGGAGTGACCGAGGATGGCATCGAAGACGcctttgagGTCCAGGGGGAGATCCAGGAGGTGGTGAAGACAGGCCTATGGGTGGGAGACTGCTTCatctacaccagctctgtcaacaGACTCAACTACTTTGTGGGGGGAGAGATTGTCACCATCGCTCACCTGGACAGAACCATGTACCTCCTGGGCTACATCCCCAAGGACGACCGCCTGTACCTGGGTGACAAGGAGCTGAACATCGTCAGCTACTCCCTACTGGTGTCTGTGCTGGAGTACCAGACAGCTGTGATGCGCCGGGACTTTGGCATGGCCGACAAAGTGCTGCCCACCATCCCCAAGGAGCAGAGGACCCGCGTAGCACACTTCCTGGAGAAACAGGGCTTCAAGCAGCAGGCTCTGGCCGTGTCATCAGACTCAGAGCACAGGTTTGAGCTTGCCCTGCAGCTGGGGGAGCTGAAGATCGCCTATCAGCTGGCTGTGGAGGCAGAGTCGGAGCagaagtggaagcagctggcagaGCTGGCCATCAGTAAGTGCCAGTTTAGCCTGGCCCAGGAGTGCCTTCATCACGCCCAGGACTACGGTGGCCTGCTGCTGCTGGCCACCGCCTCGGGCAACGCCGCCATGGTGGGCAAGCTGGCCGAGGGCGCTGAGCGGGACGGCAAGAACAACGTGGCATTCATGACCTACTTCCTGCAGGGGAAACTGGACCACTGTCTAGAGCTGCTGATCCGGACGAACCGGCTGCCCGAGGCGGCCTTCCTGGCCCGCACTTACCTACCCAGCCAGGTGTCCAGAGTGGTCAAGCTGTGGAGGGAGAGCCTGGCCAAGGTCAACCAGAAGGCGGCTGAGTCACTGGCTGACCCCACTGAGTATGAGAACCTGTTCCCCGGGCTGAAGGAGTCATTCGTGGCCGAGCAGTTCCTCCGTGAGACCTGCCTGGGCAACTCCCTGCCCGCCACCAACTACCCTCTCATCACGCCCAATGAAGAACGTAATATACTAGAGGAGGCCACGGGCTACGAGCCCAAAGGAGCTCCACTCTCCCTCGCTACACCGGTACTGGCTGAAGACAGCGGCGAGGAGACCATGCCGGCCGCAGGCGTGATGGCGTCCGTGTTGGCGGCGGTAGTGGCTGCAGTCGTGATCCCCTCGGAGGCAGAGCCTGAGGTTGCACCTGAGGAGGAAAGCCCCAGCTCATCTGAGTCACAGAAGGACAAGGTCCTGGACGAACTTGAAGACGACCTGGACAACATGGAGCTGGACGACATTGATACCTCGGACGTCAACCTGGACGAGGACTTCCTGGATGActgagaacccccccccctctctcattcatgCTATCAATTTATTTAAGAGACCAAACCCACTTTTGTATTTTTACTTTACCTGTGTTATTTTTGTCCTACAGTGTTTGGAAGACTTAGTAGATTATGATGCTGATTCccaggcgagggaaagagaggagagttatACATGTCTTGAATCTTaaagcagatttttttttaaacttcatcCAGGACCTTCACTAATTATCTGTGCATTGAGTTATATATTTTCACCCCTGTATGTGTTCAATGGCAAATCAGTGTTCATTTACGCCAAATAAATTGCAAATGATGTACATGTATGTCAAA

Function

NR:

description
coatomer subunit beta' isoform X2

GO: NA

KEGG:

id description
K17302 COPB2, SEC27; coatomer subunit beta'

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589768.2 False 3303 mRNA 0.55 21 29331101 29346369
XM_021589769.2 True 3300 mRNA 0.55 21 29331101 29346369

Neighbor

gene id symbol gene type direction distance location
LOC110508885 LOC106599059 coding downstream 556 29320737 ~ 29330605 (-)
LOC110508883 LOC106599063 coding downstream 15928 29300650 ~ 29315173 (-)
LOC110508881 ap2m1 coding downstream 37676 29283916 ~ 29293425 (-)
LOC110508879 LOC106599070 coding downstream 61578 29264829 ~ 29269523 (-)
LOC110508877 NA coding downstream 91901 29228842 ~ 29239200 (-)
LOC110508887 LOC106599048 coding upstream 9282 29355651 ~ 29360875 (-)
LOC118944841 LOC106568934 coding upstream 25447 29370881 ~ 29378439 (-)
nmnat3 nmnat3 coding upstream 38503 29384872 ~ 29393924 (-)
LOC110508890 LOC105021148 coding upstream 336236 29682605 ~ 29806734 (-)
slc25a36a LOC106568938 coding upstream 475512 29821881 ~ 29872184 (-)
G2125937 NA non-coding downstream 14722 29316154 ~ 29316379 (-)
G2125887 NA non-coding downstream 31925 29298519 ~ 29299176 (-)
G2125888 NA non-coding downstream 32823 29297806 ~ 29298278 (-)
G2125875 NA non-coding downstream 56621 29176653 ~ 29274480 (-)
G2125943 NA non-coding upstream 3652 29350021 ~ 29350402 (-)
G2125945 LOC106568934 non-coding upstream 9695 29356064 ~ 29378426 (-)
G2125948 NA non-coding upstream 36966 29383335 ~ 29383852 (-)
G2126651 NA non-coding upstream 78280 29424649 ~ 29427466 (-)
LOC118944842 NA other downstream 207359 29118684 ~ 29123806 (-)
G2125813 NA other downstream 252357 29078039 ~ 29078744 (-)
G2125723 NA other downstream 445247 28885468 ~ 28885854 (-)
G2125290 NA other downstream 638631 28692139 ~ 28692470 (-)
G2125270 agla other downstream 667675 28662708 ~ 28663426 (-)
LOC110508917 LOC106598978 other upstream 1054844 30399711 ~ 30401807 (-)
G2127177 NA other upstream 1088066 30434435 ~ 30434854 (-)
G2127455 NA other upstream 1207220 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 1358716 30705085 ~ 30706591 (-)
G2128216 NA other upstream 1897722 31244091 ~ 31244692 (-)

Expression


Co-expression Network