LOC110508917 (LOC106598978)


Basic Information

Item Value
gene id LOC110508917
gene name LOC106598978
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30399711 ~ 30401807 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589828.2
AACCGTGTTGTGATTTTGTCTTcattttgatctctctctctctaggtgagtTCTGGCTTGGTCTTGAGAAGATACGCGCTGTGGCCAAAGATGCAGACTACATCCTCAACGTCATGTTCTCCGACTGGAGGGGTGATTCTGAGACCATCCAGTACCCCATCCGTCTGAGCGGGGAGGAGAGCCACTATGACCTCCACATCCAAGAGACCTCGAACAGCAGCCTGGAGGGCACCCTGGCCACTGAGGCCTCCGGACTGCACTTCTCCatccacagccaagacaatgaccagaacaatgacatcagctGTGCCAAACACCTCTCTGGTGGCTGGTGGTTCAGCAACTGTGGACGTTCCAACCTGAACAGCCACTACTTCATGAGCCCTCCTCCCAAGCATAGGCATCAGAGGAAGCAGGGGGTCTTCTGGAAGACCTGGCGTGGCCACTACTATCCCCTGAAGACCACCGTCATGATGATCGCCCCCGCTGTGATCGAGAACAAGTCATAGAGGAAAGACGCTCAGTATTCTGACAAATTTTCTCCTCTTGAACTGAAACACTGTTAGAGGTGGTTAGCCGATGACTTGGGTAAGCTACCCAGTCAGTCCTGGCTTCACCCAGTGAGACTTCCAACAAAGACAAGGCCATTTTAAAAAACTAAATAACTCATACTTTTCAAAAGTCTTAGAGTCTCTCAGCTAGAGACAAAACCAAACCATGTTTAAAAAGTTAAGAAGTACATGAACATGTGAATCTAGCAGTGGAAAGTTAGCAAGAGTGTTTCACCAAAGCTGTGGCATGAGCTCACTCTTAATCACTGTTTAAAGCAACGCTCAGCCTTGGGACTAATGAATGGAACAGAATGAGGTGAGTTCAAACATGTTTTGTGTTGCAAGAAACCAAGCATTTTCCACATGGTAAGACCCATCTGACGGAGGTTTCTGAATGGTTAGAGCTCTCCCAGAGGTTGAATACTGCCCTCGTTGGCTCGAACCAGCCAATAGAAATCATTTAAAGAAAAATACTTCCGCTGTCTGATCTCTTATTAAACACACTGATGCAGCGAGAGAAACAATTCAGAAGTAGGTCAAAGGTCAAAATGGAGTAACATTCAAATAAACATAGCAGCCAACTCGAAGAAAAAAAACTGTCAAATGAACATAGTATTCAACTCAAAAACAGTAAAATTAACATCCCAGTGGACACAAACTGGTTTAATCAACTTTTGTTTCAACTTAGTTCTcaacgtattgtgacgtggaatctacgtggaaaatacattggatttgaaaagtcatcaactgttgttttgagggtgaaatttcaacgaCAGTATTATCTTTTCACGGTAACCAAATTTAAACCAAGCCAAACCTTATCCACTAATCCAAAATAAAAACTATAGGCtggacagcacctcctactggatgATTGATCTATAGCTACCCTTTAGTCTCCCacccagggttttaaccaagccctgcCTAGCTATGATATTTCTCACTGACTATAACCAATGTGCTATTGTGAGAATGACTGTTAAAATTTCCACTTAAAAATGAAATAGATTCACTGTTACCatcgaagtcattccaaagggtaggtttaaccGAGTAAATGAAATGTGACTATACTATATCACTCATATATTTAGGAT
>TU2432085
ATTCCCTCAGTAGAAAACAAGTGGagttgtcagaggcagagaggACTTTTGCCCCATAGCTCACAAACAAGTTCTATGTTGGCTGCTGTTCGACATAACAGTTTGAAGTTCTAGGCTTTGGAGATATGAAACTGGAGGCTCTTGTTCTAGTTGAATGAGTCATTTATAAATAGGATATTTGTGCCAGCGAAGGGGAAAGGCCACAGACCTTGATGACGTGTACTGATACTGACTATCTGAGgtgagtTCTGGCTTGGTCTTGAGAAGATACGCGCTGTGGCCAAAGATGCAGACTACATCCTCAACGTCATGTTCTCCGACTGGAGGGGTGATTCTGAGACCATCCAGTACCCCATCCGTCTGAGCGGGGAGGAGAGCCACTATGACCTCCACATCCAAGAGACCTCGAACAGCAGCCTGGAGGGCACCCTGGCCACTGAGGCCTCCGGACTGCACTTCTCCatccacagccaagacaatgaccagaacaatgacatcagctGTGCCAAACACCTCTCTGGT

Function

NR:

description
angiopoietin-related protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589828.2 False 1657 mRNA 0.43 2 30399711 30401538
TU2432085 True 522 TUCP 0.50 2 30401213 30401807

Neighbor

gene id symbol gene type direction distance location
LOC110508912 NA coding downstream 95299 30301087 ~ 30304412 (-)
LOC110508910 NA coding downstream 120471 30273893 ~ 30279240 (-)
mast3a LOC106599001 coding downstream 146341 30188885 ~ 30253370 (-)
LOC110508907 LOC106599005 coding downstream 212451 30144035 ~ 30187260 (-)
LOC110508906 LOC106568950 coding downstream 284727 30100641 ~ 30114984 (-)
angptl4 angl4 coding upstream 7733 30409271 ~ 30416644 (-)
LOC110508919 NA coding upstream 40475 30442013 ~ 30447448 (-)
LOC110508217 LOC106598972 coding upstream 228404 30629942 ~ 30649835 (-)
LOC110508927 LOC106598960 coding upstream 299004 30700542 ~ 30704777 (-)
LOC110508928 mrpl34 coding upstream 303547 30705085 ~ 30706591 (-)
G2127124 NA non-coding downstream 68022 30331386 ~ 30331689 (-)
G2127116 NA non-coding downstream 74249 30323398 ~ 30325462 (-)
G2127109 NA non-coding downstream 86003 30313477 ~ 30313708 (-)
G2127108 NA non-coding downstream 87323 30312140 ~ 30312388 (-)
G2127106 NA non-coding downstream 88170 30311204 ~ 30311541 (-)
G2127168 NA non-coding upstream 21331 30422869 ~ 30423078 (-)
G2127171 NA non-coding upstream 27384 30428922 ~ 30429590 (-)
G2127172 NA non-coding upstream 28119 30429657 ~ 30429882 (-)
G2127133 NA non-coding upstream 38739 30440277 ~ 30440998 (-)
LOC118944842 NA other downstream 1275969 29118684 ~ 29123806 (-)
G2125813 NA other downstream 1320967 29078039 ~ 29078744 (-)
G2125723 NA other downstream 1513857 28885468 ~ 28885854 (-)
G2125290 NA other downstream 1707241 28692139 ~ 28692470 (-)
G2125270 agla other downstream 1736285 28662708 ~ 28663426 (-)
G2127177 NA other upstream 32897 30434435 ~ 30434854 (-)
G2127455 NA other upstream 152051 30553589 ~ 30555187 (-)
G2128216 NA other upstream 842553 31244091 ~ 31244692 (-)
G2128242 LOC106584167 other upstream 917745 31319283 ~ 31323364 (-)
G2125253 NA other downstream 1715478 28627055 ~ 28685735 (-)

Expression


Co-expression Network