LOC110509036 (LOC106598444)


Basic Information

Item Value
gene id LOC110509036
gene name LOC106598444
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33518704 ~ 33526697 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589978.2
AAACAGAATGAACCcgtgtactactactaccaggctATTTCAATTAGTTACGATGAAATACTTCAATTCAGGAGCAATTTTACAGCAAAGAATATTTTGCACAGTAGGTGTCAAGAACATTCCGTAGCTGAGCTCAATATTAACATTGTGATAATATAAATACAGTGGAAATGGAAAAGTAGACTAAACGCAGAGAGAACAAATGGCTCCTTTAAGAAAGTCAGCTGGTGCAAATAAAAAGTTCGAAGGAGGAAGTAGGAAGTCGTTTACGAACAAACCAAGCACAAAGAAGAGAAATTGACAATTTCAGACATAAGACAATGGCGGGTATTAAAGCGCTGGTTGGCTTGTCCTTCAGTGGAGCTATTGGCTTGACTTTCCTGCTGTTGGGCTGTGCATTGGAGCAGTATGGGGTGTACTGGCCTCTCTTCGTCCTCATCTTCTACATACTGTCTCCTATCCCCACCTTCATATCCAGAAGGCTCAGTGATGACAGTGACGCCGCCAGCAACGCATGCAGAGAGCTGGCATGCTTCTTCACTACGGGCATTGTGGTGTCTGCGTTCGGGCTTCCCATCATACTGGCCCGGGTTGCATTAATCCAGTGGGGGGCCTGTGGCCTGGTGATGGCTGGCAACGCTGTCATCTTCCTGACCATCCTGGGCTTCTTCCTGGTGTTCGGCGGGGGAGACGACTTCAGCTGGGAGCAGTGGTAGACCGTCTGGATCTCTGGCACCAtcccaaatggacccctagaccctaCGCCCTAtggacttgtggagatctgagattTGACCGGTGCAAGCAATATGGCAGTAGCTTCaccttgccctctgataggctaggtgGAAGTTTCACCATATTGTTTAAACCAATCAAATCTACTCTGATCTCTGAAAGTGCATAGGGTGTAGGGTCTAGGGATCGATTGGGACACAGAGACGGAGGGAGTCAGTCATTCCTGTTATTAACAAGGTTACAGTGGTGGACAGATATGATAAACCAAAACGCTACTACGGCATAACGTCGCTACTAACTGACGTTTTAAGAAGCTGATGCTGACTATTTAATGTCCTATGAGAAAAGGGGGTGGCACCAGGAGTGCCCTCCCCTCCTGGTTAGTGAGGAGGGGGTGGCACTAAACAGGGTGTCTGGGATGTTAATGCACACTGCGATGTCTGTCCTTTTTTTCCTCCACAGACACCTGATCGTTTTTTCTTATAGTATTCGCTCCATTATTCTCTTCAACCTTTTTTTGCCTTACCTGTCCCCTATGCTGAGGGAGAGTCATTGAAAACCAGTGTCCCGgccagcccccccctccccccagcccccccccccctccctaggAACTTGTTGATCTCAGTGAGAAGACAGGATAGGTGTAAGCATGTGGTGAAATATCACCAAGGGGAAACGTTCTTTTAACATCTACACAAGTGTCTAGGGCTAGAGTGGTTGTTTCTGGACCAGGCCCACCTCTCTACATTCATATCTATAAAGCCAGATGCTAGTTTAAGGATCATGATAACTTGTACGTGTGTTATGAGGGATACTGTTGAATGATTTGTTGTAATCACCACTACGCCgtctgtttccacttcatttaGGGAGTATTCTGTTTGTTTGTGGAAATCTTATTTAAGCGTAAGCATTTCAAATGATCTACTCATTCTTACAGTTGATTGTGTGTGtacctttttttttgtttgtatgtttctatttcaTATGATCACTTTGGGTATGACTTCATAACCAGGTCAAGgtttctgtctgtagtttgttgTTTTCAACATGTTGCCCTTCTGCAAATGTTTCCACCAATACCAAAGGCCATTTTTAAGAAAATAAGGTAGACATGATTCATTCCCCCCACTAAGGTTTCTGATGTGTCTATGATTATGAAACACACAGTTCATATTAATTATGAAAACAACATTGTTATGCCATTATAAGCTGTTTGTCTTCACTGAGGACAGAGGCTAACGTAAGGGTTTGTGAATCATTGTCTACATTAGTATGGGAATGTAAACACTATATGTTTTGTAGACCAGGTCTGTTTGTGTTCAAATGAAGTGCCCACATTTCTATTCACCAAAAAACTCATTGACAAGTGCCTGTTaaatatcaacaacaaaaaatgtacttattcaaaaatgttttatataACTTAAGTCACTTTTTACATTCTGTACTGGTAAAgcctgaaaaaaaaaa

Function

NR:

description
leptin receptor related protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589978.2 True 2217 mRNA 0.43 4 33518704 33526697

Neighbor

gene id symbol gene type direction distance location
LOC110509034 LOC106598452 coding downstream 4243 33406673 ~ 33514461 (-)
LOC110509030 LOC106598456 coding downstream 137504 33313433 ~ 33381200 (-)
dynlt5 tctex1d1 coding downstream 205413 33310003 ~ 33313291 (-)
LOC110508227 LOC106598474 coding downstream 211411 33278554 ~ 33307293 (-)
LOC118944830 NA coding downstream 365290 33150005 ~ 33153414 (-)
LOC110509037 LOC106598611 coding upstream 28320 33555017 ~ 33562140 (-)
LOC110508228 NA coding upstream 37238 33563935 ~ 33568603 (-)
LOC110509038 LOC106598425 coding upstream 45413 33572110 ~ 33575991 (-)
trnav-cac-89 NA coding upstream 55863 33582560 ~ 33582632 (-)
LOC110508229 LOC106598404 coding upstream 99754 33626451 ~ 33797286 (-)
G2130409 NA non-coding downstream 85651 33432755 ~ 33433053 (-)
G2130404 NA non-coding downstream 91849 33426418 ~ 33426855 (-)
G2130398 NA non-coding downstream 105341 33412968 ~ 33413363 (-)
G2130394 NA non-coding downstream 118694 33399735 ~ 33400010 (-)
G2130462 NA non-coding upstream 26186 33552883 ~ 33554094 (-)
G2130476 NA non-coding upstream 51095 33577792 ~ 33578201 (-)
G2130484 NA non-coding upstream 67017 33593714 ~ 33594568 (-)
G2130506 NA non-coding upstream 105136 33631833 ~ 33632058 (-)
G2130508 NA non-coding upstream 108866 33635563 ~ 33635926 (-)
G2130393 NA other downstream 119620 33398547 ~ 33399084 (-)
LOC110508997 NA other downstream 1288490 32228406 ~ 32230258 (-)
asip2b agrp2 other downstream 1353682 32062049 ~ 32187519 (-)
LOC110508982 NA other downstream 1490146 32023057 ~ 32029225 (-)
G2128568 NA other downstream 1635564 31882715 ~ 31883140 (-)
G2130771 LOC106598333 other upstream 513509 34040206 ~ 34066665 (-)
G2130780 LOC106598333 other upstream 514741 34041438 ~ 34068073 (-)
LOC110509052 LOC106598333 other upstream 514872 34038788 ~ 34058344 (-)
G2131621 NA other upstream 959172 34485869 ~ 34486176 (-)
G2131641 NA other upstream 989825 34516522 ~ 34518129 (-)

Expression


Co-expression Network