LOC110509037 (LOC106598611)


Basic Information

Item Value
gene id LOC110509037
gene name LOC106598611
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33555017 ~ 33562140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589979.2
ATGTCTGTTGTGACTGAAGTGGACAAGGACACAGGTAGCCCATGTATCCCCTGCCTGGACAGCGAGTGGAACCCCAGCATCTCAATCACCAGTATTCTTCTGAGCATCCAGACCATGCTGTCCAACCCAGTCCTGGAGGGAGCGGTGAACCCCGAAGCTGCTGACATGCTCTGGTCCAGCCCATCCACCTACCACCGTGTGGTGCTGGAATGTGTCAGGGCCAGCCAGGAACTGGAGAGGAACAGGAAAGCTGTGCAGTTGAACTCACACAACAGGCCTGTGAGGAGAATCCCCTTTGAGGATTATCTGAAGACATGGACAAAGATGGCCACCACTAAAGCTGGCTCGTGGATGAGGAAGGAATCCCTGGAGGATCTCATCAAGCGCCCTGAGACCTTTGCCATGTATCATGGGACACCAGACAAGGACTCTCCCATGGGGACACAGTGTGAAACGTTCAGAGCCTTAATGTATGGTACCGTGCACCAGCCTAAGAAGACCAAACCAGTGAGTGAGTGGAGACAGGCGAGGATGGACCAAATGAGAAAGATTTACCTCCTCTACAGAACACCAGACATGCTGACCCCCCAGGTGAATGTGCAGAGAGACTCCATGGCCACCAGGAGTCTCTGTCGAGCACATGACAAACAGCAACAGGACCTCTGGGAGAACGAGGTGGACAAACTGGTGGCCTGGACACACTCACTGTCATTCGAGGAGTTGGAGGAGGAGTGATGCCTCCACGTGCATGTACATACACGCCTTGCAATTAGATACacttgaccaataaaatgtgaaaaCGTCTTGTACTTTATTATTATATagaaatattttcttcttcttgaactgcactgttggttgagggcttgtaagaaagcatttcactgtaaagtctacactgttggttaagggcttgtaagaaagcatttcactgtaaagtctacact

Function

NR:

description
ubiquitin-conjugating enzyme E2 U

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589979.2 True 947 mRNA 0.50 7 33555017 33562140

Neighbor

gene id symbol gene type direction distance location
LOC110509036 LOC106598444 coding downstream 28320 33518704 ~ 33526697 (-)
LOC110509034 LOC106598452 coding downstream 40556 33406673 ~ 33514461 (-)
LOC110509030 LOC106598456 coding downstream 173817 33313433 ~ 33381200 (-)
dynlt5 tctex1d1 coding downstream 241726 33310003 ~ 33313291 (-)
LOC110508227 LOC106598474 coding downstream 247724 33278554 ~ 33307293 (-)
LOC110508228 NA coding upstream 1795 33563935 ~ 33568603 (-)
LOC110509038 LOC106598425 coding upstream 9970 33572110 ~ 33575991 (-)
trnav-cac-89 NA coding upstream 20420 33582560 ~ 33582632 (-)
LOC110508229 LOC106598404 coding upstream 64311 33626451 ~ 33797286 (-)
LOC118944832 LOC106598084 coding upstream 352210 33914350 ~ 33916205 (-)
G2130462 NA non-coding downstream 923 33552883 ~ 33554094 (-)
G2130409 NA non-coding downstream 121964 33432755 ~ 33433053 (-)
G2130404 NA non-coding downstream 128162 33426418 ~ 33426855 (-)
G2130398 NA non-coding downstream 141654 33412968 ~ 33413363 (-)
G2130476 NA non-coding upstream 15652 33577792 ~ 33578201 (-)
G2130484 NA non-coding upstream 31574 33593714 ~ 33594568 (-)
G2130506 NA non-coding upstream 69693 33631833 ~ 33632058 (-)
G2130508 NA non-coding upstream 73423 33635563 ~ 33635926 (-)
G2130514 NA non-coding upstream 87336 33649476 ~ 33649702 (-)
G2130393 NA other downstream 155933 33398547 ~ 33399084 (-)
LOC110508997 NA other downstream 1324803 32228406 ~ 32230258 (-)
asip2b agrp2 other downstream 1389995 32062049 ~ 32187519 (-)
LOC110508982 NA other downstream 1526459 32023057 ~ 32029225 (-)
G2128568 NA other downstream 1671877 31882715 ~ 31883140 (-)
G2130771 LOC106598333 other upstream 478066 34040206 ~ 34066665 (-)
G2130780 LOC106598333 other upstream 479298 34041438 ~ 34068073 (-)
LOC110509052 LOC106598333 other upstream 479429 34038788 ~ 34058344 (-)
G2131621 NA other upstream 923729 34485869 ~ 34486176 (-)
G2131641 NA other upstream 954382 34516522 ~ 34518129 (-)

Expression


Co-expression Network