LOC110509116 (LOC106597376)


Basic Information

Item Value
gene id LOC110509116
gene name LOC106597376
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36798445 ~ 36958711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966569.1
GACTTCTCAATGGAGATCATTGTAGCGACAACACGTAGTTGGAGCTAGGGAGCTGAGCAGCACAGTTATTGCAATCACGTTGAACGCGCCACTGTCTGTGGCAGTGGCATCGTCcggactgtgtgtgagagaggaagaCATCAAACGACAGTAGTGGTAAGGGAAGGTTTATAAGATGTTACAGCGCGGCTTTCTCAACACTTCAACTGTGGCAGTGCCTTTACAATGTGTTGGATTCTTTTTTGGAGCAATGGCTATGTGATTGCGGGTTCCTTTTGAGTGCGTTCCAGAGAGGAAAAGGCTCCAATTATCAACTGCAGGTGTGAAGTAGACGTGTTCTGACACCTTGGCAACCAGCAATCACAATCCATCCGTCTGTCTGCTGAAGGATACACTTGATCGTTAATCACCACCCGGAGTGTCTCTTCTGTTGAACCCCCTCCCCCCAGTTTATTCAGTGAATGGTGGACAAGGCTGGTGGATGGTGGACAACGCCGGTGGATGGTGGACAACACTTCTTCTTGAGTCTTTTCCAGTAAAATTTCAACAAACAAATTGTATCAAAAAAGATGCGACTGAACTGTCCCCCCATGTGGAGTGTGATTAGCGTGTTGACTGTGCTCGTACCCCTTTGGGAGAAGGGCTGCTCTGGCCTGACCTTGAACTCAGTGCCCCTGCATCAGGTCGGGATGTACCAAAGGAGCGGCGAAGGGGGGACACACCACAGGCAGAGGCGCAGCTGGGTGTGGAACCAGTTCTTTGTGCTGGAGGAGTACATGGGGGACGAGCCACTCTACGTGGGCAAGCTGCACTCGGACGTGGACAAGGGTGAAGGGCAGGTGAAGTACGTACTCAACGGAGAGGGAGCTACCTCCATCTTCACCATCGACGAGAACACGGGCGACATCCACGCCACCAAGCGTCTGGACCGCGAGGAGCAGCCTTACTACACGCTCCGGGCTCAGGCCAGGCACCGCCACACCAACCTGCCCGTGGAGCCAGAGTCTGAGTTCGTCATCAAGGTCCAGGATATTAACGACAATGAGCCAAAGTTCCTGGATGGACCCTACTCAGCCAGGGTCCCCGAGATGTCCCCAGTGGGCACATCTGTGGTGACGGTGGTGGCGACTGATGCGGACGACCCCACGtatggaaacagtgccagggtgGTCTACAGTATCCTTGAGGGCCAGCCCTACTTCTCCGTGGAACCAAGAACAGGCGTGGTCAGGACGGCTCTGCCCAACATGGACCGCGAGGCTAGGGAACAGTATCTGCTCGTCATCCAGGCCAAGGACATGGTGGGTCAGATGGGAGGACTCTCCGGGACCACCTCTGTCACGGTGACGCTCACTGACGTCAACGACAACCCACCACACTTCTCTCGCAAGAGCTATCAGTTCAGCGTGCCCGAGTCCCTGCCGGTGGCCACGACGGTAGCCAAGATAAAGGCACTAGACTCAGATGTGGGACCCAATGCTGAGATGGAATACAGGATCGTGGATGGGGACGGCCTGGGACTGTTCCGAATCACCCCCGACCCAGACACACAGGAGGGCCTCATCACTCTGCAAAAGGGCCTGGACTTTGAGACCAAGTCGAGCTACACCCTGCGTGTCGAGGCGTCCAATAGAAACATCGACCTGCGATTCCTGTCCCTGGGGCCGTTTAGCGACACAGCGACAGTGCGCCTCAACGTGCAGAACGTGGACGAGCCGCCCGTCTTCTCCTCGCCGTTCAGCAAGATGGTAATCTCGGAGGAGGCAACGGTAGGCACCACCATCGGGACCATCTTCGCACACGACCCAGACTCCACCAACAGTCCCATCAGATACTCTATAGACCGCAACACCGACTTGGAGCGTTTCTTCAACATAGACGCCACCACCGGTGTCATCAGCACCGCCAAGCCCCTGGACAGAGAGGTTAACGCCGTACACAACATCACCATCTTCGCCACGGAGATCCTGGACCCACTGCAAGTGGGAAAGGGTGTAGTTCTGATCACAGTGACGGACATCAATGACAACGCGCCTGTCTTCGCCATCGAGTATGAGACCTACCTTTGTGAGAGTGCCAGACCTGGACAGGTCATTGAGACCATCAGTGCTGTTGACCGAGACCAGCCTCAGAGTGGACACCGCTTCTTCTTCTCCCTAACCGCTGAGGCTGCTGGGAATCTCAACTTCACCCTGAGAGACAACAAAGaCAACACGGCTTCTGTGCTGACCAAGCGAGGGGGTTTCCAGCGCCGCCACCAGAACGTGTACCGTCTCCCCGTTCTCATCATGGACAATGGGAGCCCCGCCCTCAGCAGCACCAACACCCTGTCCATCCGGGTGTGCGACTGTGACCCTGATGGGATCCCCCAGTCGTGTGGGAGTGAGAACTCCATGCTCTCAGCGGGCCTCAGCACCGGGGCCCTCATTGCCATCCTGGCCTGCATCCTCACACTACTGGtgCTGGTCCTGTTGATCATCACCATGCAGCGACGGAGGAAGAAGGAGCCCTTGATCCTGGACGAGGAGCGTGATGTGCGCGAGAACATTGTGCGCTACGACGACGAGGGCGGCGGCGAGGAGGACACAGAGGCCTTTGACATGGTCGCTCTACGCAACCTCAACGTAGTCCGTGAGAGCGGCAGCAAGAACCGCCGTGACGTCACTCCAGAAGTGCCCACCCTCTTCTCGTCTTCCCGGCCACCGCCGGACAACGGCATCTTCCGCGAGTTCATCTGGGACCGGCTGAAGGAGGCCGACGTGGACCTGTCAGCACCACCCTACGACTCACTGCAGACGTACGCCTTCGAGGGCAGCGGCTCAGCCGCAGAGTCCCTCAGCTCGCTGGATTCGCTGAGCATGGACTCGGAGCAGAACTACGACTACCTCAGCGACTGGGGGCCACGCTTCAAGAAACTGGCAGACCTCTATGGCCACAGCGACGGCGGCAACCTCTTCGTCTCTTAGCCCTCGGTTGAGCCCCGCCGATATGAATAAGGATACAAGAAAGGACATTTTAGATGACGATAGGATGATGCTGTACTCTGAGAGGACATTTGATTGGTGTGGTATAAATGCATCAATGTGGGTTGAGAATTAACTGTAGGATGATGGTTTTCCATTCAAAATGCTTTGTTTTGGGCACTGCATACTGGCTGGATTTTTCAAAGGATGACATTTTGGAGATTTTGTTAGTAATGTTTTAACATGAAATGATGCAAAGCTTAAAACATTGGGATGGCCTCCAGACCCGTTGGAAGGACCTCAACGCACAAATGTCCAGACATTCTCATGTCACAGTGACGTTCAAACGGAACAAGGAGTGAACCGATATCTACGCTTCAGTGGTGATACAACAGTGACATTTTCAAGTACAACATCTTGTCATGGTGAAATGAGTAGCCTGACCTCTTCAACTGGCCCTGTAGTCTGTCCCAGGGTTCACTATGATCTGTAACATTTGTTTCAAACTGATATTTAGGGGTTCACAGCTTTGCTGTAAAACCTATTGTTATTCTTATATTATAATGTTTTCCTTGACATGGTAAAATAACTCAAGCATAGGTTGATAACTTTTGTTTGAATTCGGCACACAAAAACTAGAGGCCATGAGTAACTTGGTCTAAAAGAATGGTACTGATTGACCTATAGGTGGCGTTGTAATACGCAGTCTCATTTAAACCCTCATATCTGCTGCCCAGTATGACCTACAGACTTTAAACTTTGTATGTAGGTGTCTTTCCTCATACTGAACAAATTTACCTCAAGGACCCATAAGGCCAGCCAGGATAGATTTTCCTACATCTTGGACATTTTGGAAAACCTTTGATAAAAATAACATAAATAAGGGATTGGTTAACAGGGCTGAGTAATTATTAAATCTAGAAATCATATTTACGTGTCAATTTAAATCCTTTGTATATCCATTTCACAATGTCCTATCAATTTGCAACTTCTTAGGGTCATCAAAGACATTACCACGATGAACCATGTTAAGTTTGGCATTGATATCGTAAAGGCCGAATTTAGCCGTTTTTATATCAATGTCAAATCATTTCTTCTCAACAATTaaataccttactgtaatagttttCCATTGAAATGGACAATAGTTTTTAGCAAATAACTATTTCTAAAGCAAGACCCCATGGTGTATGTGGGGATGGGAAAACtcaaaactagctgttattggcagggaggtttggaactctttgttattggtctattaaccaatttaccgcctggtgatgtcaccaggtggtaaattgaACTCCCACCCATGCAAACCTTCTGATTAGAACATTcagtgtagattgtattttcaaaacATGGCAGAgttattgacacttttttttataCTACAAATCTATTCCACAGTGGCCTGTGAAACTATTATTGACATCCCTAAAATGAACCACACTTAATTATTATTAACAACTCATTATTTTCATATGTAACGCTCATGCTCAAAACCACATTGTCCTCATAAAAACATACGTCACTTTCACTCCATATTTTGATTGCACTTAAAGGAAGATGCTTCCAACATGATAGAGTGCTTTGTTATTCAATTGATCTTGTGTCCTTTGTCATCCTGTGAACCCTGTTCATTGCTGCTGGCAGGCAGTTATATTCATGGAAGAGATTCTCAAAACAGGATAAATCCTTATGGATTTTACAGCAGGGTTTCATCAATGGTGGATTTGATCAATTCAGGCTTACTCTGGTCCATATTCAGTAGAGCTCACCGTAGCAACATTTTTTGAAACAGAAAACAGAAATGGGTGTTTCTTATTCGACCGGTAGTCCAGtagtctctctcccttttcttccatttggtggcTACCGAACACGGTCACGATCTACAATCCTATAACGGTATCTAGACACCTGTCCGATTTGTCCGCTCTCACGCTCACATTCCGAATGAACATGCTTAGAGTGTCACAATGCCTCTGAGGTTCTGAATGAACATGCTTAGAGTGTCACAATGCCTCTGAGGTTCTGAATGAACATGCTTAGAGTGTCACAATGCCTCTGAACGGTGTAGCAGGGAAGGTGAGATAAGGCAAAGAGACTGGGGTTGGGGGGTAGCGATGAAGAAAACACTATCATGTCACAGCCTGGAAGCCTTGTAAACATCTGCAGTGATTGCACCATATCGGTAAGTTAAAAATGTAAAGCTGTTGTGATTGTTTTATCTATCCTATGAGGTGTTCTAGCAACCATGATGGTTaaatttgttgtttttttagttGTTTTTTACGGAAACATAGCTGTAACAGCATTGGAAAATACAGTTAGTGTTGGGAAACGATTTACAGCAAAGCTGTGGGCACTTGTAAAAATACTAAGCCAAGGAGAATGTCAACTGTTATTTTGCATGCAGTGAGTAGAAATCCAGGATGGAAAAATCAAGGCAAAAAACAGCTGGGAAACAAAACAAATCTAGTTTTTGGTTAAGAGCTCTGATGAGGCCTTATACATTTGATGCTCATTAGTTGGAGAAAACATTACACCCTAAATGGAACCAACACAGTTCTGCATATCCTTTTTCCCACTATCGTGCTGACCCAAACCGTACAATGTTGGCAATATATTTTTTCTCATTGTCCCATTACAACAGTTTCATCAACTATGGATGtgcaacgccccccccccccccccccccccccattgcgtATAGTTCAACAGTACAGTAAAATGTCACTTAAATCCAACAAGTACATTGAAGTACAATGCAGTACAAATGCTTTTATCGAGAGCAACAACATAAGCACCTGTTAAGACCCCCTTATAATATCTTCAGTTTAATTTTCAGCTCATACCAATCTTGATTTATTATCAGCTATTTTGAGGCTGTTGAAAAAATGTATGCCTACAAATGTCTAAAGTTGATTACAAACGTATAATATACATTTTATTATATTATTCTTTACTATAATAAATCGTTATACTGTTGGCTGGAAGTGTTACCAGAAATGAGGAAGACGTGGTCATACTTCTTTAAACAGCCATCCACAGTACAGTATTTGAGTtacataaaaacaaaaaaaatgattttcaGTTAGAAAAACACATTTAATAAATACCTTTCGAGGttttcaatgattacattttagCTAATCTCTACCACAACTGATAATTAAGTCATTCTGCTTCCaaagtgatgatgatgaagattgAGGTTATTTTCTTTAGTGATGGCTGTCATCGTTAAGGAAACACAATTATTTGTTAACTGTCTTGCTAAATGGAATTTTAAAGAGATGTCGAAATCTCGTCAGGCCTGGCTCAAAGTTTTAATAAATATACATTTAATTAAGCAGATTGCCAGAGATCATCTGCACTTGGATGAGACACTAGGGGAGAGGCTTCGCTTTACCACACAAATTAGTGTATACaaaaagatatatacacaaaTTAGTGTATACAAAAAGAGATATACACAAATTAGtgtatacaaaaatatatatacacaaattAGAACTATTGTCAATAATATTATGAGTTTGTTCTATATTTCTGTGGCGTAGAAAGTTGGATTTTATCCATGAAGCATTTCGTTTGCACACATTCTTAAATGGACTCAGTTGTTGTTCTTGTTTCGGTATTAGAATACTGCAAACCCTTAAGGTTTGCCACGAAATATTGATGTcataattcattttttaaaagaaCTTGAGAATTTAGGAGTACCTGCACTTCTCATTAATTGGGAtatttatttttcctattttacATTATGGAAACAACTTCATGATTATTTGgttgatgtttttttggggggcggGGTTTGTTACGAAAGCATTGTATGTACGCACGGCTTGTTTTCACTCGGATCTAAGGAATATGACACCTGGTGAATGTCAAAGTGGCCTTGCCTGTTTAGGAAAAGAGAAAAGGGACAACTGGTGTCAAGTGGCTGATAAGGTGTTCACATGAGGACATCCTCAGTCTCAGCAGGACTTGTGTCCGTCTCACCGTAGACTGACGACATTCTGAACCCCAACACAACTCAACACTACTCAGCAGACAATCACTGCTCTGTTTTTTTCTTCCCTCAGCCCAGCCAGTCTTGTGTATTTGTGCATAGAGAGAGGAAACTGAAActcacatttttttttgttgtaaaggAACTGTAAAGGAAATGCCGACAATGGCTCTTGACTGTAAGTCACCTGTTCAACTTTCAATAAAGTCCTAAATATGGTTTCA
>TU2439371
TTAATAAATACCTTTCGAGGttttcaatgattacattttagCTAATCTCTACCACAACTGATAATTAAGTCATTCTGCTTCCaaagtgatgatgatgaagattgAGGTTATTTTCTTTAGTGATGGCTGTCATCGTTAAGGAAACACAATTATTTGTTAACTGTCTTGCTAAATGGAATTTTAAAGAGATGTCGAAATCTCGTCAGGCCTGGCTCAAAGTTTTAATAAATATACATTTAATTAAGCAGATTGCCAGAGATCATCTGCACTTGGATGAGACACTAGGGGAGAGGCTTCGCTTTACCACACAAATTAGTGTATACaaaaagatatatacacaaaTTAGAACTATTGTCAATAATATTATGAGTTTGTTCTATATTTCTGTGGCGTAGAAAGTTGGATTTTATCCATGAAGCATTTCGTTTGCACACATTCTTAAATGGACTCAGTTGTTGTTCTTGTTTCGGTATTAGAATACTGCAAACCCTTAAGGTTTGCCACGAAATATTGATGTcataattcattttttaaaagaaCTTGAGAATTTAGGAGTACCTGCACTTCTCATTAATTGGGAtatttatttttcctattttacATTATGGAAACAACTTCATGATTATTTGgttgatgtttttttggggggcggGGTTTGTTACGAAAGCATTGTATGTACGCACGGCTTGTTTTCACTCGGATCTAAGGAATATGACACCTGGTGAATGTCAAAGTGGCCTTGCCTGTTTAGGAAAAGAGAAAAGGGACAACTGGTGTCAAGTGGCTGATAAGGTGTTCACATGAGGACATCCTCAGTCTCAGCAGGACTTGTGTCCGTCTCACCGTAGACTGACGACATTCTGAACCCCAACACAACTCAACACTACTCAGCAGACAATCACTGCTCTGTTTTTTTCTTCCCTCAGCCCAGCCAGTCTTGTGTATTTGTGCATAGAGAGAGGAAACTGAAActcacatttttttttgttgtaaaggAACTGTAAAGGAAATGCCGACAATGGCTCTTGACTGTAAGTCACCTGTTCAACTTTCAATAAAGTCC
>TU2439370
TTTTTATATCAATGTCAAATCATTTCTTCTCAACAATTaaataccttactgtaatagttttCCATTGAAATGGACAATAGTTTTTAGCAAATAACTATTTCTAAAGCAAGACCCCATGGTGTATGTGGGGATGGGAAAACtcaaaactagctgttattggcagggaggtttggaactctttgttattggtctattaaccaatttaccgcctggtgatgtcaccaggtggtaaattgaACTCCCACCCATGCAAACCTTCTGATTAGAACATTcagtgtagattgtattttcaaaacATGGCAGAgttattgacacttttttttataCTACAAATCTATTCCACAGTGGCCTGTGAAACTATTATTGACATCCCTAAAATGAACCACACTTAATTATTATTAACAACTCATTATTTTCATATGTAACGCTCATGCTCAAAACCACATTGTCCTCATAAAAACATACGTCACTTTCACTCCATATTTTGATTGCACTTAAAGGAAGATGCTTCCAACATGATAGAGTGCTTTGTTATTCAATTGATCTTGTGTCCTTTGTCATCCTGTGAACCCTGTTCATTGCTGCTGGCAGGCAGTTATATTCATGGAAGAGATTCTCAAAACAGGATAAATCCTTATGGATTTTACAGCAGGGTTTCATCAATGGTGGATTTGATCAATTCAGGCTTACTCTGGTCCATATTCAGTAGAGCTCACCGTAGCAACATTTTTTGAAACAGAAAACAGAAATGGGTGTTTCTTATTCGACCGGTAGTCCAGtagtctctctcccttttcttccatttggtggcTACCGAACACGGTCACGATCTACAATCCTATAACGGTATCTAGACACCTGTCCGATTTGTCCGCTCTCACGCTCACATTCCGAATGAACATGCTTAGAGTGTCACAATGCCTCTGAGGTTCTGAATGAACATGCTTAGAGTGTCACAATGCCTCTGAACGGTGTAGCAGGGAAGGTGAGATAAGGCAAAGAGACTGGGGTTGGGGGGTAGCGATGAAGAAAACACTATCATGTCACAGCCTGGAAGCCTTGTAAACATCTGCAGTGATTGCACCATATCGGTAAGTTAAAAATGTAAAGCTGTTGTGATTGTTTTATCTATCCTATGAGGTGTTCTAGCAACCATGATGGTTaaatttgttgtttttttagttGTTTTTTACGGAAACATAGCTGTAACAGCATTGGAAAATACAGTTAGTGTTGGGAAACGATTTACAGCAAAGCTGTGGGCACTTGTAAAAATACTAAGCCAAGGAGAATGTCAACTGTTATTTTGCATGCAGTGAGTAGAAATCCAGGATGGAAAAATCAAGGCAAAAAACAGCTGGGAAACAAAACAAATCTAGTTTTTGGTTAAGAGCTCTGATGAGGCCTTATACATTTGATGCTCATTAGTTGGAGAAAACATTACACCCTAAATGGAACCAACACAGTTCTGCATATCCTTTTTCCCACTATCGTGCTGACCCAAACCGTACAATGTTGGCAATATATTTTTTCT

Function

GO:

id name namespace
GO:0060034 notochord cell differentiation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966569.1 False 7217 mRNA 0.46 12 36798445 36958711
TU2439371 False 1063 lncRNA 0.37 2 36798459 36799581
TU2439370 True 1534 lncRNA 0.38 2 36800056 36801630

Neighbor

gene id symbol gene type direction distance location
LOC110509111 LOC106597319 coding downstream 240913 36526794 ~ 36557532 (-)
LOC110508244 LOC106597000 coding downstream 344158 36443223 ~ 36454287 (-)
abcf2a abcf2 coding downstream 361428 36424954 ~ 36437017 (-)
faim2a LOC106597016 coding downstream 378429 36400409 ~ 36420016 (-)
LOC118944889 LOC100380659 coding downstream 399686 36391274 ~ 36398759 (-)
LOC118944834 NA coding upstream 41812 37000523 ~ 37001147 (-)
impa1 impa1 coding upstream 355900 37314611 ~ 37333488 (-)
fbxl7 fbxl7 coding upstream 378814 37337525 ~ 37470844 (-)
LOC110509120 mplkip coding upstream 512745 37471456 ~ 37473548 (-)
inhbab inhba coding upstream 588101 37546812 ~ 37561210 (-)
G2133391 NA non-coding downstream 1084 36796424 ~ 36797361 (-)
G2133387 NA non-coding downstream 10021 36788193 ~ 36788424 (-)
G2133384 NA non-coding downstream 13864 36784377 ~ 36784581 (-)
G2133370 NA non-coding downstream 55429 36742499 ~ 36743016 (-)
G2133368 NA non-coding downstream 56874 36741227 ~ 36741571 (-)
G2133481 NA non-coding upstream 5308 36964019 ~ 36964231 (-)
G2133483 NA non-coding upstream 6476 36965187 ~ 36965469 (-)
G2133531 NA non-coding upstream 61177 37019888 ~ 37020521 (-)
G2133542 NA non-coding upstream 72942 37031653 ~ 37031856 (-)
G2133554 NA non-coding upstream 81906 37040617 ~ 37040853 (-)
G2133007 NA other downstream 535115 36263002 ~ 36263330 (-)
G2132966 NA other downstream 548670 36235515 ~ 36249775 (-)
G2132971 NA other downstream 573066 36224213 ~ 36225379 (-)
LOC118944844 riok1 other downstream 773244 36023714 ~ 36025735 (-)
LOC110509127 LOC106596915 other upstream 808007 37766370 ~ 37996222 (-)
G2134625 NA other upstream 1169418 38128129 ~ 38130407 (-)
G2135034 LOC106596897 other upstream 1560860 38519571 ~ 38526920 (-)
G2135837 NA other upstream 2046750 39005461 ~ 39006050 (-)
LOC110509145 ankrd12 other upstream 2845084 39778552 ~ 39829207 (-)
G2133399 NA non-coding upstream 10198 36811828 ~ 36812038 (-)
G2133401 NA non-coding upstream 11949 36813579 ~ 36813826 (-)
G2133405 NA non-coding upstream 14994 36816624 ~ 36816826 (-)
G2133406 NA non-coding upstream 16372 36818002 ~ 36819983 (-)
G2133407 NA non-coding upstream 18396 36820026 ~ 36820251 (-)

Expression


Co-expression Network