G2113766 (socs6)


Basic Information

Item Value
gene id G2113766
gene name socs6
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19391382 ~ 19394523 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2417191
TATTAACAATCATAAACACCCCTCCTTTAACTGCATTGAAGATGTGCAATAAATTGAAGTACAGCCTttcaagagggagggaggggtgagacaTACCAAAACAAGTAGGTAGCATTTCATGACCTGAAAAGTAACAAGGTGAGGCATTTTATCCTTATACTTACAGTGACAGGCAAACAGTCAAGTTTAGGCTGCACAAACAAGCCATTATCTCGATTTATGCCTATACAGTCGATGACGATTAGTTCTCCCAAATTACAGCATCAGATGTGTTGTACTTAAATTTTCATTCTCCATATACGCAATATAATTAACATGCAATGAGAAACCATCACTGAAGCAAAAGAAAAACAACTTTACTAAAGACTGAGCAGAGAGAACTTTCAGGTATCAAACTcatactagctagtagctacagtACTAACAAACTGGTTTAATGTAAGACAACAAACCACATAGGACAATGCAGAAATGTGGAGTGTAGTAACGATTAGAACCATTTGTGCTTTATATAACAAAACACTTGGCTCATCAAAACACAATTAAAAGAAATAATCCAATGCTAATTTCTTAAATATAGATTTGATTACGGTTCAATTTCAATCCTTTGCTTTGAGGTTGGGAGTATAACTGTatgctctatatatatatatcagttgtTGGCATTGGCTGTTGAACAGATCACTAGATAGGGAGACATTGTACTGTGTTACATGTATTGAAATCAAATTCACAAAAAGTATTTGTAACAGCCAAgaaaaagggtaaaaaaaaaatgtaaaaatgaggACTAAGTCAATATATCACTGATCAAAAATGTGCAAGAAAGTCCAACTGAGTTTAATTTAAGCCCTTCAGTAGTGCTTTTCCTGCAAGTAATCTTTCATCTTGTTTGGCAAAGGCAACTTCTGGATAAGGTCGATCCGTGTGTACTGACGGATGACAAACCGACAGAGGTACTGCATGGAGCGCACCTGCATAAACCTTGAGATAGGGTTTGTAAGTCGGACAGGATACATTGCAGTCCCTGGTGTGCGAGATCGTGAATAGCAGAAGGCTCCACTCTCAGAATCTATGATTGAACATTCTATGAGTTCCACTATTGATATGTGACCCTCCACATCTGGCTGTTCGTAGAAACTGAAACTACCATTGGAGTGTTCAATCCTGGTGTGGAGGGTCTTACCCTGTGAACGAAAGCTCAAGCTCAAAAGATAGCGATCGTCTGAGCTGTCTCGCACCAAGAATGACCCATCTGGCAGGCTGGCAAGTTTTTCCTCAGCTTCCCAACGCGTTATAGGACCCCAGTACCAACCCTGCTTGGCCAGTTTCTTTAGCTCTACTGTAAGGCTGGTTACAATCATGGGCCCGCTGTGCTGAACAGCATCATAAACCCTGCCAACGCCAGGGGCTGAATTGGGGTCAAAGTTGAGATGATGCAAAACTCTCTCTGCACCATGTGAGTGAGAAGAACCACCATATACTAGAAAACTCCTTCGGATGTGACTACCAGGTGGTAGAGagagcaagggggagagaggaggctcTATTCTAGAGTCCTGAATCAAGGCACATTCAGCATCAGAGAGCAGTCGATTCACCGATGGGTCCATGAATATATCTGGTGATATCAGCTTCTCCTGGTCAATGGGCTCTTCATCTGCAAAAGGAGGGAATTGCTCAGGCTGAGGCACCTCATGCATTGGAGAGGAACTATCCAAACCTTCTGCAGGGTCAAGTTCATCATCTATAGGCATTGCATAGTGTATATAGTCCTGAGATGCTAGTCCAATGATGGCAGGTACATTTTCATGATCAATACCTAGATGCAAATCACCATTCTGAGGCTTAGTGTTCTCGGTTGAATCCTGAAAAAGCGTTTCCCTCTGGGGGTCTGGGAATTCTTTCAGAATGCCATTCAGAGATGGGCTTGGGTCTGATGAAtgtatcatagctttcactttCCCATCCATCCTAATGCATGTTTCCTCAGAATTTGCTGCCCTGAGGGCCCATGGCGTGGGGCTATAATGGTGACTATTAGATCTTAGATGGTGTTGTGATTTGACATCATTAAAGAATATGGGTGCTGAGGAGCACGAGAATGTGTCATCTTCACTGGTCACCGATGTGGAACTttcctttattttatttttctgcttTGCCGAAAGCCTTCTTTTCAGTGATCCCATAAGACTCTCACCCTTGGAGCGGTTCTTAGGGCCTTTCTCCTCCTCATGATTGAAGTCGTTGCGAACAAGTTCTTTGCTGTAACATTTTCCAAACACTGAATCTGTTGAGATGTCGGTAGCTGAATTTGGCTGTGGTACAAtatcctttccctcctctctgctTTTTAGGTTGAATGACTTTCGTATCGTTTTCAGACAGATTTTCTTCATTGTGGAAGTCCCTCAGACGTGGGGAGGCTCATGGATGTATGATGGCCACAAAGGTTGTCCTCCAAAAGCTGTCATCCCTAGCTAGAACTTTTCAGTCTCCCTTCCTGTCGTTGTCCTTTG
>TU2417195
ATTTTCATTCTCCATATACGCAATATAATTAACATGCAATGAGAAACCATCACTGAAGCAAAAGAAAAACAACTTTACTAAAGACTGAGCAGAGAGAACTTTCAGGTATCAAACTcatactagctagtagctacagtACTAACAAACTGGTTTAATGTAAGACAACAAACCACATAGGACAATGCAGAAATGTGGAGTGTAGTAACGATTAGAACCATTTGTGCTTTATATAACAAAACACTTGGCTCATCAAAACACAATTAAAAGAAATAATCCAATGCTAATTTCTTAAATATAGATTTGATTACGGTTCAATTTCAATCCTTTGCTTTGAGGTTGGGAGTATAACTGTatgctctatatatatatatcagttgtTGGCATTGGCTGTTGAACAGATCACTAGATAGGGAGACATTGTACTGTGTTACATGTATTGAAATCAAATTCACAAAAAGTATTTGTAACAGCCAAgaaaaagggtaaaaaaaaaatgtaaaaatgaggACTAAGTCAATATATCACTGATCAAAAATGTGCAAGAAAGTCCAACTGAGTTTAATTTAAGCCCTTCAGTAGTGCTTTTCCTGCAAGTAATCTTTCATCTTGTTTGGCAAAGGCAACTTCTGGATAAGGTCGATCCGTGTGTACTGACGGATGACAAACCGACAGAGGTACTGCATGGAGCGCACCTGCATAAACCTTGAGATAGGGTTTGTAAGTCGGACAGGATACATTGCAGTCCCTGGTGTGCGAGATCGTGAATAGCAGAAGGCTCCACTCTCAGAATCTATGATTGAACATTCTATGAGTTCCACTATTGATATGTGACCCTCCACATCTGGCTGTTCGTAGAAACTGAAACTACCATTGGAGTGTTCAATCCTGGTGTGGAGGGTCTTACCCTGTGAACGAAAGCTCAAGCTCAAAAGATAGCGATCGTCTGAGCTGTCTCGCACCAAGAATGACCCATCTGGCAGGCTGGCAAGTTTTTCCTCAGCTTCCCAACGCGTTATAGGACCCCAGTACCAACCCTGCTTGGCCAGTTTCTTTAGCTCTACTGTAAGGCTGGTTACAATCATGGGCCCGCTGTGCTGAACAGCATCATAAACCCTGCCAACGCCAGGGGCTGAATTGGGGTCAAAGTTGAGATGATGCAAAACTCTCTCTGCACCATGTGAGTGAGAAGAACCACCATATACTAGAAAACTCCTTCGGATGTGACTACCAGGTGGTAGAGagagcaagggggagagaggaggctcTATTCTAGAGTCCTGAATCAAGGCACATTCAGCATCAGAGAGCAGTCGATTCACCGATGGGTCCATGAATATATCTGGTGATATCAGCTTCTCCTGGTCAATGGGCTCTTCATCTGCAAAAGGAGGGAATTGCTCAGGCTGAGGCACCTCATGCATTGGAGAGGAACTATCCAAACCTTCTGCAGGGTCAAGTTCATCATCTATAGGCATTGCATAGTGTATATAGTCCTGAGATGCTAGTCCAATGATGGCAGGTACATTTTCATGATCAATACCTAGATGCAAATCACCATTCTGAGGCTTAGTGTTCTCGGTTGAATCCTGAAAAAGCGTTTCCCTCTGGGGGTCTGGGAATTCTTTCAGAATGCCATTCAGAGATGGGCTTGGGTCTGATGAAtgtatcatagctttcactttCCCATCCATCCTAATGCATGTTTCCTCAGAATTTGCTGCCCTGAGGGCCCATGGCGTGGGGCTATAATGGTGACTATTAGATCTTAGATGGTGTTGTGATTTGACATCATTAAAGAATATGGGTGCTGAGGAGCACGAGAATGTGTCATCTTCACTGGTCACCGATGTGGAACTttcctttattttatttttctgcttTGCCGAAAGCCTTCTTTTCAGTGATCCCATAAGACTCTCACCCTTGGAGCGGTTCTTAGGGCCTTTCTCCTCCTCATGATTGAAGTCGTTGCGAACAAGTTCTTTGCTGTAACATTTTCCAAACACTGAATCTGTTGAGATGTCGGTAGCTGAATTTGGCTGTGGTACAAtatcctttccctcctctctgctTTTTAGGTTGAATGACTTTCGTATCGTTTTCAGACAGATTTTCTTCATTGTGGAAGTCCCTCAGACGTGGGGAGGCTCATGGATGTATGATGGCCACAAAGGTTGTCCTCCAAAAGCTGTCATCCCTAGCTAGAACTTTTCAGTCTCCCTTCCTGTCGTTGTCCTTTG

Function

symbol description
socs6 Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Acts upstream of or within proteasomal protein catabolic process. Located in immunological synapse.

NR:

description
suppressor of cytokine signaling 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2417191 False 2522 lncRNA 0.42 2 19391382 19394523
TU2417195 True 2240 lncRNA 0.43 2 19391664 19394523

Neighbor

gene id symbol gene type direction distance location
LOC110508686 LOC106599593 coding upstream 16814 19372009 ~ 19374568 (+)
LOC110508681 LOC106599307 coding upstream 69280 19217481 ~ 19322102 (+)
LOC110508679 LOC106599305 coding upstream 182312 19205372 ~ 19209070 (+)
LOC110508675 LOC106599295 coding upstream 379741 18986697 ~ 19011641 (+)
LOC110508672 NA coding upstream 525968 18849186 ~ 18865414 (+)
LOC110508689 LOC106599321 coding downstream 45102 19439625 ~ 19458620 (+)
LOC118944897 NA coding downstream 56335 19450858 ~ 19450910 (+)
LOC110508179 LOC106599327 coding downstream 136520 19531043 ~ 19542347 (+)
LOC110508279 LOC106599328 coding downstream 191570 19586093 ~ 19589514 (+)
LOC110508695 LOC106599333 coding downstream 229309 19623468 ~ 19636825 (+)
G2113762 NA non-coding upstream 7074 19384066 ~ 19384308 (+)
G2113761 NA non-coding upstream 7650 19383500 ~ 19383732 (+)
G2113662 NA non-coding upstream 13045 19376099 ~ 19378337 (+)
G2113758 NA non-coding upstream 15746 19375431 ~ 19375636 (+)
G2113744 NA non-coding upstream 42503 19347320 ~ 19348879 (+)
G2113979 NA non-coding downstream 5503 19400026 ~ 19400242 (+)
G2113990 NA non-coding downstream 14004 19408527 ~ 19408805 (+)
G2114016 NA non-coding downstream 74054 19468577 ~ 19468844 (+)
G2114039 NA non-coding downstream 78047 19472570 ~ 19473353 (+)
G2114074 NA non-coding downstream 136270 19530793 ~ 19531013 (+)
G2113578 NA other upstream 314964 19076077 ~ 19076418 (+)
G2113059 NA other upstream 722886 18667115 ~ 18668496 (+)
G2112127 NA other upstream 1487458 17903198 ~ 17903924 (+)
G2111491 NA other upstream 1635801 17754937 ~ 17755581 (+)
G2111457 NA other upstream 1682753 17708256 ~ 17708629 (+)
G2115369 NA other downstream 1047210 20441733 ~ 20442169 (+)
LOC110508722 LOC106569260 other downstream 1446047 20840508 ~ 20842019 (+)
G2116347 NA other downstream 1979972 21374495 ~ 21375078 (+)
smg7 smg7 other downstream 3685893 23056778 ~ 23087821 (+)

Expression


Co-expression Network