LOC110521728 (LOC106584174)


Basic Information

Item Value
gene id LOC110521728
gene name LOC106584174
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 32166645 ~ 32188488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599531.2
gtcctaaagcacactgaAGCCAGGTTTTGTATAACAGTGCAATGATAAAACTTGAAGGACAagaatgcaatttcagaatgtggggggggcTCATGTCCCCACCGTCCCTATTGAAAGTTGTACCCCTGGGCCTGGCATACAGATAGTGAAGTGGGTGCATGATTTAATATCAGTGTAGGATGCACAAACTGCCCCCACATTATGGTTCATTTTCAGTAGCCCCGCCCACTCCGAGTTTGGCACGTCTTAAATTACTCTATGGCTCGCACGCTGAGAGGAGTATGCTCATGGTTTGCTTGGGGGGAGATAGGGGAACGTTGTAGAGGCACTGCCAAGAAGGTGAGCTCAACCTCAAACCACATTCACCACCTCTATAATATCCAATATGGCTGAAGGAATGCCTTCATGGACCTCCGACAGGTTTGTTGATAAAATGTACATTTCAAAGAGAAGTATCAGGAAAAACGTAATGAACAAAATGCATTACGTTTCCCACATGCCCTCAGAGAATGTAACAGTCAGCACTGCTTACAAAGTGGAAAGTGACTCTAACCCCTCTGATAATGACGACACCGACTCCCTCTCAGGTAGTAGCTTCACCGGGATGATTTATTTAAACccacaaacacctacctggactCTAGCTGAGAAGTTTACTGAACTCAActctggagaagacaagagacttTCTACCTATCAGGACCTCTGTGGTCCTCCAGGTTCACCCACGGCCATTGAACATAATATTCCCAATAGGAGAGGGTCTACTGGCGTGTATGGGGTCTACCTAGACTCGTCACAACAAGAGGAAGGCAACATCAAGAAGGTTTCTAAAAGGAGACCGCAGAGGAAAGTTTCTAGCGGGAATCCTTCCGATCTGAAGCTGCATCTGGTGAGAGAGATCAGGCCCAAACCCAACGAGGCTCTGTCTGATGTGCATTGTGATGTGCGTGAGATGTTTGATGTGTGTGGGAAAAATGGAAATGAGAAGAGTGGAGTATCACTAGTAATTCCCCCTCCATTAAACAAGGCTGTGGCCATGATTGATGCCTGTGAGAAGAATAAGGTGCCTATAGTGTTTACTGCCATGAAGAAACGTGGAgtagagggagacacagagaacCGGCCCTATAAGTGCACTCACTGCAACTGGGCCTTTAAGAAGTCCAGCAATCTGCAGAGTCATCTGgatactcatagtggcctgaagGCTCATGTGTGTGACCTATGCGGCAAGGCCTATTCCCACCAGGGCACACTGCAGCAGCACAAGCGCCTGCACACCGGAGAGAGACCGTACCACTGCCCCTTCTGTGACAAGACCTACATCTGGTCCTCTGATTACCGCAAGCACATCCGCACGCACACCGGAGAGAAGCCATATGTGTGCGAGACCTGTGGCAAGGACTTTGTGCGCTCCTCGGACCTGCGGAAGCACGAGCGTAACATGCACACCAACAACAAACCATTTCCATGTACGCAGTGTGGCAAGACCTTCAACAAGCCGCTGTCCCTGCTCCGCCATGAGCGGACCCATCTAGGCGAGCGGCCCTTCTGCTGTTCTGTTTGCGGGAAAGCCTTTGCCGTGGCCAGCCGCATGGCAGAGCACCAGATGGTGCACACCGGGGTGAGACCCTACACCTGCCTGGTCTGTTCTAAATCCTTCACCAAGTCCTCCAACCTGCTGGAGCATCAGGCCGTCCACAGTGGCATCCGCCCCCACAAATGCTCCCAGTGCAGGGTGGCGTTCGCCATGGTGTCTCGCTTGGTCCGTCACCAGTGCGTCCATACCGGAGAGAGGCCCTTCAACTGCACAGGCTGCAGCATGTCCTTCAGCCGAACAACTGCTCTGAAGCGCCACCAGGAGCAGATGTGTGCCGGGAGGATCTTTGTATGTGTGAAGTGTGACAAGGCTTTTCAGTGTGCCTCTCAGCTCACTGAGCACATGCTGAGCCATGACTCTACTGTTGCTGCTTCAGCTGTCGGAAACACAGACAACTGATTGATGCTATTGATGTTTGGGAGCTACCCTCTCATATAGTACACACTGTTGGTTTAGTCAACCTTATTGATATTTACATGCTAGGGCAACATCCTGCTAGTCTGCTAACCTTTAAGGATCTTCTGACAATGttctaaaatgcattcaaaaaaatattatatttaatTGTTCTATTGTGAAGCCTGAGTTTGGCTGGGAAAAAAAGTACAATTGTTTAGGCAGATGTATGACGCTCAGAAATTATATGTAgcaaatttagattttttttgttgttgatgtttttgcatgtacattgattaatGAATCTTATGCTAGTcaaatacacagttgaagtcggaagtttacatacaccttagccaaatacatttaaactcagtttttcacaattcctgacatttaatcctagtaaaacttccctgtcttaggtcagtgaggatcaccact

Function

NR:

description
zinc finger protein 648-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599531.2 True 2446 mRNA 0.48 2 32166645 32188488

Neighbor

gene id symbol gene type direction distance location
LOC110521726 LOC106584172 coding downstream 36890 32125355 ~ 32129755 (-)
LOC110521720 LOC106584168 coding downstream 230514 31911534 ~ 31936131 (-)
LOC110521718 LOC106584166 coding downstream 271818 31799783 ~ 31894827 (-)
gfi1ab LOC106584164 coding downstream 370360 31784332 ~ 31796285 (-)
LOC110521712 LOC106584159 coding downstream 533346 31503560 ~ 31633299 (-)
gs01 gs01 coding upstream 60805 32249293 ~ 32253704 (-)
LOC110521732 LOC106584180 coding upstream 299752 32488240 ~ 32491162 (-)
lrrc41 LOC106584186 coding upstream 1452732 33641220 ~ 33648927 (-)
LOC110521741 LOC106584188 coding upstream 1497553 33686041 ~ 33710890 (-)
LOC110521743 LOC106584191 coding upstream 1533431 33721919 ~ 33728388 (-)
G2224477 LOC106572245 non-coding downstream 153366 32010968 ~ 32013279 (-)
G2224456 NA non-coding downstream 177040 31989392 ~ 31989605 (-)
G2224452 NA non-coding downstream 181299 31985108 ~ 31985346 (-)
G2224451 NA non-coding downstream 182252 31984161 ~ 31984393 (-)
G2224398 LOC106584167 non-coding downstream 264110 31897093 ~ 31902535 (-)
G2224649 NA non-coding upstream 92738 32281226 ~ 32281657 (-)
G2224678 NA non-coding upstream 114112 32302600 ~ 32302815 (-)
G2224901 NA non-coding upstream 165587 32354075 ~ 32354309 (-)
G2224945 NA non-coding upstream 228580 32417068 ~ 32417312 (-)
G2224950 NA non-coding upstream 234588 32423076 ~ 32423323 (-)
G2223487 NA other downstream 891502 31274720 ~ 31275143 (-)
G2221180 NA other downstream 2692970 29468643 ~ 29473675 (-)
lnx1 lnx1 other downstream 3784370 28307617 ~ 28382340 (-)
G2219602 NA other downstream 4302577 27863404 ~ 27864068 (-)
G2219594 NA other downstream 4321244 27844874 ~ 27845401 (-)
G2224948 NA other upstream 233244 32421732 ~ 32422047 (-)
G2226519 NA other upstream 1440634 33629122 ~ 33629894 (-)
G2226745 NA other upstream 1620891 33809379 ~ 33809894 (-)
G2227478 NA other upstream 2122654 34311142 ~ 34323655 (-)

Expression


Co-expression Network