LOC110521744 (LOC106584192)


Basic Information

Item Value
gene id LOC110521744
gene name LOC106584192
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 33835382 ~ 33919803 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599575.2
gaagaggagagagacagggcgaAGAGGATCTTTGTGTGATTCCTGCCATATCTGATGTTATCCGGTAGGTAGAGACACTGAGGCCCGTGTTGTCGGTCGGTCCGACTGGTAGCCAGTTAAGTCATTCAGCCTCAGTACCAGACAGAGTGCACTCCGCTCAGCAGCACAGCACAGAACTGGGACGGCGAGGAGAGAGACGAGGCTGCTACATGCTGCAGCTGCTCGTTTACTAGTGAACATTCTCGCATTGATCCGCGAAGAGAGATTGGGGCTTTTCCCAACACATTCGAAGGAGGGATTTAATCATGTTTCGAACCTTAGTCGCGCTGCTGATGCGACTGGCAGCTGTGCAGATTGCTGTGCAGGGCGGAGGGGCCGTGGGGTCATTGCCATGGAGGCAGGGATCGTTGCCATGCACACGAGGCTTCTCCCAGGAGGAGTACAGTGTTGCCGTGGACGAGGAGCTAAGAGAGGGACAAGCACTCCTcaccgtgagGTTCGCCGACTGTGGCCTGGGCGACAGGGTTCTGTTGGAGGTGGTTGACGTGGAGGACTTCAGGCTGGATGAGGATGGCACGGTGTACGCCCGGCATGCCTTCCGTCTTGCCGACAGGAAGAGCACCTTGGTGGTGCGAGCGAGGGATCTGGAGACCAAGGAGGATTGGAAGACGCATGTTTACCTCCTCCTCCGGAACGACGGAAAGCCAGACACGACAGAACACAAACTCATCAAACAGGTGAACTCCAGCTCTGCAGCTGTGACTCAGCAGGTGCGAGAGATCGTGTTTCCATGGCACAGCTTGGTCGTTGGGGACGATGGATCTCTGAGGCGGGTGAAGAGGGACTGGGTCATTCCCCCCATCAACGTCCCTGAGAACTCACGAGGACAGTTCCCCGAGGAGCTAGTCAGGATCCGGTCGGACCGTGATAAGAACAGTCTCCTGCGTTACAGTGTGACTGGACCCGGTGCTGACCAGTCTCCGACCGGGATCTTTATCATCAACCCCATCTCTGGCCAGCTCTCTGTGACCAAACCCCTCGACCGGGAACACATCTCCAACTTCCATCTGCGAGCCCATGCTGTGGACCTGAATGGGAACCAGATAGAGAACCCCATAGACATCGTCATCAACGTCATAGACATGAATGACAACAGACCAGAGTTTACACACACCATCTACAACGGATCAGTACCAGAGGGATCCAAACCAGGGTCCTTTGTGATGACAGTTACGTCACTGGACAAGGATGACCCTAAAACAGCCAATGGGATGCTCCGATACAAGATTATATCTCAGAATCCTGAAAACCCCTCCTCCAACATGTTCACCATCAACAACAAGACAGGAGGAATCATCACTGTGGCTGCAGGGCTagacagagagAAAGTTCCTCAGTACACGTTAATCATCCAGGCTACTGACATGGAGGGGAACCCAACCTATGGCCTGTCTAACACAGCTACGGCTATCATCAGGATCACTGACGTCAATGATAACCCCCCAGAGTTCACCGCTGACAAATTCTATGGAGAGGTGCAGGAGAACCGTGTGAATGTGATCGTAGCTAATCTGACAGTAACAGATAAGGACCAGCCCCACAGTGCAGCCTGGAGTACTGTGTACAGGATCACAGCTGGAGACCCCACTGGACGCTTCTCCATCCCCACTGACCTCACCACCAATGAGGGACTGGTCACTGTGGTTAAGCCTATAGACTATGAGGTGAGTCGTTCCTTCGTGCTGACGGTACTGGCTGAGAACGAGGTTTCCCTGGCCCGTGGTATCCACCTGCCCCGTCAGTCCACCGCCACCGTGTCTGTACGCATCACAGACGTCAACGAGAGCCCAGAGTTCTCCCCCAACCCCAAAGTCATCAAACTAGAGGAGGGGCTACCGGGCGGCTCGCTACTCACCACCTTTACAGCACAGGACCCTGACAGATACATGCAACAGAACATACGGTACGCCAAGGTGTTCGACCCTGCTAATTGGCTGAAGATAGACCCTGTAAACGGGCGGATCTCCACCATCGCTGTGCTGGACAGAGAGTCTCCATATGTGAAGAATAACCTCTACAACATCACCTTCATGGCCACTGACAATGgcATCCCCCCAGCCAGTggtacaggtacattacagatgtACCTGTTAGACATAAATGACAATGCTCCTCGTGTCTTCCCTCCGGAGGTGGAGATGTGTGAGAAGCCTGAGCCCAACACCATCAACATCACCGCCAGTGACCCCGATCTGACCCCTAACGCCGGCCCCTTCGCCTTCGAACTGGCCAAGCGGCCGGCAGATGCACGCAGGAACTGGACCCTCACACGCCTCAATGGTGAATATGCTCAGATCAGGCTGCGGATAGGTTTTCTGGAGAGTGGTATCTACGAGGTTCCTATCATTATCACAGACTCAGGCAACCTGCCCATGTCCAATACATCCTACCTACAGGTCAAGGTGTGTCAGTGTGATCACCATGGAGACTGCGTGGACATGGAACGCATCATCGCAGCAGGGCTGGGCACTGGAGCCATCATCGCAATCCTCATCTGTATCATCATACTGCTAGTGATGGTGTTGTTCTTTGTGATGTGGATGAAGAGGAGGGATAAGGAACGTCAGGCCAAGCAGCTGCTCATCGACCCAGAGGACGATGTCAGAGACAACATACTGAAGTACGacgaagaaggaggaggagaggaggaccagGACTATGACCTGAGCCAGCTGCAGCAGCCCGACGCCTTGGAGACGGAAATGGTGAAGGTGGGGATCCGACGTATGGATGAGAGGCCCCTACACCAGGACCATATATACCCCCTCCGTTCTGCTGCACCCCACCCCGGAGATATAGGAGACTTCATCCACGAGGGTCTGAAGGCAGCTGATAATGACCCGACAGCGCCTCCCTACGACAGTCTTCTGGTGTTTGACTATGAGGGCAGTGGCTCCACCGCTGGCTCCCTCAGCTCccttcactcctcctcttccgGCGGAGACCAGGACTACGACTACCTCAGCGACTGGGGCCCGCGCTTCCGCAAGCTGGCAGACCTCTATGGTGGAGGGGACAACTAGGACTAGCCCCGTGCTGGGGGGAATTGGCAAGGGGTGGGTGGGATGGGGGAGGGAACATGAGTGGCACTTTTTTATCATGGGACAGGGAAGGAGTGCTGGTTGTAAAGAGACTTCTATTTTGGCTGACTTGAACAGAGGACAGAAACAAAGTGGAGTATGTTGGTGTGGCAAATGCTAGCCTAACCTGCTAGCATACAGGATAACTGAGCCTAGTGGATTGTCCCCCATATGCTTAGGATAGCTAAAACTCAGAGGAGAATATGGTGACTGCTTGCCTAGCCTGCTAGCATGCAGGCTAACTGAGGTTAGATTGGAGTTTTAGCCTACATGCTAAGGGTCGCTAACAGCTCGAGTACATTTCTGTGGCAACTGCTAGCCTAGCCAGTTAGCATACAGGTTAACTGAGGCTAGCGGAGTGTTAGCCCACACGCTCAGAGGAGAACATTGGAAGTAAACCGACCGTTGGTACTTTGACGGGTAGTTAATGGCGAATGAGAGAGTCTGGGTGGTCGCTCAGCAGTTAACGATGTTAAAGACGCTTAGTTACACTTGAATCTCACAGTACAGAAGCGCTGGGGTGAAAACGTGCCTTGTTGTACATTATTTTGATTCTGTTTTAGTTTTTTGTTCTTCATGACTTTCAAGGTCCTGACTCTAGCAGGGATTTTCGTCTGTAAGAGAGCGGATGTTTAAAATGAGGAACGCATGCTTCACCACGTGTGTTTGATGTGTGAAATAAAGTGTTGTTCAGGTTACACCTCACTGCCAGAGTGTGTAAGTCATCTTCGTTGCCATGGAGACACACAGGATGAACACTCCCCATTGCTGGATCGAGAGCATTGAGAGATGACATGTACAGTAAATGCTAAAATACTAGATAGTTTCcctgtttttctttgttttgttttaagCTTTTTTCACATTGTAAGTTTTTGCTAAGTAAAGTCACCAGTCCTACATTTTGTAGTAGACATATTGTTTAGTTACTCTGAGGTTTGGTCGGTGGAGACGACCAAAACCAGagtggggtcaattccatttcaattcagtcaattcaggaagtaaactgcaATTCCAATTCCAAATTTTTAACTGTAATtgtaatttcagtttacttcctgaattgattaAATTCAAAAGGAATTTACTCCAACTCTGACTAAACCAAGATGACAATGATGATGAAGGTGTTCATTCTGTCCGTTCATCTGCCTTAGTGTTCATCTGGTACTCTTCTCTGATTGGCTACTCACTGTAAACACAAATATGTAcagattgtattttatttttggttGTTGTTCTTTTTTGAGCGTGGTCTCTGAAAGTAATGCTACTATCCAGAACGTTGTATATGTATAATTTGGATTACAGattaaaaatgttttgcat

Function

NR:

description
cadherin-2-like

GO: NA

KEGG:

id description
K06736 CDH2, CDHN, CD325; cadherin 2, type 1, N-cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599575.2 True 4472 mRNA 0.51 16 33835382 33919803

Neighbor

gene id symbol gene type direction distance location
LOC110521743 LOC106584191 coding downstream 106994 33721919 ~ 33728388 (-)
LOC110521741 LOC106584188 coding downstream 124492 33686041 ~ 33710890 (-)
lrrc41 LOC106584186 coding downstream 186455 33641220 ~ 33648927 (-)
LOC110521732 LOC106584180 coding downstream 1344220 32488240 ~ 32491162 (-)
gs01 gs01 coding downstream 1581678 32249293 ~ 32253704 (-)
LOC110521745 LOC106584194 coding upstream 409559 34329362 ~ 34379734 (-)
LOC110521746 LOC106584195 coding upstream 478513 34398316 ~ 34483575 (-)
LOC110521753 LOC106584200 coding upstream 823131 34742934 ~ 34758146 (-)
LOC110521756 LOC106584201 coding upstream 1247084 35166887 ~ 35169270 (-)
LOC110521758 LOC106584076 coding upstream 1278007 35197810 ~ 35205192 (-)
G2226747 NA non-coding downstream 22706 33812474 ~ 33812676 (-)
G2226743 NA non-coding downstream 27195 33807975 ~ 33808187 (-)
G2226740 NA non-coding downstream 35755 33799399 ~ 33799627 (-)
G2226644 NA non-coding downstream 45723 33789407 ~ 33789659 (-)
G2226606 NA non-coding downstream 74732 33760424 ~ 33760650 (-)
G2226832 NA non-coding upstream 10375 33930178 ~ 33930413 (-)
G2226850 NA non-coding upstream 21499 33941302 ~ 33941515 (-)
G2226857 NA non-coding upstream 26539 33946342 ~ 33946545 (-)
G2226859 NA non-coding upstream 27887 33947690 ~ 33947974 (-)
G2226896 NA non-coding upstream 29998 33949801 ~ 33950103 (-)
G2226745 NA other downstream 25488 33809379 ~ 33809894 (-)
G2226519 NA other downstream 205488 33629122 ~ 33629894 (-)
G2224948 NA other downstream 1413335 32421732 ~ 32422047 (-)
G2223487 NA other downstream 2560239 31274720 ~ 31275143 (-)
G2227478 NA other upstream 391339 34311142 ~ 34323655 (-)
G2227801 NA other upstream 622414 34542217 ~ 34542619 (-)
G2229175 NA other upstream 1879001 35798804 ~ 35799357 (-)
G2229647 NA other upstream 2293343 36213146 ~ 36214385 (-)
LOC110521777 LOC106584061 other upstream 2600549 36520352 ~ 36541228 (-)

Expression


Co-expression Network