G2213395 (elavl4)


Basic Information

Item Value
gene id G2213395
gene name elavl4
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 22689204 ~ 22745824 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2531979
TCTTCAACACCTCATTTTATTGTCCCAACATTCAAAAGTACAAATAATTCAAACACAACAGTtttatgagaaaaaaaaaaacatttacagcaagatttttattttgtttccagtttcagaaatTACCTAAACTAGCAAGGATAACATGAAGTCATTCATCGCAGTAATTGGATTAAGAATACTAAGaataacagcaataataataataataacaataatcaataATCGATAAGTGATAGCATAAGTAAGAGGGACCAGTAAGGCCCTGTGaacttttttcttattttttgtcTTTAAAGATAGTTAATAGATTTTCAGATAGTAAACAAACACATTTTAGgagaaaataaaaaatgacaagAGCCTTGTTCCTCTCTTTACCTTCCCTCCTACACTACTGGCTGTTGATTTCCTATTGGCAGGCTGCCACTATAAGGCGCTACAGGGGATGGTGTGAGCCATAGGGGTTGGACATAGACCGAGGTGACACAGCCCCATGTTTCAAACAcccttacaaacacacacacacacacacacacacacacacacacactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaag
>TU2531980
TCTTCAACACCTCATTTTATTGTCCCAACATTCAAAAGTACAAATAATTCAAACACAACAGTtttatgagaaaaaaaaaaacatttacagcaagatttttattttgtttccagtttcagaaatTACCTAAACTAGCAAGGATAACATGAAGTCATTCATCGCAGTAATTGGATTAAGAATACTAAGaataacagcaataataataataataacaataatcaataATCGATAAGTGATAGCATAAGTAAGAGGGACCAGTAAGGCCCTGTGaacttttttcttattttttgtcTTTAAAGATAGTTAATAGATTTTCAGATAGTAAACAAACACATTTTAGgagaaaataaaaaatgacaagAGCCTTGTTCCTCTCTTTACCTTCCCTCCTACACTACTGGCTGTTGATTTCCTATTGGCAGGCTGCCACTATAAGGCGCTACAGGGGATGGTGTGAGCCATAGGGGTTGGACATAGACCGAGGTGACACAGCCCCATGTTTCAAACAcccttacaaacacacacacacacacacacacacacacacacacactcacacacacacacacacacacacacacacacacacacacacacacacgcacgcacacacgcacacacacacacacacacacacacaag
>TU2531981
TCTTCAACACCTCATTTTATTGTCCCAACATTCAAAAGTACAAATAATTCAAACACAACAGTtttatgagaaaaaaaaaaacatttacagcaagatttttattttgtttccagtttcagaaatTACCTAAACTAGCAAGGATAACATGAAGTCATTCATCGCAGTAATTGGATTAAGAATACTAAGaataacagcaataataataataataacaataatcaataATCGATAAGTGATAGCATAAGTAAGAGGGACCAGTAAGGCCCTGTGaacttttttcttattttttgtcTTTAAAGATAGTTAATAGATTTTCAGATAGTAAACAAACACATTTTAGgagaaaataaaaaatgacaagAGCCTTGTTCCTCTCTTTACCTTCCCTCCTACACTACTGGCTGTTGATTTCCTATTGGCAGGCTGCCACTATAAGGCGCTACAGGGGATGGTGTGAGCCATAGGGGTTGGACATAGACCGAGGTGACACAGCCCCATGTTTCAAACAcccttacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacgttttcacaaacacactcacacgcatGAACACAGACGCACAAGAGGGTCTAGACAGAACACAGGCACACATCATAAGAGTTTAAAAGACATAGGAAATATGTTCACACATCAGAACGACATTCTACTGGGGTTGTTGCATAATTCAAGCTCCCAACAGCTCTGGAGCATGAAAAGGGGTCCGTTGGTGTTCTGAGGTCAGAACCGTATAGTGGTTGGATGATGTCAGATGGGCTGCCTAAGACGTGGTTATGAGAGAGTATGTATATGCATGTCAAAGTGTTTATAATGTCCCTACACCTCATGTTTTCTGGTTCAACAAAATCCAATTCAGTACTTCTGGAACCATTCCCGACCTTTACCtttcaaaatatatataatattatagtatATAAAATATAGAATGGGTACAATCCATGAAATACCTTCAGTCTTTTTAAATTGCAACAACTGCCATAAGTACAGTTAGTGTGCAATGTTCAAGATCTCTTTAAAGAGATGTTCTTATGTAACTTTCAAACATGATGATTCTCTAAAAATAAGTTTGACTCTTAGGTGAATTGACTGATTACTCAAGTGCAATGAATGACCCTCAAATAAAATGGACATTTATTTGCTCATCAAATTCATGTGCCCGAGTTTCCAAAATTGGATGTTATAAAATGTTTGAAAACTGAAAACTATACTTCAGACCCACATTTTTGCATAAAGTTTCATCACAAAGCGGTAGTGTGGAGGGAGGGTGCGGAGTGGCTTTAAAACGACACAAACTGATCACAGGTTATATTGAACCAGAACAACTGTTATAACATTCTATTAAGACTAAACTGTATTGAAAAAGATTtaaagattttgtttaacaagacAAGAAAAAAGCAATAGCAAATTTAACTATCAACTAGGTTATGCATAGCGAGTAACTGTTTCTAGTAATAAGGGAAGAGCGTCACCAACCCTCTTGACATTTTTTTTAGTTTTCAACTTTTGGATTTTTTATATTGTAATTTTGATATATCGGTACAAAGCACAAACGTACTAAAAGTTCTCAGTGCAGTGGACTAACGGAAGAGCCTCTCCCCTAGTCGCTTGGTTCCCTTTTGCTCAGAAACGTCCTCCCTCCCTGTACCAGAATCACGTAAATACACAGACCGAACaaataaataccaaaataaataaatcattaatagaaataaataaatagttgAAGCAATGAAACAATCAATAAATAATTAATAAATACGTTATTTTATAAGCTTTTGTTAAATTTATTTTGCCGCGGTAGTTAACAAAAATGTAATCCAAAACGTTTTTTTTCCCCACAAGCGACATGACAACATATTAAACAGGATTCCTCACGAGTTTTCTAAATAACTGAACCATCACTTCATAAAGTTGTCATATGAAAAAGACAAGCTAAAACAAAAAACAGTGACAACtcatatagatatagatattgtaaaacaaatgtagacTATATATTATCTATTTGTACACAACAAATAAAGACACCGTTGTAATAGATCCTTTGAGGAAACAAATATCTAGACTAACATAACTAGCTAATTATTATAGAATTTTGACAATGCTTCACACTCAGCAAGTAACCTAAAAGTCAGCAAGCCAAAGAAAACTGTTTTAGGTGATTCTTACATGGCCCAAAGTCCGTCATCTGGTTTTTCAGCAAGGAATAATCTAACCAGATGGGGgccaacaataaaaataaaaagaacaGCAGCTCAATTCAATGTCAGCATCAAAGTATTTTTTTCCTCTAAACAACACATAGAACAACAAACTTGGATATTTAAGATACGTAAATCATGTAATATAGCACCTACTGTTGATCGCTAAAGGACGTTCTTTTCAAATTCCACAAAATGATAGCAAAGAAATCAATAGATAATGTAGGTTTTCTAAATGGATAGATGTGTATATAGTCATTACTGATATCCCATAGACTGACAAAAATAAAACAAGTGGACAATGCTTCTTGCTTTGGGCTCCGGACTGTGAGGATGGTTAGGCCTTGAAAGACCTCTTTCCCTTCCCTTTTGGGTATCGCTGTTGAATAATTACGCACTATGAAAAATTACGAAGATCACCTGCCTCAATTTGCATCCCTTGACAAAACCTTCCATCTACAAAATCATCGCCAATCAATTTCTCCTAAAAACAAACAACCTTTGATCCTAAAAAGTACCACTGCAGAACGAACAAGACAAGGTGGCGCACatccctccccccaccctctAATTAGCCAGTCAaaatatttttctattttttcaAATCCAGATTCTTGTAAAAATTCTTCAATAATTCTTATTTTAATTATCATATtataaaaatagattttcttctctttattttttatttttctaaatGCATTTTCAAGCAAAGAGATTTTCTCTTTGGCAATTGTGTTTTTTAAATCACTTAACGTGTCACCAGGAAAGCTaacccatcccctccctctcccaaTCTCCCAAACCCCAGTGAGGAAAGACATGTTTTGTTTGcaatacaaaacattttttttaaatcatttttttctgCATCAGAGAAAACAGGATTGTGTAATCCCTTAGAATTTATAGGGGTTTTTAATATACACAAAAAATGAATGAATGGTCACCAATTTAAAAAAGAGccccctcccttcttctgtcAGGGAGGCATAATTCTAACGACAGTGGATCCGgatttaaaaaagaaagaaatccTGAATCAAGAACAAGAAAGTTCAATCTAAAAAGGATATTCTCTTCTTTGAAATAAGGGGACTGGTTTTGCTACTGTTTACATAGAAGAGAAAATCATTTAACAATCACAAGAACAGAAAGGATATACAACAGGAATCCTGTATTATCACAGGGATTCCCAAATTATGGATATTTTTATCTTTCATTTTGTAATACTTAGGCAACATTGGCTTATAGGTCCAAAGCTATATTATAAGCCGTTTCTAgttcttttttgtttgtttgtttgctgtgTTCCTGTTGGAGAGTTGCTGTGTTGGGCGACTATAAGGGTGATGGTGGTGACAGGGGATTTGgagtgaggaggggttcaggacTTGTGGGTCTTGTTGGTCTTGAATGAGACTTGCAAGACGCGGTCGCCCAACCGGTACCCATTGAGACTGGCGATGGCCATAGCCGCCTCGTCGTAGTTCGTCATGGTGACGAAGCCGAAGCCCTTGCATTTGTTGGTGTTGAAGTCGCGGATGACCTTGACGTTGTTGACCGCTCCGAAGGGCCCGAACAGCTGCCACAGGACGCTCTCGTCAGAATCTGGAGACAGGTTGTAGACAAAGATGCACCAGCCAGTGCCTGTGTGGCCAGGGATGTTCATGCCCACCAGGCTAGTCATGCTGTCAATGGTGATAGGAGAAAACCTGCACCAcaagatagacagggagagagataggtagggAGATAAAGAGCACAATGTTAAGTGAAACAAATGTCAAATTGAGAGAAATAGGA

Function

symbol description
elavl4 Predicted to enable RNA binding activity. Acts upstream of or within axonogenesis. Part of protein-containing complex. Is expressed in nervous system and trigeminal placode. Orthologous to human ELAVL4 (ELAV like RNA binding protein 4).

NR:

description
PREDICTED: ELAV-like protein 4, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2531979 False 622 lncRNA 0.37 3 22689204 22745824
TU2531980 False 642 lncRNA 0.38 2 22689204 22745824
TU2531981 True 4065 lncRNA 0.37 2 22741718 22745824

Neighbor

gene id symbol gene type direction distance location
LOC110522763 LOC100286605 coding downstream 34229 22180097 ~ 22654975 (-)
LOC110521557 LOC106584333 coding downstream 379368 22295614 ~ 22321717 (-)
LOC110521551 LOC106584337 coding downstream 581817 22010343 ~ 22107387 (-)
LOC110521548 LOC106584340 coding downstream 888387 21666793 ~ 21800817 (-)
LOC110521545 NA coding downstream 1328325 21352715 ~ 21360879 (-)
LOC110521561 LOC106584330 coding upstream 117551 22863375 ~ 22868980 (-)
LOC110521562 LOC106584329 coding upstream 129480 22875304 ~ 22963761 (-)
LOC110521564 LOC106584326 coding upstream 236693 22982517 ~ 23008109 (-)
LOC110521565 LOC106584325 coding upstream 256003 23001827 ~ 23025456 (-)
LOC110521566 LOC106584324 coding upstream 282794 23028618 ~ 23062275 (-)
G2213051 NA non-coding downstream 469131 22155089 ~ 22220073 (-)
G2213083 NA non-coding downstream 498066 22190439 ~ 22191138 (-)
G2213028 NA non-coding downstream 562740 22126152 ~ 22126464 (-)
G2212963 LOC106584336 non-coding downstream 564063 22121814 ~ 22125141 (-)
G2213430 NA non-coding upstream 2165 22747989 ~ 22776939 (-)
G2213537 NA non-coding upstream 177428 22923252 ~ 23014524 (-)
G2213589 NA non-coding upstream 280312 23026136 ~ 23026365 (-)
G2212908 LOC106613883 other downstream 778468 21907963 ~ 21910736 (-)
G2212755 NA other downstream 1022589 21665964 ~ 21666615 (-)
G2211274 ttc14 other downstream 1382662 21304841 ~ 21306542 (-)
G2210769 NA other downstream 2166093 20518340 ~ 20523111 (-)
LOC110521508 LOC106584371 other downstream 2553989 20129636 ~ 20197258 (-)
G2213654 NA other upstream 432682 23178506 ~ 23179611 (-)
G2213647 NA other upstream 451823 23197647 ~ 23199406 (-)
G2217605 NA other upstream 3171530 25917354 ~ 25920245 (-)
G2217805 prrc2c other upstream 3490861 26236685 ~ 26237398 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G158493 NA unknown CI01000030 null 2279113 ~ 2279192 (+)
eurasian perch (Perca fluviatilis) G97485 elavl4,LOC107657884 non-coding NC_053120.1 CM020917.1 22865827 ~ 22870448 (+)
mexican tetra (Astyanax mexicanus) G97637 NA non-coding NC_035907.1 CM008310.1 6141717 ~ 6143882 (+)