XLOC_004172 (cass4)


Basic Information

Item Value
gene id XLOC_004172
gene name cass4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27745618 ~ 27778831 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007975
CTGTCTGCGCTCTCCGTTTATTTGtccaatatgtgtgtgtgtatgagtgtgtctgtgtgagagacTGAGAAGAACGTGCAACATACTTTTAACAGACATTAAAACTACAAACAGATTTAGATGCTAACCGTCAAGCCAACATGGACTTTTGAATGGGATTTATAAACTGCTTGAACTCAGAAAGATGGAGACGCTGTTTGCCAGAGCCCTCTATGCCAACACGGCTGAAACCGAAGATGAGCTGGCGTTCTGCAAGGGTGAAATCATTTTGGTGCTGGAGAAGAACGTTGTGGGAAGCACCGGCTGGTGGAAGTGTGCTCTCCGGGGGCGTCAGGGCCTGGCACCCGCTAACCGCCTGGCACCTCTGTCACCGGCCGAGGCTGAACAAATAGCTGCAGAGAGAGACTGTTCGACCAATCACAGCCATCAGAGCATCTATCAAACACCAATAGCTTTATCAAAGTCCCCTGAGTTGCCCATTTATGAAGATATGAAGACTATTTATAAAGTGCCTCCACAAGGCGTCTGTTCACCAAACAAACAAGAAGATCCTGAAGGAACCAGGCCTTTACATGATgGCTTATCTGCTCATCCCAAAACTGGTGCAGATATATATGATGTCCCAAACCTGCTGAGAAAATCCTGCTTGTTCACAGCATCTCCTCTGCACCCTTCGGAAACATCACTGATGTCAAGCGCTGAATTTCACAGCAGAAATGAGGCGACAAATATGCTGCAAATGCTACAAAATGTGAGATGTGAGACTGCAACTAATCACAAGGCTACCACCTTACCTCCATTTGGTACCCAAGACCCTAATTATGACTTCCCAGTACCCTCCATCACTGAGGATTCTAAAAAGCCTCGGTGTGGTTATAGTACCATGCCAAATCCCTGTAAGTCGGAATGGATCTATGACGTGCCTGTCTTTCCACAAAAACAGGGATGTGAACCTGGTTACTGTGACACCCTGCCACCAAAAGATATTGACTCAACCACAGCTCTTTATGACATTTTGCCGGCACGCATTTGGCCTGAAAAGAAGCACTGTCCCATCCAGCCCCTATATGACGTCCCTAAACCAAGCATTTCATTAACACAGTCTTGCACAGTCAATGAGTATTCACCAATTTCATCCATTTACGATGTCCCACCTTGCTTTAGACAAACCAAAACTACTGCAGAGCAACCCAGAAAGCAAAGCCCTCCCGAGATGGACTCTAAAAATGGCCAAGAACCACTCGAGTACAGGGGTAAACCAGGACCGTTGTACGACCAACTTCATCGATGGCCATCAAGAGGCAGGACACCCTTCAGACAGCCTTTAGAAGGTACAGTTAGGAGGGACAACGAGGGTACCAGAGACCACCAAAGGAGTTCAACGGTGTCCACTTCCTCCACAGCTTCCAGCTCTTCCAGGAGTTCCTGTGACTCTTTCATGCTAAGTTCTCCCGAACCCGAACCCTTGCGTGAGATCACCCTTTCCCAGGAGGAAGCTGGAAACAAGTTGCTTGAGTTAAAGGAAGCGGTTTGCCAGTCAGTGCCCAAACTTATGCTGTTCGTCAGCAGCCAGTGGAGGAGCAGAGAGCACCTGGGTCAGCACCTCGATCAGATCCGCACCGCATCCGAGGACGTGACTGACTCCATTGACTCCTTCTTGAACTTCACTTTGGATGTCCGAGGAAATGCACAACGGCTGACAGACTCGAACCTACAGACTCGGCTCCTCAAGCAGCTCTCCATTGTTGAGGACTCGGGGCTGATTCTTCAACAGGCTGCGAGTGCTCTTCGAGATCAGGGTTGGCATCTGGAGGTTTTAGCTCAGGATGCTGGCCATTCACAGATGCCTGATCACCTGGAACGCTTTGTTATGGTGGCTCGAACCGTGCCGGAGGATGTGAAGAGGCTGGTGTCCATGCTGAACGCGAACGGAAAGCTTCTTTTCAGAGTGCAGGTGAAAGAGCTGGAGGTGATGGAGAATGAGGGATCGTCCGAAGGGACAAACCACAAAAAATGTGAACCAATGGTTGACTCGGGGATAGACGAGAGTGACTATGTGCAACTTCAGACAACAGCAGAGATTGAGCAGGAACCAAAACCAACCAAGAGCAGCATTAAATCAAAGAGAAACAGTGATTCCTTGAAAAAACAGgtTTCCAAACCACAGTCCGGCAGCCCTTGCAATCCAATCCAAACCTCAAGGAAATGTCCAATCTCTGACCACTGCCGGCTGTACTTCGGAGCCATTCAGAAAGCCATCAGCGTGTTCATAAGCAGTCTGAATGAGAACAAGCCTCCGGAACAGTTCATCTCCCACAGCAAGCTGGTTATCATGGTCGGCCAAAGACTCGTCAACACTCTCTGCAGTGAAGCTAAAAGTCGAGAAGCCGGTGAGGAGATGCTGGCCATGAGCAATCAGCTGTGTGCCCAGCTCAAGCAACTAGCCTTGGTGACCAAGAAGGCGGCTTTGAACTTCCCTGACAAACTGGCAGTCCAGGAGGCACATGACATTGCCAAAGAGCTGGCGCAAAGGGCACAACACTTCAGAACGTCACTGGATGTCTGATGTCCCATCTGTTTGCCCAGTTTATTGACTGGAGGTGGGTTAGTGAAGATAGCATGGTGTTTTATCTGTGGATTGGAGGAATTTGTATGCAAGTCTGAATCAGCCATGTTTAAACTGAACCCCTTTTTTTAAAGGTAATCTGGATGTTGAAGGTAACAAAGGGACCACTTACAGTCatagccttaaagggatagttcaccccaaaacaaaAATGTCCTCATcaattactcacactcaagtggaaTTAAttcatttcttctgttaaacacaagcaAGATATAGCCATTagcttttttatctatttatatgcACAGTTAATATTGCGTTAAAAATGCATAATGAAAATGCCAATATgcgtatatattttaaaactgtgAATAAAAAACAACAGATGCTTATTGGATAAgctttttaaaggtgctgtatgcaagtttgacacctagtggttgaactgGGTATTA

Function

symbol description
cass4 Predicted to act upstream of or within cell adhesion. Predicted to be located in cytoplasm. Orthologous to human CASS4 (Cas scaffold protein family member 4).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-110131-9 Predicted to act upstream of or within cell adhesion. Predicted to be located in cytoplasm. Orthologous to human CASS4 (Cas scaffold protein family member 4).

Ensembl:

ensembl_id ENSDARG00000006775

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007975 True 3027 mRNA 0.47 7 27745618 27778831

Neighbor

gene id symbol gene type direction distance location
XLOC_004171 fam120a coding downstream 6569 27705030 ~ 27739049 (-)
XLOC_004170 phf2 coding downstream 42783 27644524 ~ 27702835 (-)
XLOC_004169 NA coding downstream 120153 27543578 ~ 27625465 (-)
XLOC_004168 ptpdc1a coding downstream 207957 27511277 ~ 27537661 (-)
XLOC_004167 NA coding downstream 237645 27502205 ~ 27507973 (-)
XLOC_004173 BX601648.1 coding upstream 4927 27783758 ~ 27806767 (-)
XLOC_004174 NA coding upstream 22028 27800859 ~ 27809715 (-)
XLOC_004175 cstf1 coding upstream 38470 27817301 ~ 27827533 (-)
XLOC_004176 eif4g3a coding upstream 49381 27828212 ~ 27917730 (-)
XLOC_004177 ece1 coding upstream 140871 27919702 ~ 28050559 (-)
XLOC_004063 CR854846.1 misc downstream 11617940 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 15053927 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 15123851 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 15154322 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 15232356 12512966 ~ 12513262 (-)
XLOC_004165 CR847934.1 non-coding downstream 997189 26748292 ~ 26748429 (-)
XLOC_004152 CR933820.1 non-coding downstream 2075663 25669839 ~ 25669955 (-)
XLOC_004150 NA non-coding downstream 2268638 25475305 ~ 25476980 (-)
XLOC_004180 NA non-coding upstream 418126 28196957 ~ 28200504 (-)
XLOC_004181 NA non-coding upstream 640045 28418876 ~ 28424141 (-)
XLOC_004182 NA non-coding upstream 734911 28513742 ~ 28522344 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_04361825_04366757 NA coding CI01000306 null 4361544 ~ 4366757 (-)