nudcd1 (nudc1)


Basic Information

Item Value
gene id nudcd1
gene name nudc1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 41644320 ~ 41675688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970846.1
CCGTCCGTAAAATATTCCGACTGATTCATACAGGAAGCACATTAAGTTGCGTTCAGTTCAGCTCCTATATATTTCATCTGAAACATATTGTCAATTTATCAATAATTCTGAAACATGGCTGTATCGAATTATTCATTGAAGGTCAACAGACAGCTTTTGGATCCCAGCTTTGAGAGTTACAGACTGTCTCTGGAGCCCATACCAATTTACAACGTAGAGCTAGATGCTGCTGTGGCGGAGGTGAAACTGAAGGACAGTCAATACACCCTGGACCATGTGCGTGCTTTTGGCATGTACAACTACCTGCATATAGACCCCTGGTATGAGAACAGTGTTTTCTTTGTTGACTGCAAAGGGCGAGTGCTGAATCTTACGGTTACCCTGGACACGGCACTGGGGAAGCCCATAGAGGTCTTCCACATGCCCTCTGACCCCACTGTGTGTGAGGAACGTCTCTGTGCCTCTCTTAGCTTCACCTCTGCCACCTGGGCATCTCTCTCTGACGGTGCGGGCAGACTCTACCTCCTCAGAACCAGCATGAGAAGGGAGAATTGCAGTCTGAAGTGGGAGCCCTTGTTCAGTGAGGAGATAGGGGAGCCCTTCACCATCCTCCACAGCATATCTCACGTCCAGGCTGGGGTCCACTCCATGGAGGTCCTGCTCCTCCGCATCCAGAAAGACCCATCATCGGACTCTCATGCAAAGGGAAGTGGCTACTCTGTTTCTTTGGAATGGATCACAGTCTCTAACACTGCAGAACAGGGTCAGGAGAAGAAGTACAAGGTAAGGAAGATGAAGATGCTGAGGGGGAAGTCAGTGCCCCACTATGCAGCATTGGAGCCCCAAGGGAAAGGGCTAATGGTGGCTTCGGAGAAACCTTTTGTTTTCACACATGTGGACGGGGCGCTGCTGGAGCAGCCTGCGGCACAGGCCATGGAGATGGAGTCGAGCGCTGATCCAATCTACTTCTGGCAGCAGACAATAGAGGATGTAACAGTATCTGTGCGTATGCCCGAGGGCATCACCAAAGACGACGTGGTCTTCAAGCTCTACATGGAAAATGTGAGTGTGGGGGTGCAGGGTTTTGCCCCCTTGCTGGAGGGGCAGCTGCATGCCCCTGTGGACCCCGAAGCCAGTGCTTGGATCATCAAAGATGAGAAAAGccTGGAGGTGACTCTCCAGAAGAGGAGCGAGGGGCCCATGTGGCCAGAGCTGCTGACTGgaggagacgggagaggagagtTCCTGATGAGTGAGGAGCAGACAGCCTTGCTCCACGAGAGACTGACATACCTCACTACTGAGGACATGAATGCCAACCCAGACAAGGGCAAGCCCCCGTGCAACGCCCAGGAGCTGGAGGACTGCGATGGCTTCCCAGAAGACAGCTCCAACCTGACACGCTTCGATGGAGAGTCGCTCAAGCCCACTCACGTGGTGAACTTGGGGAGCCATCAGTACCTGTTCACGGTGGACTTGAACCCATCTGAGATGCCTAGTTTCTGCCTGCGTCATGACGTGGATGCCCTGCTGTGGCAGCCCCGCCCGGACCAGCCCAGCAACATGTGGGAACACATCGCCACCTTCAACGCCCTCGGCTACGTCCAGGCGTCGAAACGTGACAAGAAATTTGCCACCTGCCCCCCAAACTTCTCCTATGCCGCTTTGGGGGAGTGTCTTCGCCGGGTGTTCATCTACCGGCAGCCGTCGCCGGTGGACACAGTCCTGTTCAACAGGATGCAGGGTCGTCAGGTGGGCCAGGTCGCTAAGCAACAGGTGGCCAGCCTGGAGTCAAACAACATTGTCCTTGGCTTCAGAGCCACCAATGAGAGACTGTTCGTCCTGACCTCTAACAACCTATTTGTTCTGAAGATCAACAATTAGATCTGGGACTACTTTTATGGCCAGTTTTACGGACACATCCGGGATGGAGAATCCCCATTGAGATAgcattttagtccaggactaagcttaatctgtgtctgggaatttGCCCCTTAGAATGTTTCCATCCACCATACACACTGTCCACCCCTGAGACAGAGCTATACCATTCCACAAAGTAAAAGGAGTGTATCTAGAACCTATAGTAAGTGTGGTAGTGTAATGTCATTTGTGGTAGGGGTCTGATCTGTCAGCAATATGTCTACACTTTCAAATGTCTGTCTTCATATTTGTAAGTTATTCTATGAATATCCTACTGGTGTTGACACTGTATAGGAGCCCAAATGTAGTATGATTCATGTTCTCACATTAACTTATGCCCTCAGAAGCTTTGACCAATAGAAGCAGAATGTAATGAAAATATTCCATTAAAACCAAACAACGTTAT
>XM_036970845.1
TCCGTCCGTAAAATATTCCGACTGATTCATACAGGAAGCACATTAAGTTGCGTTCAGTTCAGCTCCTATATATTTCATCTGAAACATATTGTCAATTTATCAATAATTCTGAAACATGGCTGTATCGAATTATTCATTGAAGGTCAACAGACAGCTTTTGGATCCCAGCTTTGAGAGTTACAGACTGTCTCTGGAGCCCATACCAATTTACAACGTAGAGCTAGATGCTGCTGTGGCGGAGGTGAAACTGAAGGACAGTCAATACACCCTGGACCATGTGCGTGCTTTTGGCATGTACAACTACCTGCATATAGACCCCTGGTATGAGAACAGTGTTTTCTTTGTTGACTGCAAAGGGCGAGTGCTGAATCTTACGGTTACCCTGGACACGGCACTGGGGAAGCCCATAGAGGTCTTCCACATGCCCTCTGACCCCACTGTGTGTGAGGAACGTCTCTGTGCCTCTCTTAGCTTCACCTCTGCCACCTGGGCATCTCTCTCTGACGGTGCGGGCAGACTCTACCTCCTCAGAACCAGCATGAGAAGGGAGAATTGCAGTCTGAAGTGGGAGCCCTTGTTCAGTGAGGAGATAGGGGAGCCCTTCACCATCCTCCACAGCATATCTCACGTCCAGGCTGGGGTCCACTCCATGGAGGTCCTGCTCCTCCGCATCCAGAAAGACCCATCATCGGACTCTCATGCAAAGGGAAGTGGCTACTCTGTTTCTTTGGAATGGATCACAGTCTCTAACACTGCAGAACAGGGTCAGGAGAAGAAGTACAAGGTAAGGAAGATGAAGATGCTGAGGGGGAAGTCAGTGCCCCACTATGCAGCATTGGAGCCCCAAGGGAAAGGGCTAATGGTGGCTTCGGAGAAACCTTTTGTTTTCACACATGTGGACGGGGCGCTGCTGGAGCAGCCTGCGGCACAGGCCATGGAGATGGAGTCGAGCGCTGGTGGGTCAATGCTACAGGTCATAGATCCAATCTACTTCTGGCAGCAGACAATAGAGGATGTAACAGTATCTGTGCGTATGCCCGAGGGCATCACCAAAGACGACGTGGTCTTCAAGCTCTACATGGAAAATGTGAGTGTGGGGGTGCAGGGTTTTGCCCCCTTGCTGGAGGGGCAGCTGCATGCCCCTGTGGACCCCGAAGCCAGTGCTTGGATCATCAAAGATGAGAAAAGccTGGAGGTGACTCTCCAGAAGAGGAGCGAGGGGCCCATGTGGCCAGAGCTGCTGACTGgaggagacgggagaggagagtTCCTGATGAGTGAGGAGCAGACAGCCTTGCTCCACGAGAGACTGACATACCTCACTACTGAGGACATGAATGCCAACCCAGACAAGGGCAAGCCCCCGTGCAACGCCCAGGAGCTGGAGGACTGCGATGGCTTCCCAGAAGACAGCTCCAACCTGACACGCTTCGATGGAGAGTCGCTCAAGCCCACTCACGTGGTGAACTTGGGGAGCCATCAGTACCTGTTCACGGTGGACTTGAACCCATCTGAGATGCCTAGTTTCTGCCTGCGTCATGACGTGGATGCCCTGCTGTGGCAGCCCCGCCCGGACCAGCCCAGCAACATGTGGGAACACATCGCCACCTTCAACGCCCTCGGCTACGTCCAGGCGTCGAAACGTGACAAGAAATTTGCCACCTGCCCCCCAAACTTCTCCTATGCCGCTTTGGGGGAGTGTCTTCGCCGGGTGTTCATCTACCGGCAGCCGTCGCCGGTGGACACAGTCCTGTTCAACAGGATGCAGGGTCGTCAGGTGGGCCAGGTCGCTAAGCAACAGGTGGCCAGCCTGGAGTCAAACAACATTGTCCTTGGCTTCAGAGCCACCAATGAGAGACTGTTCGTCCTGACCTCTAACAACCTATTTGTTCTGAAGATCAACAATTAGATCTGGGACTACTTTTATGGCCAGTTTTACGGACACATCCGGGATGGAGAATCCCCATTGAGATAgcattttagtccaggactaagcttaatctgtgtctgggaatttGCCCCTTAGAATGTTTCCATCCACCATACACACTGTCCACCCCTGAGACAGAGCTATACCATTCCACAAAGTAAAAGGAGTGTATCTAGAACCTATAGTAAGTGTGGTAGTGTAATGTCATTTGTGGTAGGGGTCTGATCTGTCAGCAATATGTCTACACTTTCAAATGTCTGTCTTCATATTTGTAAGTTATTCTATGAATATCCTACTGGTGTTGACACTGTATAGGAGCCCAAATGTAGTATGATTCATGTTCTCACATTAACTTATGCCCTCAGAAGCTTTGACCAATAGAAGCAGAATGTAATGAAAATATTCCATTAAAACCAAACAACGTTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970846.1 False 2332 mRNA 0.51 10 41644320 41675687
XM_036970845.1 True 2356 mRNA 0.51 10 41644321 41675688

Neighbor

gene id symbol gene type direction distance location
LOC110487689 plec coding downstream 34940 41469563 ~ 41609380 (-)
eppk1 LOC106598963 coding downstream 199187 41418547 ~ 41445133 (-)
LOC110488433 LOC106569773 coding downstream 506764 41126017 ~ 41137556 (-)
usf2 LOC106569770 coding downstream 595663 41019276 ~ 41048657 (-)
lipea lipe2 coding downstream 880590 40741805 ~ 40763730 (-)
LOC110529149 LOC103393926 coding upstream 70600 41746288 ~ 41747390 (-)
G2329876 NA non-coding downstream 65508 41578378 ~ 41578812 (-)
G2329742 NA non-coding downstream 159249 41484866 ~ 41485071 (-)
G2329608 NA non-coding downstream 312783 41331122 ~ 41331537 (-)
G2329566 NA non-coding downstream 316076 41327942 ~ 41328244 (-)
G2329557 NA non-coding downstream 325807 41318305 ~ 41318513 (-)
G2329969 NA non-coding upstream 68194 41743882 ~ 41744305 (-)
G2329984 NA non-coding upstream 72480 41748168 ~ 41748431 (-)
G2329997 NA non-coding upstream 82899 41758587 ~ 41764759 (-)
G2329998 NA non-coding upstream 89314 41765002 ~ 41765349 (-)
G2330000 NA non-coding upstream 94200 41769888 ~ 41770104 (-)
G2329495 NA other downstream 386980 41253995 ~ 41257340 (-)
G2328836 NA other downstream 994898 40648804 ~ 40649422 (-)
G2328315 LOC106570114 other downstream 1435589 40208053 ~ 40208731 (-)
G2329999 NA other upstream 93080 41768768 ~ 41769560 (-)

Expression


Co-expression Network