LOC110529149 (LOC103393926)


Basic Information

Item Value
gene id LOC110529149
gene name LOC103393926
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 41746288 ~ 41747390 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041294.1
ttactgttgctcatCCAAAGAAAGGTAGCTTGCTAGCTTAACCGCCTTGTTTACAATTAATCAATCGCTGTAACGAGTTTGCGGTGTGTCTTTGGAAATGTACAGAGTTCTCCTTCTTCATCCCATTTCAGGGAAAAGAACATGAGCAAAGATTCACAAATGAGGGCAGCAATAAATCAGAAATGAATTGAAATGGGGGAACGGGATCGGTTGAAAGAACTGCTCAGGGCGAAGCTGGTAGAATGTGGGTGGAAGGATCAGTTGAAAGCACACTGCAAAGGTGTTATCAGAGAAAAGGGCTTGGAACACATAACAGTGGAGGACCTGGTAGCAGAAATCACACCAAAAGGAAGAGCACTTGTACCAGATAGTGTGAAGAAGGAAcgattatcaaatcaaatcaaatcaaatcaaattttatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacaagtaatctaactaacaattccaaaactactgtcttgtacacagtgtgaggggataaagaatatgtacataaggatatatgaatgagtgatgg

Function

NR:

description
LOW QUALITY PROTEIN: transcription and mRNA export factor ENY2-like

GO:

id name namespace
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0006406 mRNA export from nucleus biological_process
GO:0015031 protein transport biological_process
GO:0016578 histone deubiquitination biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0071819 DUBm complex cellular_component
GO:0000124 SAGA complex cellular_component
GO:0070390 transcription export complex 2 cellular_component
GO:0005643 nuclear pore cellular_component
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041294.1 True 601 mRNA 0.40 4 41746288 41747390

Neighbor

gene id symbol gene type direction distance location
nudcd1 nudc1 coding downstream 70600 41644320 ~ 41675688 (-)
LOC110487689 plec coding downstream 136908 41469563 ~ 41609380 (-)
eppk1 LOC106598963 coding downstream 301155 41418547 ~ 41445133 (-)
LOC110488433 LOC106569773 coding downstream 608732 41126017 ~ 41137556 (-)
usf2 LOC106569770 coding downstream 697631 41019276 ~ 41048657 (-)
G2329969 NA non-coding downstream 1983 41743882 ~ 41744305 (-)
G2329876 NA non-coding downstream 167476 41578378 ~ 41578812 (-)
G2329742 NA non-coding downstream 261217 41484866 ~ 41485071 (-)
G2329608 NA non-coding downstream 414751 41331122 ~ 41331537 (-)
G2329566 NA non-coding downstream 418044 41327942 ~ 41328244 (-)
G2329984 NA non-coding upstream 778 41748168 ~ 41748431 (-)
G2329997 NA non-coding upstream 11197 41758587 ~ 41764759 (-)
G2329998 NA non-coding upstream 17612 41765002 ~ 41765349 (-)
G2330000 NA non-coding upstream 22498 41769888 ~ 41770104 (-)
G2330006 NA non-coding upstream 37296 41784686 ~ 41785165 (-)
G2329495 NA other downstream 488948 41253995 ~ 41257340 (-)
G2328836 NA other downstream 1096866 40648804 ~ 40649422 (-)
G2328315 LOC106570114 other downstream 1537557 40208053 ~ 40208731 (-)
G2329999 NA other upstream 21378 41768768 ~ 41769560 (-)

Expression


Co-expression Network