XLOC_004233 (col6a2)


Basic Information

Item Value
gene id XLOC_004233
gene name col6a2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33921358 ~ 33960318 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008087
CTGGGAGAAGCGCAGAGGAAACCTCTCCTGCAGCTTGGCTTCTCACTCACTCCCTCATTTTGGACTTTATTCTGATTTCTGCTTCTACCTGGTTCGGAATGTATGCTTGGTAGTCCTCAACATAAGTCATCAGTCGAGAAGTTCTTTAGATTCTCTGGTCTTGGGTGGGAAGGAGAGTGAGGATGATGAGCTTGTCGATCCTCCTCCTGTTGTTTGTGGGTGTTCATGCACAGGGCCAGACTCCAGCCGGCTCTTCGTGTAGTCCTATAAAGAGTACCGAATGCCCGATCGACTTGTACTTTGCTATTGACACATCTGAGACCATCGCTCTTCAGGAGAATCCGCCAGGCAGCTTGGTAGAGAGTATCAAAGATTTCACCATCAGATTTGCTGAGAAGCTCCAAAATGTGAACTACAGAGGATCCGTGAACATCACCTGGGCCATCGGAGGACTCCACTTCTCCCAGCTCCAGGAGTTCTTCAGCACCATCACCACTAAAGAGAAGTTCATCAGTAATCTCCGGCCCATCAGATACCTAGGCAGGGGCACGCACATTGATTGCGCCATCACCAACATGACCAAGCAGCTGGTCCGCTTTCCATCCAGACCCGATGCCAAACGATTCGCCGTGGTCATCACTGATGGTCACGTGACTGCGAACCCATGCGGAGGGATCAAAGTGGCGGCAGAACGGGCACGCGATGAAAATATTAGGATCTTCGCTGTGGCATCGTCCAGGAATTTGGAGGAGACGGGACTCAGGGAGATAGCAAACTCACCCGCTGGAGTTTACCGGGATAAATACATGGCGGTGAATCTCACTGGAACACGGCCGGTCATTGTGACGTCCACAATCGATCGCATTTATGACACAATGCTTCATATGGCTTACCAAGAGTGCTACTCTACCAAATGCTTGGAGACTCCAGGACCTCCAGGTCCCCCAGGACACAGAGGACAGAAAGGAGCTAAAGGAGATAATGGGGGCGCTGGCCTTAAAGGTGAAAGGGGACGACCTGGAGATCCTGGTATTGAAGGACCCATTGGACATCCTGGTCCTAAAggAGAGCCTGGTCTCAAAGGAGAAAAGGGAGAAATTGGAGCACAAGGAAAAAAGGGTGTTGCAGGAATAGCTGGCCGTGATGGAAAAGATGGACAGAAGGGAAAATTTGGCAGGATTGGTGCTCCTGGCTGCAAAGGTGATCCAGGTGACAAGGGTCCTGATGGTCATCCTGGAGATGTTGGAGAGCCTGGTCTTCCAGGCGCTTTGGGAGATAAGGGTGATCGAGGTCGTCCAGGAAGATCAGGTCCTCCAGGCCCAGCTGGAGATCCTGGACCAAAAGGAGAGAGAGGAAGTCCTGGATCGCCTGGAATTCCTGGCACAAAAGGAGGCgctggGACAGCTGGAGGACCTGGACCCAAAGGAGATGCTGGGCGAAGAGGAGATTTTGGACCTAAAGGAAGCACTGGACCTAATGGGGCAAAAGGAGAGAAGGGTGAACCAGGTGCTGAGGGACCCAGAGGTCTTGCAGGTGAAGTTGGCGGCAAAGGATCCAAGGGTGATAACGGACTTCCAGGACCAAGAGGCCCACCAGGAGCTCCTGGAGATGCAGGCAGAAAGGGTTCATCAGGTGACCCAGGTGATTCTGGCCCTAGAGGTGAtcctggccctccaggaccaaagGGTGATTCTGGCAGACCTGGATTCAGCTATCCTGGACCAAGAGGACCAACGGGTGACAGGGGTGAAAAAGGTTCTCCTGGACCCAGGGGAAGCAGAGGAGACTGTGGGCCAAAGGGTGACCCAGGTCTAAAGGGAACTCCAGGAGAGCCGGGAGAACCTGGCCCAGCAGGAGAGCCTGGACAGAGGGGTCCTAgaggagatggaggaagagaTGGTGATCCTGGACCAGAGGGAGATCCTGGCCTTACTGAATGTGATGTCATGAACTACATCAGAGAAACCTGTGGATGCTGTGATTGTGAAAAGAGATGCGGTGCCCTGGATATTGTGTTTGTGATTGACAGCTCTGAGAGTGTGGGGCTGACCAACTTCACCCTGGAGAAGAATTTTGTGATCAACACCATTAACAGACTGGGCTCAATCGCTAAAGATCCCAGCTCTGAAACAGGAACTCGAGTTGGTGTCGTCCAGTACAGTCACAACGGAACATTCCAGGCCATTCGACTCAACGACTCCAAGATCGACTCCATGTCAGCCTTCAAAGATGCTGTGAAGAAGCTAGAGTGGATTGCTGGAGGAACGTGGACTCCTTCAGCCCTGAAGTTCGCCTACGATAACCTGATTCGTGACAGCCGTCGGTCAAAAGCCAATGTGACGGTGGTCGTAATCACAGATGGTCGGTATGATCCCCGGGATGATGACAAACTGCTCAATTACCTCTGCACCGACACCAGCATTGATGTCAACGCTATTGGTATTGGAGATATGTTTGACCAGCCGGAGGAAAACGAAAGCTTGAAGTCTATCGCCTGTAGAAAAGATGGAAGAGTCATGGGAATGAGGCGTTTCGCTGATCTGGTCGCAGAAGATTTCATCGACAGGATTGAGACTGTGCTTTGTCCGGatCCTGTGGTCATTTGCCCTGATCTTCCATGTAAAAGTGAGCCAGCCGTGGCCAACTGCATCCAGCGGCCTGTTGATCTGGTCTTCATGCTGGACGGCTCAGAGCGTATGGGCCAGGAGAATTTCCGCTATGCACGTGAATTCGTGGAGAATGTGGCCAACCGTCTCACACTAGCTCAGGGAGATGATGATGAACGCAATGCAAGGGTGGCTCTCCTGCAATATGGAGATGAAAACCAACATCAGTTGGCCTTCAAACTAACAAATAACTTCACCGTCATCGCTGATGGCCTGGCCAACATGAGGTACCTAGATTCAACCTCCAATGTTGGAAGTGGCATCATCTACGCCATCAACAATATCGTCACAAGCAGAGGCACTCGATTGGCAAGACGAAATGCAGAGTTGTCGTTTGTCTTCATTACCGATGGGGTCACCAGTAACAAAAACCTGGAAGAGGGGATTAGTGCCATGCGCAGAGCCGAGGGCGTTCCCACTGTCATTGCCATGAGCAATGATGTTGACAAGGAAATCCTTGCAAAGATTTCCCTGGGAGACCAGACGGCCGTTTTCAGGGGTGAAGATTTTGCCCGTCTGAACAAAGCCAGCTTTTTTGAGCGATTCGTTCGGTGGATCTGCTGAGATGTTGGGTGGGTTTTTTAGTAAACAGGGGGATTGGTGTGTCCccacatagaaatctgatataagGCAATATATGCTATTTACATCCATGATAttcaagttcatatttggatttcacatatatgaacaacccaggctcattattgatacagaCCCCTATATACGttgcgaaatacatcccaggagctacgttattttgcagtttatgtttttgcaaatgcaccagaggctgctgtataTCTCAAATTTACCCCGCgggtgccattcgtgcctgctgttctcaccaaaatccaccagaggctgctgtcgactgactgactgaccgattgaccgACCGATACCCCCAACCACCCCCTTCTcgaaacccaaccaatagtgttttcaaagcccAGATTGACCTAATCACCCTCTTAGCTAAACTCAAGTGTTTTCAAacgcaatccagaaaaagaaaagccccctggtTTTTACCACACTTtgggattttaccacattctcaccctgttatttacttgtttattttattttttgccttttgtttttttgttttacctgctttctgtatctgttcttcaccggactcatgAACCCCATtgtcgcagtcaactcctctctgcttcacaagtccgccgacatacaaGGCGAGCctctgggcaaactggtaacagcagaaaagctgtcctTATGgaagtaagcagtcagctggtagtgagaaaacaaacagAAGTCATCGGCgccgtcataccgccctgtagctttcatttaaagatgaaatgcagctataTGTAGCTCTGTCTACATAATGCGcgcactccagaaatgtatacgggggtatGTTTTCAGTTTGAACCTAAGTTGTATAGAAAATATGTCATACATACAACATATATTTCCAAATATTGCAAATCATTGGatatacaaatatgtacatatgtatTCAAATATATTAGCTACACATATTGGCAATatatgaacacacaaacacacacacacacacacacatcaaatataaatacaatttagtttaaattttgtagtttgtataattttatttgcaATAACCCGTGACCAAagtcttattttaagaaatttaactgattaataaaacatttttacttaaatGCACCAGAAATTAttagttatattaaaaaaatagattaaaaatattcattttcaaggGAGttttactcatttatgctgagcattttaaataaatatttgaacatatatgtacatatttccTATGTTCCTATggttaaaaatgtatgtgtgtgtatgtatgtatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacatatacaaagttaaagtcagaattattagccacctgaATTATAAGACCCcctgttatttttttcccctcaatttctgtttaacggagaagcttttttcaacaatttctaaacataatagttttaataactaatttctaataactgatttattttatctttgacatgatgacagtaaataatatttgacttaatatttttcaagacacttctatacagcgtatGTGTgacataaagtgacatttaaaggcttaactaaattatttaggttaactaggcaggttagggtaattagaaaagttattgtatagcgaaggtttgttctgtagacagtcgaaaataaaatagcttaaagggactaataattttgaccttaaaatgtttaaaaaaaataaaaaacagcttttattctagacaatgtatatatttataaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgcaaaatctAAACATGAACTTTGAATTACAAACATGACAGATTTCTTTGTATCAGATTTCTGAATGGGTCAAAGGGTTCAACAAAATGATTAGAtgcatttattttcagtaaatatgcACTTCATGGTAACAGAGGTTAAATTGGTTTGTTGTGCAGAGATAATGACTTACATATTTTTATAGCTGAAAACCTTAAAAGAATGCTGTTTTTTGATTAGCTTTAACTTGAGGATGCACCAATGGCAATGGGGGGTTTGGGCACAGGAAGATACTGCAGTAAACCAAAAGATCCAATTAGTAGTAACACTCCAAAGAATATGTACTGAATGTGTATGTTGACAATGTTgcaattgtagttttttttttatttctgtatttttaatgcTGAAAGGCCTCTAAGCTGAATTGTTTGTTTGATATATTCCTCTACACAAGGTGCTAAACCAGAGTAAGACTGGAGTTCAGGATGCACATTTGTAAAAGTGCACTAATTCAGGTGTATAAACAGCCATTTCAAAGATTACACTTGCCACGTTGACATTTATACAGCAAAAATGTGCAATTTCAATTGGCATTGACTTAAAAAGGGCCTGGATAGCTGAATGAATTAAATCTACACTACTTTCCACAGCATGTGCACTCTTAATCCAACACAAGCAGATTCAGAATAAACATTTGCTTAAGTACAACATCGAAAGATCATTTTAAGACTATTGTTAGGAGCACGATCACTCACTTAATTCCAGAGCCAAAGGgaacatttatatatttgacaTGCTGTTGGACACTTGAAGGATTATTTCCAAAGTTGCTGTCAAACTGAAATTTTAGAACAATAAATCAAGCTGTGGTAACA

Function

symbol description
col6a2 Acts upstream of or within axonogenesis; muscle cell development; and muscle organ development. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in several structures, including anterior segment eye; gut; integument; musculature system; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Ullrich congenital muscular dystrophy. Orthologous to human COL6A2 (collagen type VI alpha 2 chain).

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0007517 muscle organ development biological_process
GO:0007409 axonogenesis biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070501-7 Acts upstream of or within axonogenesis; muscle cell development; and muscle organ development. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in several structures, including anterior segment eye; gut; integument; musculature system; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Ullrich congenital muscular dystrophy. Orthologous to human COL6A2 (collagen type VI alpha 2 chain).

Ensembl:

ensembl_id ENSDARG00000061436

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008087 True 5960 mRNA 0.43 28 33921358 33960318

Neighbor

gene id symbol gene type direction distance location
XLOC_004232 phka2 coding downstream 2049 33870357 ~ 33919309 (-)
XLOC_004231 si:ch211-227n13.3 coding downstream 52450 33861177 ~ 33868908 (-)
XLOC_004230 nxph2b coding downstream 63447 33846440 ~ 33857911 (-)
XLOC_004229 NA coding downstream 232409 33676834 ~ 33688949 (-)
XLOC_004228 lims1 coding downstream 302746 33598213 ~ 33618612 (-)
XLOC_004234 CR925698.1 coding upstream 5840 33966158 ~ 33966272 (-)
XLOC_004235 NA coding upstream 31715 33992033 ~ 33993147 (-)
XLOC_004236 col6a1 coding upstream 36208 33996526 ~ 34065718 (-)
XLOC_004237 tdo2b coding upstream 124214 34084532 ~ 34097437 (-)
XLOC_004238 atp13a3 coding upstream 156416 34116734 ~ 34147205 (-)
XLOC_004063 CR854846.1 misc downstream 17793680 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 21229667 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 21299591 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 21330062 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 21408096 12512966 ~ 12513262 (-)
XLOC_004227 NA non-coding downstream 519882 33305132 ~ 33401476 (-)
XLOC_004226 BX530032.2 non-coding downstream 722754 33190658 ~ 33198604 (-)
XLOC_004225 NA non-coding downstream 741563 33163180 ~ 33179795 (-)
XLOC_004224 NA non-coding downstream 856805 32977282 ~ 33064553 (-)
XLOC_004243 FO681390.1 non-coding upstream 289138 34249456 ~ 34255220 (-)
XLOC_004244 NA non-coding upstream 355207 34315525 ~ 34358689 (-)
XLOC_004245 BX548160.1 non-coding upstream 395226 34355544 ~ 34355662 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_07716780_07727777 COL6A2 coding CI01000306 null 7716750 ~ 7727854 (-)
bowfin (Amia calva) AMCG00001188 NA coding CM030137.1 CM030137.1 18462098 ~ 18494601 (+)