LOC110514453 (LOC106596281)


Basic Information

Item Value
gene id LOC110514453
gene name LOC106596281
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493666.1
NCBI id JAAXML020000359.1
chromosome length 1258143
location 938871 ~ 948116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110514453
ATGTTCCTGTACGGAGAAGATTCAGTGTTGGATTGTCCCAGTGATTCTGATTGGGAGCCTATACTGCCAAGGAGCAAATCCGCCATCCAGCCGGAGCCATGCTGTCTCAGGCACCACACCTACCCCCGCCCGGCCATCAAGAGGTACGGGGCTAAGAAGCAGGAAGACCTGAGAAAGCAGGAGATGTGGGCCTGTGGCACCATTCGGTCCAACAGAGTGGGCTTTCCAAAAACCAGGGTGAACGACATGCCTAAGCGGGCTACCATGAGATGGATCCGTGAAGATGGCCTGCTGTTCGTGAAGTGGATGGACACCAGAGAGGTGAGTGACCCCGGGCAGGGTTACGAGTTGATCCCCcgtgtctgtgtgggtcagagTGACCCCGGGCAGGGTTACGAGTTGATCACCcgtgtctgtgtgggtcagagTGACCCTGGCAGCCTTAGCAAGagTGACCCCGGCAGCGTTAGCAAGGTTTATGTTGTAACCCTCCTACCACTGTCTGGTCTGGGTCAGAGTGACCCTGGCCCTGTGTTACGAGTTGTTCCCCTGTGTCTGGGCCGGGTCAGAGTGACCACAAGAACTCAAGAAACAAGAACGCCAGCCAAGCGTACCGGATGGGCCGAAGGGTCCGAAGGAGCAGACAGGGCCGACCGCGCGCCTCGTCCGTTCGCGCGCCTCGTCCGTTCGCGTGCCTCtagaagaaggaagaagaagaagaagaagaagaaagaagaagacgAGGACAACGACGAGGAGGAATACGACCCCGCCGAGCGTGAGCCCTCCGCCTACGACTGTAAGCCGGCCGTCCTGGAACAGATATCCTCCAGTGTCGACCAAGAAGACGAGGAAGACTACTTGGAATCCGAAGAGGAGGACGTTTCGGAAGATGAAGACGTTTCGGAATACAACCCAGAGCGTGATGCGGACGACTACGACGACGACTCGGCCTCAAGCCCGGACCGGCTCCGCGCCATCCGCCGCCACGGCTCCGTCACGGCCTACGCCGCGTCGCGAGCGCTCGACATCGAGTCCACCTTCCGGCTGTTTGTCACACCGGCGATAGAAAGGATCATTGTGGACATGACAAATCAGCAGGGGGTGAGAAAATACGGCGACGGCTGGCGACCCATGGACTCCACCGACCTGCGCGCCTACGTAGGGCTGCTGATCCTAGCCGGCGTCTACAGTTCCCGAGGCGAGGCCGCGGCCAGCCTGTGGGACACCGAGAGCGGCAGGACCGTGTTCCGCGCCACCATGCCGCTCAAGGTGTTTCACAAGTACTCGAGGCTGCTGCGATTCGACGACCGCCAGTCGAGACCCGCCAGACTCGCCACCGACAGACTGGCGGCCATAAGAGAGGTATGGGACCTGTGGGAGGAGCGGCTGCCGGCCCTCTACAACCCGGGCCCCGACGTGACGGTGGACGAACAACTGGTCCCGTTCAGAGGACGCTGTCCTTTCCGACAGTACATTCCCAGCAAGCCGGCCAAATACGGCATCAAGTCGTGGGTGGCCTGCGACGCCAAGTCCAGCtacgcttggaagatgcaagtctacacCGGCAAGGCGGCCGGCGGAGGCCCCGAGAAGAACCAGGGCGCCCGCGTCGTCCTCGATCTGACCGAGGGACTGCCGGGCGGTCACAACGTCAcgtgtgacaatttcttcacctccTACGAACTGGGCCAGCGGCTCCTCGAGAGGAACCTCACCATGGTGGGCACGGTGAGAAAGAACAAGGCCGAGCTCCCGCCCGCGCTGCTCGAGTCAAAGGGCAGACAGGTCCTGTCCTCCAGGTTCGCCTTCACGCCCACCGCCACTCTAGTGTCCTACCTGGCAAAGAGAAATAAGAACGTGCTACTTCTGAGCACGCTGAGCCCGACGTTAGCGATCGCCGCGACCGGAAGCCGGCCCTCATCCTAGACTACAACTGCAACAAGGGCGGCGTGGACAACCTAGACAAGGTGGTCGGGACCTACAGCTGCAGACGGATGAccgcccgctggcccctggtcatcttccacaaCATCCTCGACGTGTCCTCCTACAACGCCTTTGTCATATGGCGAGAGATCAAGCCCGACTGGATGCCTGGGaagcggaacaagaggagggtgttcctggagcagctcggAAATGCACTCGTGAAGCCCTTGATACAAAGAAGGCAGCGTCTCCCCCGCACCCAAGCCGCGTCCGCACTTGTCAAAGTCCTACAGAGTGCCACCGCCGAGGCTCGTCCGCCAGCCCGGGAGCAAGCCGCTGGCCCGGCCACCGCCGCCCCAGCCGCCCCGCCGGTGGCGAGTAAGAGGTGTCAGCTCTGCCCACCCAAGAAGGACGCCAAGACCTACACCGCGTGCTGCAGGTgtaagaaatacatctgcaaaggctGTTCACACGCATACTGTCAAACTTGTGCCCACTGGGCCTTTAGCCAAGACGGGACAGGGTGA

Function

NR:

description
piggyBac transposable element-derived protein 4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110514453 True 2459 mRNA 0.61 9 938871 948116

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-262 NA coding downstream 16845 921955 ~ 922026 (-)
trnat-ugu-119 NA coding downstream 17588 921212 ~ 921283 (-)
trnaa-ugc-261 NA coding downstream 19022 919778 ~ 919849 (-)
trnaa-ugc-260 NA coding downstream 21198 917602 ~ 917673 (-)
trnaa-ugc-259 NA coding downstream 22835 915965 ~ 916036 (-)
trnat-ugu-120 NA coding upstream 57424 1005540 ~ 1005611 (-)
trnaa-ugc-263 NA coding upstream 58036 1006152 ~ 1006223 (-)
trnat-ugu-121 NA coding upstream 59500 1007616 ~ 1007687 (-)
trnaa-ugc-264 NA coding upstream 60112 1008228 ~ 1008299 (-)
trnat-ugu-122 NA coding upstream 61576 1009692 ~ 1009763 (-)
G2340974 NA non-coding downstream 3607 933491 ~ 935264 (-)
G2340968 NA non-coding downstream 17773 917005 ~ 921098 (-)
G2340897 NA non-coding downstream 119245 811254 ~ 819626 (-)
G2340903 NA non-coding downstream 121057 810062 ~ 817814 (-)
G2340902 NA non-coding downstream 122468 808537 ~ 816403 (-)
G2341006 NA non-coding upstream 57807 1005923 ~ 1040396 (-)
G2341021 NA non-coding upstream 110689 1058805 ~ 1115633 (-)
G2341025 NA non-coding upstream 111741 1059857 ~ 1064279 (-)
G2341020 NA non-coding upstream 120465 1068581 ~ 1074200 (-)
G2341032 NA non-coding upstream 169645 1117761 ~ 1120758 (-)
G2340951 NA other downstream 9739 878809 ~ 929132 (-)
G2340905 NA other downstream 124216 806890 ~ 814655 (-)
LOC110514508 LOC106595224 other downstream 822155 114200 ~ 116716 (-)
G2340407 NA other downstream 875733 62414 ~ 63138 (-)
G2341053 NA other upstream 210482 1158598 ~ 1164054 (-)

Expression


Co-expression Network