XLOC_000043


Basic Information

Item Value
gene id XLOC_000043
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2001716 ~ 2005632 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003015
CTTAATTTGCTGGCgttcatgtgttttcttaaactgcAGCATGTTAATCTCTCTCGGTCACTGTAGAAACTACACTCTCAGAGGAATAACTACTGAATCAGAGTCAACAGCCAGGATTAAATGCTCTGATATTGCACTAAAACCCATCATTATCAGCCAGGAAACATTTCTGTTGGATATAGGAACGTTTGGTAAGTCCAGAAATGTTCAATGAGAAACTGAAGGATTATTTTACACTACATCAAGCTCCAAAGAGACTGCTTCCAGATCAGGGTTAAAAACACTAGCTTATACCGTGATTCTTCTGAGTTTGGTGCTACTTTCCCCTTTGCGAGACATGGGAGGAGCTGAACCCACGTCACAATGTGAACGCTGATGTTTTATTTGTGATTTTGTGACTGTTCATTTCATCTGTATTTTGGGAACCGTTCGGTCTTGTTCTCCAATCCGTCCAGAGTTTACCAGCTCTGACTCAACTCTGGGCTTCTGAAAGCTAACTAGCCAACTGCTGTCAGCTGGTCAACTGTAATGCGACAGGGGTGGCCACACTAGATTGTCAGCTTATTAGATTAATTAGGACCTGGCAGAATATGTTTTATGAATGGATAGtattttgttaaatacattttacatctcATTGTTAAAACATggcatcttttcttttttaaagtgacAATACAACTACAATCTAGCTAACTAGCAAGACCCTCGAAACCACATTGCAACCAGagttgggtaaaaaaaatatatacgttACAATTTTAAGCCTATCTTGCGCTTAAAAAAACAccttttcttaaaaataaaataataaacagattTAGTTACTgtctttaacaaagtgacttaagattataatatattattatttcccaACACTGATTGCAACATATTAACAACTGCTTTTAAAGCTCCAGTCATTGATTAGCAAGTCTGTAGCAGCCACTTGAATGGTTACAGCTAACTGGCAGCAGCCTCGAAAACACTTTGAACATCATAGCAACAGCCAAAGCACCTTGGCAACCTCCTAGAAATACTACTACATTcacaaaaatatagacagcgtcctgtagtggatttgtcatttgaaatatACAACAAAACGTACAGTATATAAACGTACAAAACGTACGTACAAGTAACGTATTTcacattttacaaaaatgttgacagcgccctctagtggatttgtcatctgaaatataCTGCCAAACATACACCAAGTAACGTATTTTTTAATATGCAAAAATGTCagcagtgccctctagtggattagttATCTGAAATATACAACAAAACGTACACCAAGTATCGTATTTTACATTTGGAAAAAATCTTGACGGCACCCTCTAGTAGACAATAAAACAAACCCTAATGTAttgaaaattttcaaaaatgtcGACATCGCCCTCTAATGGACTTGTCATCTGAAATATACAACAAAACGTACactaagctatatattttctacatttacaaaaatgtcgACAGTGCCCTCTAATGGATTTGTCGTCTCAAATATATAATCAAACGCACACCAAGTAACGTATTTTACATTAAGCAAAAATGTTGACAGCACCCTttagtagatttgtcatctgaaatatataataaaacaaacccTAACGTATTTCAAGTTTTCAAAATTGTCGACAGTGCCTTCtaatggatttgtcatctgaaatataTAGCCAAACGtacgtattttacattttacaaaaatgtcgacagtgccctctagtagatttgtcatctgaaatgtacaaccaAACGTACACCAAGaaacgtattttacattttgctaaAATAACTAGTGCCCTCTAATGGATTTGTTGTCTGAAATATTCTGCCAAACGTACATcaagtaatgtattttataatatgCAAAAGTGTCggcagtgccctctagtggtttTGTTATctgaaatatacaacaaaatgtacacCAAGTAACGCATTTTACTTTTTGCAAAAATGTCGACAGTGCCCTCTAGTAAATTTATCTTGTGAAATATACAACCAAACGTACAGCAAGTAACGTATTTTACAATTCAAAAAAATGTCGCCTGCGCCTTCTgatggatttgtcatctgaaatccgcttgttaagtggtgacgtgtttttgacgtatgtaatactgtttccgggtccaagccgctcttcatttgagttgagaaatcattcgtttatgatcactttttattcatatcacacactaaagttaattttatataaagtcatagtgtacacaacaatctctgggcttgctgcatcacaaataccaaaatttgaacaatttataaaaaaatgaatcactttctggccattggatattaggcatggacatatatattgcgattgtgattttcgaaagtattaaatcgctttgtaaacgtttattattaccatattATTACCATAGTCTCCCCTTTCAGTTGAATAGaacgcttggacctggaagccgcttcgcgtgacgtcacacttaacaagcagatatacAACAATACGTTTCAATAAGTAACATATTTTACAATTAGCAAAAATGTCGATAGCACCCTCTAGTGGTTGTGTTAACTGAAATATACAACTAAATATACACCaagtaatgtattttacattttgcaaaaatttagacagcgccctctagtggatttgttttaTAAAACGTAAAACAAGacacaccctaagtaacgtatttcagctttggaaaaatgtaaacagcgccttccagtggatttgtcatctgaaagatACAATGAAACGTATCTAAAGCAACATATTTTACGTTTCGCAATAATATAAGCTAAGGCAAGTATTTCTAACCAGTCTGActtgcaatatatatattgtgcatcccttaCACAAATATGAATGAAGGTTACATGATGAAGGTCTAGTGTGGCTGCTCCTCAAGAAGACATAATATTGACCCAGTGACTCCTGAAGACGGGTCAAATGAAGTCATACAGAAGTCAGGGTTTTGCTTCGGTTGAATCTGTGCCTTGGGCCTGGTCTTGAAGCTCCACTACAAACTCATTCAGAAGCTCCAGCGCTGCTTCACGGAGCAAGTAGAGCTGAAATTAGTGCATTAGGGGCCAAAAGACCCTCAAAATGAGCACTCTCGTCTCCAGTGAGGCCTCAGGGGCATCGGCTGACCTTCTTCTTCTTTGTCTGTTTTTGAAGATCTTTGTCTCACTCCTGAAGCTATCGTCTGTCTGCGCTGGGATGAAAAAAACCCATTGAATCTCCCATATGGATATTGACAGTGTTTGTGCTCGGCAAACATTCTGGATTGGGTTTAttctccagctctttttcttcagTATTAGATGTTTGACATTAATTCAGCGCTAAAAATGCATACAGACTTGTAAAATCCTTTCGGTCTTCAGAAGTGCTTCGGGTTTTATAAACTTTAtctctttgtttttattattaatttttaaaagatattGAAGTTTGAGGCTGTCTTTGACATTGTTTGAATGTGAAGTTGAAATGTTGTTGATGTCATCATGCAAACTAAATTgcgatgtttgtgtgtttgcatacTGAACACTACGagtatgatatgatatgatacaaTAGAAAGATGGAGTGAGCAACTGCTTAAAGAATGGTCTAGATAATAATAAGCATGCTAAATGAGTTGTTTTAGAAGGAACATGGACAGCAGGATGTGATGTCATAGTCCAGCTCTATTGTTTTAAGaggtaataaattataaataataataaatttaatatgttttaatatcaTCTGTTGGAGTTTGCACACtgaattgtgatttttattttgtttattgttattttttggcttggtttggtttgt

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0048513 animal organ development biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0040011 locomotion biological_process
GO:0021954 central nervous system neuron development biological_process
GO:0061564 axon development biological_process
GO:0007399 nervous system development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0005588 collagen type V trimer cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003015 True 3832 lncRNA 0.36 2 2001716 2005632

Neighbor

gene id symbol gene type direction distance location
XLOC_000042 si:ch211-132g1.7 coding upstream 1359 1941031 ~ 2000357 (+)
XLOC_000041 si:ch211-132g1.1 coding upstream 78463 1915967 ~ 1923253 (+)
XLOC_000040 si:ch211-132g1.4 coding upstream 90335 1904419 ~ 1911381 (+)
XLOC_000039 si:ch211-132g1.6 coding upstream 101868 1896737 ~ 1899848 (+)
XLOC_000038 atp1a1a.5 coding upstream 151612 1838164 ~ 1850104 (+)
XLOC_000044 NA coding downstream 17777 2023409 ~ 2023645 (+)
XLOC_000045 slc5a3a coding downstream 19453 2025085 ~ 2027100 (+)
XLOC_000046 mbnl2 coding downstream 95909 2101541 ~ 2217861 (+)
XLOC_000047 rap2ab coding downstream 216731 2222363 ~ 2240119 (+)
XLOC_000048 kpnb3 coding downstream 254775 2260407 ~ 2299553 (+)
XLOC_000034 NA non-coding upstream 382402 1617203 ~ 1619314 (+)
XLOC_000032 NA non-coding upstream 423465 1571847 ~ 1578251 (+)
XLOC_000031 NA non-coding upstream 640885 1358731 ~ 1360831 (+)
XLOC_000030 NA non-coding upstream 659479 1315289 ~ 1342237 (+)
XLOC_000029 CR450787.2 non-coding upstream 782911 1218691 ~ 1218805 (+)
XLOC_000049 CR352215.1 non-coding downstream 269973 2275605 ~ 2275742 (+)
XLOC_000051 CR352215.2 non-coding downstream 397471 2403103 ~ 2403224 (+)
XLOC_000053 NA non-coding downstream 1713034 3718666 ~ 3720603 (+)
XLOC_000054 CABZ01063288.1 non-coding downstream 1754292 3759924 ~ 3760034 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G403725 NA non-coding CI01000299 null 132613 ~ 136933 (-)