LOC120569099


Basic Information

Item Value
gene id LOC120569099
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17412053 ~ 17421098 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU7400
gcattttcaaatgcatgctatatactatattttttgatgttttcttCATACTATTACAAGCAGCCATTCATTTCTGTCCAATATGAAAATCTGCAGGCTCTTGAAACTCGCTCGAGTTGTGTAATCCATCAAAATGAACACAAATCCACATTGATTTTTGGTTTATTATCTTTGCAGGACAAAGCAGTGCAGACTATTCAGATCAATCTGCACTCAAAATGCTATAccacacagcacacactgataatgtcactttgattaaaaaCATGAATGCACATTTGTTGTCCACTGTGATAGATTACACAATTCAAACAAGCTTCAGGTTAGTTTTATATCATGAAATAAATGGAAACCCGTGGCCGCTAGATTGTACAGATGTACCTAATAAACTCTAAATGCATTTAACTCTAAATTACAGACTtgttcccccctttttttgtaAAGCTCATTTATGTCCCATTGTAGCTGCAGGTGCAGCCATCACCAGAGCCGGCAGTTGAGCTCCTTCCCCGTCTGTGTCACCTGGTGAAGGGGGAGCACGGCTACGGCTTCAACCTGCACGGCGATAAGAAAAAGGGTGGACAGTTTGTGCGTTCAGTGGACCCCGGCTCAGCCGCTCTGAGTGCAGACATCAGGCCTGGAGACAGACTTGTGGAGGTGAATGGAGTGAACATAGAGGGCTTGAGGCACTCAGAGGTGGTGCTACTCATTAGAGCAGGAGGGGAGGAAGTGCGCCTCCTAGTGGTCGATCAGGAGACGGACGAGCTCTTCCACAGACTGGGGATCACACCCAACACCAGCCATGTCAAAGGTCAAattATCTTCATCTGGATGAATCAGCCACAGAAAGTGCCCCACCCAACCCCTCTCCAACGACTGAACTCCCCGCCACAGATCCACCAATCATAAACGTCACGCTGACAGACTCCCCGATCACAAATACATCTCCAAAATCCCGGGTCACTGGGAGCTCAGCATCCCATTCCTCGAGAAGTTCCACCACCCAATCAGAGATCAGCAGCTCGGACATGAGCATCCAGGTCCCTGATGAGGACGACAGGCGTTGTTCGGACCCTTTCGTGGACAGTGGCCTCCGTCTGAGTCCCACAGCCGCTGAGGCTAAACAAAAGGCCCTAGCCAGCCGCAAAAAGAAGAGAGCACCTGTTATGGACTGGAATAAGAAACATGAGATCTTCAGCAGCTTGTGACCCCAGAATGTAAGgagcaaaaaaaagagaagaacagCATAGAACGAAGAATAATATTGTGATTCTTCACAGTTCATATTGTAATTTTAAGTACTGTTCCTCGATGTTGCAGAGGCACGGTAAAAGAAAGAGTAATGTGAAAAGGGAAAAGGCGCAGGTAGTAACATTCATAGTAATATTCCTAAATTCTGCTCTGTGTAAAAAGAAGATAAAGATATCAAATAGTATTTTCTAGATGCTTATTTTACAGTATCTATAAGGACAAAGAAATGTTCTATGGATGTGTCAGAAATCTTACAATACACTACATTAAACGATAGCACTAATGGCCATGGTGCCTGGTCAGTACACAGTGTTTCTCTTCATTAAATCATAGTCATTTCAGAGCCATAGTGACTATGCATCTGTAACCGTATTTTTAGGCCGTATTTTCTGTAGCTACGCTTTCTGTTGTAACTTTGGTAGATTTCATTTTTTGAAGTAATAGTTAAATGTcttttcaatttacaatgagCTCATCAAAGCTGAGTCCTGGAGTAGTTAtattaactttttgtttttcaatttaaTGTAGCATATCACTTTTAGATGTAAATACAGAGGAAATGGTATAGAGGCTGAGTTATGAAATGTATTATGTTGGATCACCTCAGTGCTTCTCTTCAATGATATCTGTAAAGGAAAATATTTAAGCAAATGGTTGACTAATGGATG
>XM_039816967.1
TGTGCGCTGCGGGGGGACAGTGGCATCTGTTGTTCAcgcctctctttattctctcaCCGGCTCGGACAGGAGGACACACGCCCAGTTGGCTAGGAGAATTAAGTGTTACGTGCGAGGAAAAGCTTTCTAATCTCTGATCTCTTGGATTATTCCTCCGATGGACGGGATTTAGCCCCTGTCCGCCGTTTTTGGCCACTATTTTATGTACACGTGCGCGCACCATTTTTGCGCGCTCATATTTGCGCCCCCAGCACTTGCATGATGGATTAAACACTCGTTAGTTTTAGCCTAGTTTTTTGATGTGTGCTCTCAGAACAATTGTGGATGCTAAATGATGATGGTCTTTTGGTCACTGGAGCGCGCAGCCGTACATTGGATTAAGAGCCAGAGGCTTTCCACCGCTCTTGGAACAATCACCTGTTTATTCTCCTGAGACACATTtacctgttgttgtttttttttgtttttttttgacgCGCTGGGATGGAGAGCGAGCTGAGACCCAGGCTCTGTTTCCTGACCAAGGGAGAGCGCGGCTATGGGTTTCACCTGCACGGTGAGAGGAATAAAGGCGGACAGTTCATCCGCAAAGTGGAGCCCGGCTCCTCTTCTGATCTGGCCGGGCTGCGACCAGGAGACCGGGTGGTGGAGGTGAACGGGGAGAATGTGGAGAACGAAAGCCACCATCGAGTGGTGGAACGTATCCGTGAGGTGGAGCACCGCACCAGGCTGCTGGTGATCGACAGAGAAACAGATGACTACTTCCGCAGCCGTGGCCTGGCCTGCACCGAGGACCTGGCCATTGAGATGGGAACCCTCTCCCCGCAGCCTTCGCCCCGGTCCACCCCTTCTAATTCTCCCTTACCCAGAGAGAACTCACCCCTGTCACCCCTGTCACCCCTGTCACCCAAACCAAACCACAAACACTCATTTTCCCCTCCTGCTGCAGACTTGTCcacacacacggccacacaAGCTAATGACAAGAGATCCTCATTGACATCAAGTACAGCGACAGACACAGAGCTGCAGGTGCAGCCATCACCAGAGCCGGCAGTTGAGCTCCTTCCCCGTCTGTGTCACCTGGTGAAGGGGGAGCACGGCTACGGCTTCAACCTGCACGGCGATAAGAAAAAGGGTGGACAGTTTGTGCGTTCAGTGGACCCCGGCTCAGCCGCTCTGAGTGCAGACATCAGGCCTGGAGACAGACTTGTGGAGGTGAATGGAGTGAACATAGAGGGCTTGAGGCACTCAGAGGTGGTGCTACTCATTAGAGCAGGAGGGGAGGAAGTGCGCCTCCTAGTGGTCGATCAGGAGACGGACGAGCTCTTCCACAGACTGGGGATCACACCCAACACCAGCCATGTCAAAGATCTTCATCTGGATGAATCAGCCACAGAAAGTGCCCCACCCAACCCCTCTCCAACGACTGAACTCCCCGCCACAGATCCACCAATCATAAACGTCACGCTGACAGACTCCCCGATCACAAATACATCTCCAAAATCCCGGGTCACTGGGAGCTCAGCATCCCATTCCTCGAGAAGTTCCACCACCCAATCAGAGATCAGCAGCTCGGACATGAGCATCCAGGTCCCTGATGAGGACGACAGGCGTTGTTCGGACCCTTTCGTGGACAGTGGCCTCCGTCTGAGTCCCACAGCCGCTGAGGCTAAACAAAAGGCCCTAGCCAGCCGCAAAAAGAAGAGAGCACCTGTTATGGACTGGAATAAGAAACATGAGATCTTCAGCAGCTTGTGACCCCAGAATGTAAGgagcaaaaaaaagagaagaacagCATAGAACGAAGAATAATATTGTGATTCTTCACAGTTCATATTGTAATTTTAAGTACTGTTCCTCGATGTTGCAGAGGCACGGTAAAAGAAAGAGTAATGTGAAAAGGGAAAAGGCGCAGGTAGTAACATTCATAGTAATATTCCTAAATTCTGCTCTGTGTAAAAAGAAGATAAAGATATCAAATAGTATTTTCTAGATGCTTATTTTACAGTATCTATAAGGACAAAGAAATGTTCTATGGATGTGTCAGAAATCTTACAATACACTACATTAAACGATAGCACTAATGGCCATGGTGCCTGGTCAGTACACAGTGTTTCTCTTCATTAAATCATAGTCATTTCAGAGCCATAGTGACTATGCATCTGTAACCGTATTTTTAGGCCGTATTTTCTGTAGCTACGCTTTCTGTTGTAACTTTGGTAGATTTCATTTTTTGAAGTAATAGTTAAATGTcttttcaatttacaatgagCTCATCAAAGCTGAGTCCTGGAGTAGTTAtattaactttttgtttttcaatttaaTGTAGCATATCACTTTTAGATGTAAATACAGAGGAAATGGTATAGAGGCTGAGTTATGAAATGTATTATGTTGGATCACCTCAGTGCTTCTCTTCAATGATATCTGTAAAGGAAAATATTTAAGCAAATGGTTGACTAATGGATGATAGTTGTTGTAGCTTTTTAAGGATTTGTCTCTCAAATGTGCTTTGGTTCTTCTCACAATGTGAAATAAACTTTCCAATTATGTGTAAA

Function

GO: NA

KEGG:

id description
K13358 SLC9A3R2, NHERF2; sodium/hydrogen exchange regulatory cofactor NHE-RF2

RNA

RNA id representative length rna type GC content exon number start site end site
TU7400 False 1922 lncRNA 0.52 4 17412142 17415066
XM_039816967.1 True 2564 mRNA 0.48 6 17412053 17421098

Neighbor

gene id symbol gene type direction distance location
rfx1b NA coding downstream 27022 17369504 ~ 17385031 (-)
si:ch211-196h16.12 LOC101466180,LOC100708390,LOC102193965,LOC103356221,LOC103465598 coding downstream 73435 17334937 ~ 17338618 (-)
LOC120569451 NA coding downstream 120580 17286966 ~ 17291473 (-)
LOC120559819 NA coding downstream 155606 17246549 ~ 17256447 (-)
sgsh sgsh coding downstream 250897 17155731 ~ 17161156 (-)
nthl1 nthl1,LOC102778712 coding upstream 2495 17423593 ~ 17428615 (-)
pkd1a pkd1 coding upstream 37676 17458774 ~ 17524846 (-)
exosc1 exosc1,LOC107700859 coding upstream 172918 17594016 ~ 17598848 (-)
pgam1b pgam1,pgm,LOC104945324,LOC104927840 coding upstream 181808 17602906 ~ 17606302 (-)
avpi1 NA coding upstream 193055 17614153 ~ 17617081 (-)
G5435 LOC104952676 non-coding downstream 61078 17348875 ~ 17350975 (-)
G5430 clg1h19orf53,LOC108236319,LOC103356219,LOC105917105,LOC106917567,LOC102229420,LOC106531096 non-coding downstream 78443 17331757 ~ 17333610 (-)
G5402 NA non-coding downstream 94233 17317276 ~ 17317820 (-)
G5418 NA non-coding downstream 100236 17311570 ~ 17311817 (-)
G5393 NA non-coding downstream 160589 17248985 ~ 17251464 (-)
G5506 NA non-coding upstream 136743 17557841 ~ 17613208 (-)
G5522 NA non-coding upstream 196089 17617187 ~ 17645665 (-)
LOC120560186 NA non-coding upstream 278162 17699260 ~ 17700389 (-)
G5608 NA non-coding upstream 282118 17703216 ~ 17734751 (-)
LOC120560178 NA non-coding upstream 316974 17738072 ~ 17739847 (-)
LOC120558720 NA other downstream 1064131 16345718 ~ 16347922 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 1726414 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 2507824 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 2692951 14712144 ~ 14719102 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 3369543 14018902 ~ 14042510 (-)
LOC120560175 NA other upstream 289541 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 396409 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 414806 17835904 ~ 17848037 (-)
LOC120556582 NA other upstream 458770 17879868 ~ 17881759 (-)
G5930 LOC102307335,LOC101466373 other upstream 1463870 18884968 ~ 18890220 (-)

Expression


Co-expression Network