clta (clta,LOC106959212,LOC106905474)


Basic Information

Item Value
gene id clta
gene name clta,LOC106959212,LOC106905474
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 19888376 ~ 19899439 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800703.1
AAGCTTTTTATTGTCGTCCTTCTTCCCGTTGAGCTAGCTAGTCGGTTTCGGTCAACCGCTACACCTGCCCACCGTTACTGATATTTATCCTCCAACAAGTACTCACAACATGGATGATTTTGACATGCTGAACGCGCCCGCGGCTGGAAACGGTGTAGGCTCGGAAGAGGACCCCGCTGCCGCGTTCTTGGCCCAGCAGGAGAGCGAAATCGCGGGGATTGAAAACGACGAAGGCTTCAGCATCCTGGACAGCGGAGAGGTCCCTTCGTCGCTGGTAGACTCCTCCAACGATGGCGCTGTCAATGGAGAGATTCATGTGGAAAGCAATGGTCCATCTGACGCCTATGCAGCAATTTCCAGTGCAGACCGGCTGCAGGCTGAACCTGAAAGCCTACGCAAGTGGAGGGAAGAGCAACGCGAACGGCTGGAGGTGCTAGATGAAAACTCTCGCAAGCAGGAGTCAGAGTGGAAGGAGAAAGCCAAGGTGGAGCTGGAAGAGTGGCATGCCAGGCAGAACGAGCAGCTGGAgaaaaccaaaaccaacaacagGGTGCTGGATGAAGACTTCTACAAGCAGCCCTTCTCTGAGCTCATTGGTTATGTCACACACATTAACCATCCTTGCTACCGCCTAGACCAGGCGGCTGAGGAGGCCATGATTTCGGACCTGGATGAAAATGACCCTGGCACGGAGTGGGAGCGGGTGGCTCGGCTCTGCGACTTCAACCCCAAGTCCAGCAAGCAAGCCAAAGACGTGTCTCGCATGCGCTCCGTCCTCATCTCCCTGAAGCAGTCCCCGCTAGTCCGCTAAGCAGCCAAGGCTGCTCAGGGCGTCATTCCATGTCATCCTCTCTCACCACACACCAACCAACCCAAATGACCACAGTCTCTATTCTAAAGACAAGGGGCTTACATCCCTTCTGCATATCTGTTTGCCCCACCCCctgcccctccctccctccctagtGGAAGGATATAGCCAGTGGTCCTGACCTCATCTATCTCCACCTGGCAGGTCTGTAGAGATTATAGCCTTAAAGCACCAGCTCACCATTTCTTGCCCCCTCAAAGATTTTCATCTGTGTGCATATCTTCCTCAGACCAATCAACACCTTGTTATTCATCTTCCTCATTGTTTTACACACTAAGATCAAGGCCTGTTAGATTGACACCAGGTCTGTGGTGTTGTGTAAAACTTGTGTAAGGGTGGTGAGTTGGGACACTAAAAGGGAAGGGCTGATGTTTGTTTGGGCCTCCAGCTACACTACAACCTGCTTC
>XM_039800710.1
AAGCTTTTTATTGTCGTCCTTCTTCCCGTTGAGCTAGCTAGTCGGTTTCGGTCAACCGCTACACCTGCCCACCGTTACTGATATTTATCCTCCAACAAGTACTCACAACATGGATGATTTTGACATGCTGAACGCGCCCGCGGCTGGAAACGGTGTAGGCTCGGAAGAGGACCCCGCTGCCGCGTTCTTGGCCCAGCAGGAGAGCGAAATCGCGGGGATTGAAAACGACGAAGGCTTCAGCATCCTGGACAGCGGAGAGGTCCCTTCGTCGCTGGTAGACTCCTCCAACGATGGCGCTGTCAATGGAGAGATTCATGTGGAAAGCAATGGTCCATCTGACGCCTATGCAGCAATTTCCAGTGCAGACCGGCTGCAGGCTGAACCTGAAAGCCTACGCAAGTGGAGGGAAGAGCAACGCGAACGGCTGGAGGTGCTAGATGAAAACTCTCGCAAGCAGGAGTCAGAGTGGAAGGAGAAAGCCAAGGTGGAGCTGGAAGAGTGGCATGCCAGGCAGAACGAGCAGCTGGAgaaaaccaaaaccaacaacagGGTGCTGGATGAAGACTTCTACAAGCAGCCCTTCTCTGAGCTCATTGGTTATGTGGCGGCTGAGGAGGCCATGATTTCGGACCTGGATGAAAATGACCCTGGCACGGAGTGGGAGCGGGTGGCTCGGCTCTGCGACTTCAACCCCAAGTCCAGCAAGCAAGCCAAAGACGTGTCTCGCATGCGCTCCGTCCTCATCTCCCTGAAGCAGTCCCCGCTAGTCCGCTAAGCAGCCAAGGCTGCTCAGGGCGTCATTCCATGTCATCCTCTCTCACCACACACCAACCAACCCAAATGACCACAGTCTCTATTCTAAAGACAAGGGGCTTACATCCCTTCTGCATATCTGTTTGCCCCACCCCctgcccctccctccctccctagtGGAAGGATATAGCCAGTGGTCCTGACCTCATCTATCTCCACCTGGCAGGTCTGTAGAGATTATAGCCTTAAAGCACCAGCTCACCATTTCTTGCCCCCTCAAAGATTTTCATCTGTGTGCATATCTTCCTCAGACCAATCAACACCTTGTTATTCATCTTCCTCATTGTTTTACACACTAAGATCAAGGCCTGTTAGATTGACACCAGGTCTGTGGTGTTGTGTAAAACTTGTGTAAGGGTGGTGAGTTGGGACACTAAAAGGGAAGGGCTGATGTTTGTTTGGGCCTCCAGCTACACTACAACCTGCTTC
>XM_039800716.1
AGCTTTTTATTGTCGTCCTTCTTCCCGTTGAGCTAGCTAGTCGGTTTCGGTCAACCGCTACACCTGCCCACCGTTACTGATATTTATCCTCCAACAAGTACTCACAACATGGATGATTTTGACATGCTGAACGCGCCCGCGGCTGGAAACGGTGTAGGCTCGGAAGAGGACCCCGCTGCCGCGTTCTTGGCCCAGCAGGAGAGCGAAATCGCGGGGATTGAAAACGACGAAGGCTTCAGCATCCTGGACAGCGGAGAGGTCCCTTCGTCGCTGGTAGACTCCTCCAACGATGGCGCTGTCAATGGAGAGATTCATGTGGAAAGCAATGGTCCATCTGACGCCTATGCAGCAATTTCCAGTGCAGACCGGCTGCAGGCTGAACCTGAAAGCCTACGCAAGTGGAGGGAAGAGCAACGCGAACGGCTGGAGGTGCTAGATGAAAACTCTCGCAAGCAGGAGTCAGAGTGGAAGGAGAAAGCCAAGGTGGAGCTGGAAGAGTGGCATGCCAGGCAGAACGAGCAGCTGGAgaaaaccaaaaccaacaacagGGCGGCTGAGGAGGCCATGATTTCGGACCTGGATGAAAATGACCCTGGCACGGAGTGGGAGCGGGTGGCTCGGCTCTGCGACTTCAACCCCAAGTCCAGCAAGCAAGCCAAAGACGTGTCTCGCATGCGCTCCGTCCTCATCTCCCTGAAGCAGTCCCCGCTAGTCCGCTAAGCAGCCAAGGCTGCTCAGGGCGTCATTCCATGTCATCCTCTCTCACCACACACCAACCAACCCAAATGACCACAGTCTCTATTCTAAAGACAAGGGGCTTACATCCCTTCTGCATATCTGTTTGCCCCACCCCctgcccctccctccctccctagtGGAAGGATATAGCCAGTGGTCCTGACCTCATCTATCTCCACCTGGCAGGTCTGTAGAGATTATAGCCTTAAAGCACCAGCTCACCATTTCTTGCCCCCTCAAAGATTTTCATCTGTGTGCATATCTTCCTCAGACCAATCAACACCTTGTTATTCATCTTCCTCATTGTTTTACACACTAAGATCAAGGCCTGTTAGATTGACACCAGGTCTGTGGTGTTGTGTAAAACTTGTGTAAGGGTGGTGAGTTGGGACACTAAAAGGGAAGGGCTGATGTTTGTTTGGGCCTCCAGCTACACTACAACCTGCTTC

Function

symbol description
clta Predicted to enable clathrin heavy chain binding activity. Predicted to be involved in clathrin coat assembly and clathrin-dependent endocytosis. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in clathrin-coated pit and cytoplasmic vesicle. Predicted to be part of clathrin vesicle coat. Predicted to be active in plasma membrane; postsynaptic endocytic zone cytoplasmic component; and synaptic vesicle membrane. Orthologous to human CLTA (clathrin light chain A).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030130 clathrin coat of trans-Golgi network vesicle cellular_component
GO:0030132 clathrin coat of coated pit cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K04644 CLTA, LCA; clathrin light chain A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800703.1 True 1278 mRNA 0.53 7 19888376 19899439
XM_039800710.1 False 1242 mRNA 0.53 6 19888376 19899439
XM_039800716.1 False 1187 mRNA 0.53 5 19888376 19899438

Neighbor

gene id symbol gene type direction distance location
nansa nans coding downstream 2725 19879374 ~ 19885651 (-)
slc24a2 LOC104964368 coding downstream 17025 19854617 ~ 19871351 (-)
xpa xpa coding downstream 38602 19844714 ~ 19849774 (-)
LOC120569647 NA coding downstream 124073 19764088 ~ 19764303 (-)
LOC120569645 NA coding downstream 125111 19763050 ~ 19763265 (-)
gne gne,LOC102781855 coding upstream 3241 19902680 ~ 19932408 (-)
tmod1 tmod1 coding upstream 85971 19985410 ~ 20006661 (-)
tdrd7a NA coding upstream 111715 20011154 ~ 20032838 (-)
stra6l LOC104958947 coding upstream 134400 20033839 ~ 20042084 (-)
LOC120565191 LOC103366463,LOC102211221,LOC102302105,LOC101484083 coding upstream 145526 20044965 ~ 20088639 (-)
G6233 NA non-coding downstream 46661 19839154 ~ 19841715 (-)
G6131 NA non-coding downstream 136558 19751601 ~ 19751818 (-)
G6093 NA non-coding downstream 339218 19548778 ~ 19549158 (-)
G6086 NA non-coding downstream 392248 19493882 ~ 19496128 (-)
G6081 pdcd4,LOC104958203 non-coding downstream 400357 19481135 ~ 19488019 (-)
G6242 NA non-coding upstream 17677 19917116 ~ 19920280 (-)
G6264 NA non-coding upstream 282600 20182039 ~ 20182294 (-)
G6269 NA non-coding upstream 296839 20196278 ~ 20203695 (-)
G6297 NA non-coding upstream 845709 20745148 ~ 20745353 (-)
G6387 psmd12 non-coding upstream 1080746 20980185 ~ 20983277 (-)
micu3a micu3,LOC100706756,LOC102779354,LOC101479276 other downstream 91854 19766497 ~ 19796522 (-)
LOC120569510 NA other downstream 122989 19764893 ~ 19765387 (-)
G6084 NA other downstream 342449 19489588 ~ 19545927 (-)
cxcl12b cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533 other downstream 851295 19023216 ~ 19037081 (-)
mcrip2 mcrip2,LOC104963804 other downstream 906058 18971970 ~ 18982318 (-)
spink4 NA other upstream 143324 20042763 ~ 20044726 (-)
LOC120574674 NA other upstream 287842 20187281 ~ 20193338 (-)
LOC120566957 NA other upstream 1663652 21563091 ~ 21569059 (-)
G6592 ube2o,LOC106534564 other upstream 1809101 21708540 ~ 21709812 (-)
LOC120556502 LOC104944681,LOC103364456 other upstream 2429080 22328519 ~ 22335583 (-)

Expression


Co-expression Network