LOC120566146 (LOC107082675,LOC108251143,LOC103383281)


Basic Information

Item Value
gene id LOC120566146
gene name LOC107082675,LOC108251143,LOC103383281
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 2558876 ~ 2570454 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812425.1
CACTCCCTTTCTGGCACATCACACACCTGCAGCCCCACCTCTTTTCCTGCAGACTCTCCCAAAACTTTCCAGAAACCAAACACCCTCCAGGCTCTCCGCTCCAGACTCCAGACTCTTTTCTCCAGACTCCGGACACAGCTGCATCATGTCGGGCATCGCCGCCACCCTGCAGCGCCGCCGGGAGAAGGATCGGGGAATCGGCTCGTGCAGCCAGGCGGTGAAGTACCTGAACCAGGACTACGAGGCTCTGCGGCGGCGCTTCCTCGAGTCCGGAAGCCTCTTTAAGGACGACGCGTTCCCGGCGGAGACCTCTTCTCTGGGCTTCAAAGAGCTGGGCGCGGGCTCCTACAAGATCCGCGGGGTTTCCTGGCAGAGACCGACGGagttgacctctgacccccaGTTCATCGTCTCCGGAGCCTCCAGGACCGACATCTGCCAGGGAGCTCTGGGTGACTGCTGGCTGCTCGCCGCCATTGCCTCTCTGACCCTGAACCAGGAGGTTCTGGCTCGAGTCGTCCCTCATGGACAGAGCTTCAGAAAAGGAGAGTACGCCGGCATCTTCCACTtccagTTCTGGCAGTTTGGGGAGTGGGTGGACGTGGTGATTGACGACCGTCTGCCGGTTAAAGATGGAGAGTTGCTGTTCGTCCACTCGGCCGAGGGGAGGGAGTTCTGGAGCGCTCTGCTGGAGAAAGCCTACGCCAAGTTGAATGGCTGTTACGAGGCTCTGTCTGGAGGATCCACCACTGAGGGTTTCGAGGATTTCACCGGAGGAATCGCCGAGGTCCACGAGCTGAAACGACCCGATGCTCAGCTGTTCCACATCATCCAGAAAGCTCAGAGCCGCGGCTCACTGATGGGCTGCTCCATAGACATCACGAGCTCGTCTGAGTCGGAGGCCGTCACTTCTCAGAAGCTGGTGAAAGGCCATGCCTACTCTGTGACCGGCACAGCTCAGGTGGAGCACCAGGGAGAAACAAAGAAGCTGATCCGGATCAGGAACCCCTGGGGACAGGTGGAGTGGACCGGAGCCTGGAGCGACAACTCGATGCAGTGGCGTCAGATCAGCTCCGAGGACCGCGAGCGTCTGAGTCATCGCTCCGAGGACGGAGAATTCTGGATGTCTTTCACCGACTTCCTGCGACATTACGACCGTCTGGAGATCTGCAACCTGACGCCCGACGCCCTGAGCGACGACGCCGTCTCCAAGTGGGCGTTGTCCAAGTTCGACGGGAGCTGGAGGCGCGGATCCACCGCCGGAGGCTGCAGGAACTACCCAGACACGTTCTGGACCAACCCTCAGTTTGTGATCCAtctggaggaggaagatgacGACCCGGCCGATGGCGAGGTCGGCTGCAGTTTCCTGGTCGGTCTGATCCAGAAGAACCGGCGCCGCGCCCGGAAGCTGGGGGAGGACATGCACACGGTCGGCTTCGCCATCTACCAGGTTCCTGATGAGTTCCGCGATCAGAGGAACGTCCACCTGAATAAGAACTACTTCCTGCGTCACGCCTCAGCCGCTCGCTCCGAGACGTTCATCAACCTGAGGGAGGTGTGCAGCCGCTTCTGTCTGCCGCCCGGAGAATACCTGATCGTCCCGTCTACCTTCGAACCGCACAAGAACGGAGACTTCTGCGTCCGCGTCTTCTCCGAGAAACAGGCCGACTTTCAAGAGATGGACGACCCTGTCGAGAGCAGAGTGGAGACGATTGAGATCGATGAAGACGATGTGGACGATCGGTTCAGAAAACTGTTTGGACAGCTGGCTGGAGGGGACTGTGAGATTTCCTCCTACGAGCTGCAGAAGATCCTCAACAGAGTGGTGACCAAACgttcTGACATTAAGACCAGCGGCTTCAGCATCACAACATGTCGCAACATGGTCAACATGTTGGACAAAGACGGCAGCGGTAAACTGGGTCTGCTGGAGTTTAAAGTGCTGTGGACCAAAATCGAGAGCTACCTGAGTGTTTACCGTCAGAAGGACGTGGATAATTCAGGGACGATGAGCTCCACAGAGATGAGGATGGCTGTGGAGGAAGCTGGTTTCAGTCTGAACAACGCGCTGCATCAGATCCTGGTGGCTCGGTACAGCGAACCAGATCTCACCATCGACTTCGACAACTTTGTGGGCTGTCTGGTTCGCCTGGAGACCATGTTCAACACGTTCTACACGCTGGACAAAGATAAGTCAGGAAGCGTGGAGCTCAGCATGATGGAGTGGCTGAACGTGTCCATGCTGTGAGGAACCAGAACCGGATCAGAGCTGAGATATAGTCCGGGTGCTGACTGAAGATTGTTTACATGTTTATTATTAATCATGAAGGAGAGCGATGTTTTATTACTAAATGTTCCGTTATATACCGGGGTTAAAGTGGGCTGGAACAGCGTTATTAcatcaaacaataaatcaagCAGAACAGAAATAGAAGCCTTGGAGTCAGACTATGAATGAGAAACAGAATGAATAATGAATGGTAGAGAAGGAGGTTCTGCAGAATATTCAGTTATTAAAAGACTCAGTTATTAAAAGA
>XR_005640344.1
CACTCCCTTTCTGGCACATCACACACCTGCAGCCCCACCTCTTTTCCTGCAGACTCTCCCAAAACTTTCCAGAAACCAAACACCCTCCAGGCTCTCCGCTCCAGACTCCAGACTCTTTTCTCCAGACTCCGGACACAGCTGCATCATGTCGGGCATCGCCGCCACCCTGCAGCGCCGCCGGGAGAAGGATCGGGGAATCGGCTCGTGCAGCCAGGCGGTGAAGTACCTGAACCAGGACTACGAGGCTCTGCGGCGGCGCTTCCTCGAGTCCGGAAGCCTCTTTAAGGACGACGCGTTCCCGGCGGAGACCTCTTCTCTGGGCTTCAAAGAGCTGGGCGCGGGCTCCTACAAGATCCGCGGGGTTTCCTGGCAGAGACCGACGGagttgacctctgacccccaGTTCATCGTCTCCGGAGCCTCCAGGACCGACATCTGCCAGGGAGCTCTGGGTGACTGCTGGCTGCTCGCCGCCATTGCCTCTCTGACCCTGAACCAGGAGGTTCTGGCTCGAGTCGTCCCTCATGGACAGAGCTTCAGAAAAGGAGAGTACGCCGGCATCTTCCACTtccagTTCTGGCAGTTTGGGGAGTGGGTGGACGTGGTGATTGACGACCGTCTGCCGGTTAAAGATGGAGAGTTGCTGTTCGTCCACTCGGCCGAGGGGAGGGAGTTCTGGAGCGCTCTGCTGGAGAAAGCCTACGCCAAGTTGAATGGCTGTTACGAGGCTCTGTCTGGAGGATCCACCACTGAGGGTTTCGAGGATTTCACCGGAGGAATCGCCGAGGTCCACGAGCTGAAACGACCCGATGCTCAGCTGTTCCACATCATCCAGAAAGCTCAGAGCCGCGGCTCACTGATGGGCTGCTCCATAGACATCACGAGCTCGTCTGAGTCGGAGGCCGTCACTTCTCAGAAGCTGGTGAAAGGCCATGCCTACTCTGTGACCGGCACAGCTCAGGTGGAGCACCAGGGAGAAACAAAGAAGCTGATCCGGATCAGGAACCCCTGGGGACAGGTGGAGTGGACCGGAGCCTGGAGCGACAACTCGATGCAGTGGCGTCAGATCAGCTCCGAGGACCGCGAGCGTCTGAGTCATCGCTCCGAGGACGGAGAATTCTGGATGTCTTTCACCGACTTCCTGCGACATTACGACCGTCTGGAGATCTGCAACCTGACGCCCGACGCCCTGAGCGACGACGCCGTCTCCAAGTGGGCGTTGTCCAAGTTCGACGGGAGCTGGAGGCGCGGATCCACCGCCGGAGGCTGCAGGAACTACCCAGACACGTTCTGGACCAACCCTCAGTTTGTGATCCAtctggaggaggaagatgacGACCCGGCCGATGGCGAGGTCGGCTGCAGTTTCCTGGTCGGTCTGATCCAGAAGAACCGGCGCCGCGCCCGGAAGCTGGGGGAGGACATGCACACGGTCGGCTTCGCCATCTACCAGGTTCCTGATGAGTTCCGCGATCAGAGGAACGTCCACCTGAATAAGAACTACTTCCTGCGTCACGCCTCAGCCGCTCGCTCCGAGACGTTCATCAACCTGAGGGAGGTGTGCAGCCGCTTCTGTCTGCCGCCCGGAGAATACCTGATCGTCCCGTCTACCTTCGAACCGCACAAGAACGGAGACTTCTGCGTCCGCGTCTTCTCCGAGAAACAGGCCGACTTTCAAGAGATGGACGACCCTGTCGAGAGCAGAGTGGAGACGATTGAGATCGATGAAGACGATGTGGACGATCGGTTCAGAAAACTGTTTGGACAGCTGGCTGGAGGGGACTGTGAGATTTCCTCCTACGAGCTGCAGAAGATCCTCAACAGAGTGGTGACCAAACATCAGATGATTAACGGAGAACTAACTGTAGTTCAGGTGATAAACCAGAGACAGCTGCCCCAGTGGCTGATGGGTAAATAATCTGAGTGTGAAGTCCCTGAACGTGTGTGCAGAAAGACGGCAGCGGTAAACTGGGTCTGCTGGAGTTTAAAGTGCTGTGGACCAAAATCGAGAGCTACCTGAGTGTTTACCGTCAGAAGGACGTGGATAATTCAGGGACGATGAGCTCCACAGAG
>XR_005640345.1
ACTCCCTTTCTGGCACATCACACACCTGCAGCCCCACCTCTTTTCCTGCAGACTCTCCCAAAACTTTCCAGAAACCAAACACCCTCCAGGCTCTCCGCTCCAGACTCCAGACTCTTTTCTCCAGACTCCGGACACAGCTGCATCATGTCGGGCATCGCCGCCACCCTGCAGCGCCGCCGGGAGAAGGATCGGGGAATCGGCTCGTGCAGCCAGGCGGTGAAGTACCTGAACCAGGACTACGAGGCTCTGCGGCGGCGCTTCCTCGAGTCCGGAAGCCTCTTTAAGGACGACGCGTTCCCGGCGGAGACCTCTTCTCTGGGCTTCAAAGAGCTGGGCGCGGGCTCCTACAAGATCCGCGGGGTTTCCTGGCAGAGACCGACGGagttgacctctgacccccaGTTCATCGTCTCCGGAGCCTCCAGGACCGACATCTGCCAGGGAGCTCTGGGTGACTGCTGGCTGCTCGCCGCCATTGCCTCTCTGACCCTGAACCAGGAGGTTCTGGCTCGAGTCGTCCCTCATGGACAGAGCTTCAGAAAAGGAGAGTACGCCGGCATCTTCCACTtccagTTCTGGCAGTTTGGGGAGTGGGTGGACGTGGTGATTGACGACCGTCTGCCGGTTAAAGATGGAGAGTTGCTGTTCGTCCACTCGGCCGAGGGGAGGGAGTTCTGGAGCGCTCTGCTGGAGAAAGCCTACGCCAAGTTGAATGGCTGTTACGAGGCTCTGTCTGGAGGATCCACCACTGAGGGTTTCGAGGATTTCACCGGAGGAATCGCCGAGGTCCACGAGCTGAAACGACCCGATGCTCAGCTGTTCCACATCATCCAGAAAGCTCAGAGCCGCGGCTCACTGATGGGCTGCTCCATAGACATCACGAGCTCGTCTGAGTCGGAGGCCGTCACTTCTCAGAAGCTGGTGAAAGGCCATGCCTACTCTGTGACCGGCACAGCTCAGGTGGAGCACCAGGGAGAAACAAAGAAGCTGATCCGGATCAGGAACCCCTGGGGACAGGTGGAGTGGACCGGAGCCTGGAGCGACAACTCGATGCAGTGGCGTCAGATCAGCTCCGAGGACCGCGAGCGTCTGAGTCATCGCTCCGAGGACGGAGAATTCTGGATGTCTTTCACCGACTTCCTGCGACATTACGACCGTCTGGAGATCTGCAACCTGACGCCCGACGCCCTGAGCGACGACGCCGTCTCCAAGTGGGCGTTGTCCAAGTTCGACGGGAGCTGGAGGCGCGGATCCACCGCCGGAGGCTGCAGGAACTACCCAGACACGTTCTGGACCAACCCTCAGTTTGTGATCCAtctggaggaggaagatgacGACCCGGCCGATGGCGAGGTCGGCTGCAGTTTCCTGGTCGGTCTGATCCAGAAGAACCGGCGCCGCGCCCGGAAGCTGGGGGAGGACATGCACACGGTCGGCTTCGCCATCTACCAGGTTCCTGATGAGTTCCGCGATCAGAGGAACGTCCACCTGAATAAGAACTACTTCCTGCGTCACGCCTCAGCCGCTCGCTCCGAGACGTTCATCAACCTGAGGGAGGTGTGCAGCCGCTTCTGTCTGCCGCCCGGAGAATACCTGATCGTCCCGTCTACCTTCGAACCGCACAAGAACGGAGACTTCTGCGTCCGCGTCTTCTCCGAGAAACAGGCCGACTTTCAAGAGATGGACGACCCTGTCGAGAGCAGAGTGGAGACGATTGAGATCGATGAAGACGATGTGGACGATCGGTTCAGAAAACTGTTTGGACAGCTGGCTGGAGGGGACTGTGAGATTTCCTCCTACGAGCTGCAGAAGATCCTCAACAGAGTGGTGACCAAACTTCAGGTGATAAACCAGAGACAGCTGCCCCAGTGGCTGATGGGTAAATAATCTGAGTGTGAAGTCCCTGAACGTGTGTGCAGAAAGACGGCAGCGGTAAACTGGGTCTGCTGGAGTTTAAAGTGCTGTGGACCAAAATCGAGAGCTACCTGAGTGTTTACCGTCAGAAGGACGTGGATAATTCAGGGACGATGAGCTCCACAGAG

Function

NR:

description
PREDICTED: calpain-2 catalytic subunit-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K03853 CAPN2; calpain-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812425.1 True 2540 mRNA 0.56 21 2558876 2570454
XR_005640344.1 False 2073 transcript 0.58 17 2558876 2568358
XR_005640345.1 False 2042 transcript 0.59 17 2558877 2568358

Neighbor

gene id symbol gene type direction distance location
LOC120561353 LOC102083160 coding upstream 164589 2362732 ~ 2394287 (+)
mrps28 mrps28 coding upstream 291253 2266855 ~ 2267623 (+)
mtif2 mtif2 coding upstream 311942 2228163 ~ 2246934 (+)
LOC120566049 NA coding upstream 339023 2211994 ~ 2219853 (+)
LOC120566037 NA coding upstream 353976 2202527 ~ 2204900 (+)
LOC120566159 NA coding downstream 2526 2572980 ~ 2584262 (+)
LOC120561808 srf,LOC103372093 coding downstream 288050 2858504 ~ 2881120 (+)
eif4a3 eif4a3 coding downstream 312469 2882923 ~ 2891005 (+)
tmem178 tmem178a,LOC102307988 coding downstream 367643 2938097 ~ 2977429 (+)
LOC120557776 NA coding downstream 539137 3109591 ~ 3128050 (+)
G731 NA non-coding upstream 173332 2385155 ~ 2385544 (+)
G720 NA non-coding upstream 178726 2325116 ~ 2380150 (+)
G725 NA non-coding upstream 197037 2347168 ~ 2361839 (+)
G724 NA non-coding upstream 197543 2354934 ~ 2361333 (+)
G701 NA non-coding upstream 304542 2252046 ~ 2254334 (+)
G857 NA non-coding downstream 838 2571292 ~ 2571500 (+)
G865 NA non-coding downstream 18267 2588721 ~ 2589076 (+)
LOC120566193 NA non-coding downstream 87948 2658402 ~ 2669755 (+)
G886 NA non-coding downstream 123773 2694227 ~ 2695390 (+)
G884 NA non-coding downstream 127075 2697529 ~ 2700077 (+)
G714 LOC103375176,LOC105920176,LOC100706186,LOC101468385 other upstream 212828 2307285 ~ 2346048 (+)
LOC120566000 NA other upstream 591621 1946145 ~ 1967255 (+)
G369 NA other upstream 639052 1582038 ~ 1919824 (+)
G363 LOC104946033,LOC104961227 other upstream 679330 1593822 ~ 1879546 (+)
LOC120566853 snrpb2,LOC102212107,LOC102301910,LOC101474810 other upstream 722416 1746571 ~ 1836460 (+)
G879 NA other downstream 55789 2626243 ~ 2700975 (+)
LOC120567073 sos1 other downstream 424575 2995029 ~ 3080190 (+)
LOC120567079 NA other downstream 497944 3068398 ~ 3071473 (+)
LOC120557752 LOC104935435,LOC108250455,LOC106524354,LOC101471560,LOC103371946,LOC102291612 other downstream 557635 3128089 ~ 3157138 (+)
dzank1 NA other downstream 605147 3175601 ~ 3259758 (+)

Expression


Co-expression Network