LOC120564712 (LOC108250350,LOC108250755)


Basic Information

Item Value
gene id LOC120564712
gene name LOC108250350,LOC108250755
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 40472848 ~ 40502827 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU122815
AGCCTCTGATATCTACAGtTATGGTATACTACTATGGTCCATTGTCACAGGGAAACAACCATATGGAAATGCGAAGCCCACCAGAGTGCAACTTCTCATCCCGGAGGGACAGCGTCCACTGCTGGACGATATCAGGGGCCAGGCTGCGGGGTTGGCAGAGTTGACAGGACTGATGAAGAGATGCTGGGACAATAAACCCAAAGAAAGGCC
>TU122818
GGTCAGAGGGTTTGctgacccacagaaggaggagtacttcaggaagagattcagagatgaggagcaggccagcagaattatctcccacatcaagacatcacgaagcctccacatcatgtgccacatcccagtcttctgctggatcactgctacagttctggaggatgtgttgaagaccagagagggaggagagctgcccaagaccctgactgagatgtacatccacttcctggtggt
>XM_039809903.1
CTGGCTGGTTTGATGAGTTGATGGAACAAGTGGCGAATAGAAGGGTCCTGTTTACTCAGTGAACTATGGAAATGTGTGTTGATGACTCCAGCCTGGAGCGCTGGGAGGTGATTGGCTCTGGGGGTTTCGGACAAATCTACAAAGCCAGGCATTGTCGGTGGGCCTGTGATGTGGCCATTAAACTGCTTCGTCATGACGACGGgacCAATGCGTCTTTGCTACGTGAGATCGACATGATGCGCCAGGCGAGCAGCCCGCATGTTATTCGCGTCCGAGGGATCTTCAAGGGTCGACCGCCCCACTCTGGCCCATCAACGCAGCTTGGCGTGGTAATGGAGCTCATGGAGAGAGGATCACTGGCCACCCTACAGGAGGCCTTGAGTGAAACTCCACCACCCTGGCCGCTAGTCTTCAGACTGGCTCACCAAGTGGCTCTGGGTATAAACTTCCTCCACAGTCTGCCCCATCCCGTGCTCCACCTGGACCTGAAGCCCCCCAATGTGCTGCTGGACGACTCTCTCAATGCaaagCTTACAGATTTTGGCCTTGCCCGGATTTCCTGCAGCGTCTCACGGGTTTCCAAGAAGGATgatggagagggaggggggacgGTCAACTACATGCCACCGGAGGCATTTGAATTATTGTACAAACCCAACCGAGCCTCTGATATCTACAGtTATGGTATACTACTATGGTCCATTGTCACAGGGAAACAACCATATGGAAATGCGAAGCCCACCAGAGTGCAACTTCTCATCCCGGAGGGACAGCGTCCACTGCTGGACGATATCAGGGGCCAGGCTGCGGGGTTGGCAGAGTTGACAGGACTGATGAAGAGATGCTGGGACAATAAACCCAAAGAAAGGCCCCCTGCCCTTGAGTGTACAACTGAGACAGAAGAACTCTATAAGATGCACAAACATGCAATTAATGACGCTGTCCATGAAGTGCTAAAGAAACTGGACCAAAAGGAAGAAGCAGGAATGACAGAGTATAAAACAATCGAACCAATGAGCGCCGCCAGGGAACTAACGATTTTCCAATCAGCGCCATTGGCGGGACTAACACAGATGTCAAGATGTCCAGCATTTGTTTACATAGGTGAGACTCTTGACTCTTCTTCAAAGTGCCAGCGAAAACTCAAATCCAACCTACAAAAAAGGTTCTactgtgtgtttgaggggattgctaaagcaggaaactCAACAGTTCTGAATCAGATGTACACACGGCTCTACGTCAGAAAGGGAGGGACTACAGAGGTCAATGATGAACATGAGGCCAGACAAATTGAAACAGCATCTtggaaaccagacagaccagaaacaacaatcagacaagaagacatctttaaagcctCGAATGAAAGAGATGAACCGATCAGGACAGTGATGACAATGGGAGTGGCTGGCattgggaaaacagtcttaacacagaagttcactctggactgggctgaagacaaagccaatcaggacatccagttcacatttccattcactttcaaagagctgaatgtgctgaaagagaaaaagtacagcttggtggaacttgttcatCACTTCTTTAGTATTAcaaaagaagcaggaatctgcagcTTTGAAGAGTTCCAGGTtttgttcatctttgacggtctcGATGAGTGTAGAtttcctctggacttcctcaacactgagatcctgactgatgtaacagagtccacctcagtgaatgtgctgctgacaaacctcatcagggggaaactgcttccctctgctcgcctctggataaccacacgacctgcagcagccaatcagatccctcctgagtgtgttgacatAGTGACCGAGGTCAGAGGGTTTGctgacccacagaaggaggagtacttcaggaagagattcagagatgaggagcaggccagcagaattatctcccacatcaagacatcacgaagcctccacatcatgtgccacatcccagtcttctgctggatcactgctacagttctggaggatgtgttgaagaccagagagggaggagagctgcccaagaccctgactgagatgtacatccacttcctggtggttcagtccaaactGAAGAATGTCAAGTACGACGGAGGAGCTGAGACAGATCCACACTGGAGTCTAGAGAGCAGGAAGATGATtgagtctctgggaaaactggcttttgagcagcttcAGAGAGGCAACCTGATattctatgaatcagacctgacagagtgtggcatcaatatcagagcagcctcagtgtactcaggagtgttcacacagatctttaaagaggagagaggactgtaccaggacaaggtgttcaccttcatccatctgagtgttcaggagtttctggcagctcttcatgtccatctgacattcacCAACTCTGGTGTGAATCTGCTGCTAAAAGCAAAATGGTGGTCTAATCCATTTAAAGACAGATCTACACCGACACATCtctaccagagtgctgtggacatggccttacagagtccaaatggacacctggacttgttcctccgcttcctcctgggtctttcactggAGACCAATCAGACTCTCCTACGAGGTCTGATGACAAAAAGAGGAAGTACTTCACAGACAAATCAGGAAACAGTCCAatacatcaagaagaagatcaaTGAGAAACTATCTccagagagaagcatcaatctgtttcactgtctgaatgaactgaatgatcatTCTCTGGTGGAGGAGATCCAACAGTACCTCAGatcaggaagtctctccacagataaactttctcctgctcagtggtcagctctggtcttcatcttactgtcatcagaaaaacatttggatgtgtttgacctgaatgaatactctgcttcagaggaggctATTCTGAGGCTGCTACCcgtggtcaaagcctccaacaaagctctGTTAACTAGCTGTAACAtctcagagagaagctgtgaagctctgtcctcagttctcagctccccgtcccctagtctgagagagctggaccttaGTAACAACGACCTGCAGGATTCGGGAGTGAAGCTGCTGTCTGCTGGACTGGAGAATCAACTCTGTACACTTGAAACTCTCAGGCTGACTGGCTGTAAACTATCAGACGGGAGCTGTGAAGcgctgtcctcagttctcagctcccagtcctttAGTCTGAGAGAGTtagacctgagtaacaacgacCTGCAggactcaggagtgaagcttCTGTCTGCTGGACTTCAGAGTCCATACTGTACATTGGAAAATCTTAGgTTAACTGGCTGTAACCTCTCAGAGAGCAGCTGTgcagctctgtcctcagttctcagctcccagtcctctagtctgaaaGCGTtagacctgagtaacaacgacCTGCACGATTCAGGAGTGAAGATACTGTCTGCTGGACTTCAGAGTCCATACTGTACATTGGAAAATCTCAGgttgagtggctgtaacctgtcagagagaagctgtgaagctctgtcctcagttctcagctcccagtcctctagtctgagagagctggacctgagtaacaacgaactgcaggattcaggagggaagctgatgTCTGCTGGACTTGAGAGCGCATACTGTACACTGGAATCTCTCAGtctgtcaggctgtctgatcacAGGAGAATGCTGTgcttctctggcctcagctctgagcgccaacccctcccatctgagagcgctggacctgagctacaatcatccaggagagTCAGCCGTGAAGCTGCTGTCTACTGGACTGGAGAATCCACactggagactggacactctcagGGTGGACCATGGTGGAGAGCAAAGGTTAAAACCTGGCCTGAAGAAGTaTTTCTGTGAACTCatagtggacacaaacacagtgaacagaaacCTGTCTgaaaacaacaggaaggtgacatatgtggaggaggagcagccatATCCAGTTCATCCAGAAAGGTTTGACTTCTGgaaacagctgctgtgtagaaatggtctgactggtcgctgttactgggaggtcgagTGGAGAGGAAGAGTTCGCGTAGCAGTGAGTTACAAAGGAGTCACCAAGAGAGGACCCAGTGTTGACTGTATGTTTGGAGTGAATTATCGGTCCTGGAGTCTGAATTGCTCTGATGATGGTTACTCTGTCTGTCACAAGAACAGAGAAAaagtccttccttccttctcctctgtctctgtttctcacagagtagcagtgtatgtggattGTCCTGCTGgcactctgtccttctacacagtctcatctgaccaactgatccacctccacaccttcaacaccacatttaCTGAACCTCTTTATCCAGGATTTGGGTTCAGGTTGAAGTCatatggttcctcagtgtctctttGTTCTCCGTAGGTGGGAGACAACTACCAGTCCTGTGTTAAATGTTGGAGGTGGACATAGAAAAAGGTTGTTGTTGAACTCGAAAacttcttttaaactgaccgttgTTGATCTAAACAGggatggaagaagtatttagatcctttacttaaataaaagtactaataccacactgttaatCTGTTACaattaaaagtcctgcattgaaattgTAACTTAAGTATAACTACGTAAggaatcaggaaaatgtactttaagtattaaaagtaaaagttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122815 False 210 lncRNA 0.51 3 40479857 40492323
TU122818 False 237 lncRNA 0.52 1 40495254 40495490
XM_039809903.1 True 4629 mRNA 0.48 17 40472848 40502827

Neighbor

gene id symbol gene type direction distance location
LOC120564785 NA coding upstream 58368 40402108 ~ 40414480 (+)
LOC120564733 NA coding upstream 71897 40376300 ~ 40400951 (+)
dnajc24 dnajc24 coding upstream 195653 40270523 ~ 40277195 (+)
LOC120564391 NA coding upstream 497868 39973618 ~ 39974980 (+)
ric8a ric8a coding upstream 509440 39944716 ~ 39963408 (+)
si:dkey-12e7.1 LOC104959053,LOC107389248,LOC106903666,LOC100708592,LOC101482187 coding downstream 46421 40549248 ~ 40557864 (+)
anpepa NA coding downstream 56464 40559291 ~ 40586148 (+)
ldhd ldhd coding downstream 110689 40613516 ~ 40633735 (+)
znrf1 znrf1 coding downstream 133298 40636125 ~ 40700282 (+)
ndrg4 ndrg4,LOC102790713 coding downstream 227932 40730759 ~ 40802151 (+)
G91230 NA non-coding upstream 168528 40303864 ~ 40304320 (+)
G91229 NA non-coding upstream 169061 40303571 ~ 40303787 (+)
G91218 NA non-coding upstream 192983 40279222 ~ 40279865 (+)
G91188 NA non-coding upstream 275811 40195124 ~ 40197037 (+)
G91186 NA non-coding upstream 279558 40192792 ~ 40193290 (+)
G91280 NA non-coding downstream 156 40502983 ~ 40503194 (+)
G91284 NA non-coding downstream 4230 40507057 ~ 40507294 (+)
G91285 NA non-coding downstream 5311 40508138 ~ 40508708 (+)
G91286 NA non-coding downstream 5905 40508732 ~ 40509348 (+)
G91288 NA non-coding downstream 15538 40518365 ~ 40519787 (+)
LOC120563436 NA other upstream 598671 39871690 ~ 39874177 (+)
G90693 NA other upstream 1592946 38877050 ~ 38879902 (+)
G90686 NA other upstream 1792761 38658366 ~ 38680087 (+)
G90583 NA other upstream 2417284 38054509 ~ 38055564 (+)
wfdc1 wfdc1,LOC102778323 other upstream 2438154 38022377 ~ 38034694 (+)
gins3 gins3 other downstream 200354 40703181 ~ 40710433 (+)
smpd3 smpd3,LOC102789354 other downstream 364894 40867721 ~ 40950165 (+)
LOC120563418 LOC101477895,LOC102304763,LOC106675229,LOC102199463 other downstream 450679 40953506 ~ 40955947 (+)
exoc3l1 LOC106535935,LOC103369297,LOC103466291,LOC104962074,LOC101469518 other downstream 551563 41054390 ~ 41078222 (+)
LOC120564397 NA other downstream 962837 41465664 ~ 41467325 (+)

Expression


Co-expression Network