exoc3l1 (LOC106535935,LOC103369297,LOC103466291,LOC104962074,LOC101469518)


Basic Information

Item Value
gene id exoc3l1
gene name LOC106535935,LOC103369297,LOC103466291,LOC104962074,LOC101469518
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 41054390 ~ 41078222 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU123017
gcatgtttctaacagttgcgtgaccagagacataacaacctcctggtaaataatggagatgtatttgaaagatggagacagcttagagcccaaaaggacgcagagttggcttattttctcctgaaccgctagagtacccgagttggttactcgcaaaaacaattgagacacagccagtaaagtgatcccgactggttcCGGCTAcgcgccatgctaaccctgctacctgttaacgttaccggagacccaggcaagcagcccacggctgtttacagcgtgtagcctcgtcagcggctggagccgataacgGTAAGGAGCTGTGGGCGGTGGTGAGCAGTGCTCTGGCTCTGGCCCGACAAAACCCAACCCCATTTGTGTCGGCGGTGAGGATTGTGGAGCGGGAGGAGGCCCTGGACCAAGCTTTCCTGGAGGAGAGAGTGGGGAGCAGAGGCAACACCAGGCCCCTGCCCCCAGGACGACCTCGCTGCTGGAGAGCATGCTTCTTCCAGGTACTAGAGGAAGCAGTTTCTGCGCGTTTCCGCAGTGTTTCCTACCTGCACACGCGTGGTCCGGGTCTAGCAGGCCACCTCTCTGCTCTCCAACACGGTATCATGGCTGACCTGGCCACCGTACGCCACCTGCTGGAGCACTGTGTCCCCCCACACTACCAGCTAACAGGAGCCTACCTGAGGGCCAGCCACCGCTGTTTACATTCTCACCTGGCACAGGTCAGTGATAGTGTGAGAGAAATACAA
>XM_039809989.1
TCAGCAGAGGATGTgtctgggagagagagagtgtgtgtgagggaaAAGAGGAAAGCCGTCAGTAGAATGGATATGTGCCCTCTCTCCTCCATgcgttctcctcctcctcctcctctttcttctttgtctCATCTCATCTCTTGGCCTTCTCCTTTGCCAGCGTTGCACCCTGGGCACCCTCAGTACCGGCCCTCGGGGAAAAGGAGACTCGTCGGTTGGACGGGCAGCTGAAAACTGAACTTCAATGTCTGCAGGGGATCAGAAGAGTGGTGGGGACAAGCCAGAAGACACGGTGCCAGTGGCTAAGGTATGGCCAGAGGTGGAGAGGGCCGAGTGTTTGGCCCGCGGTGCTGCTCTGAAGTGGGCTTCAGGTGTTTTCTGTCGGCCTGAGCATCTGGAACGACTGAGCCAGTACaagaagagagagagtcagaggacTGCCTCCATACACACCAGACTCAAGTCCATGGTCCAGTCGTACTTGGAGGGGGTAGGCTGGGGTCTGGAGCAACTCCGGGAGGCCAGGGCCGAGCTGAAGGAGGTGTCACATGCTTTGAAGAAAGCAGGACTGGAGTCCAATCGAAACGCAGAGGGGGTGAAGTCTCTGGAGAGGCTGAGAGAAGTGTCTGTCAACCACCGTCAGCTCCTCGCTGCTGTCAGCAACCTGCCACGGCTTTACTCTGTGCGTAGCATGGTGCTGGAGACGGAGCGTCTAGTGGAGTCCCGGCGGCTCCTGGAGGCCCACGCCCGGCTGATGGATCTGGAGCGCTGGCAGGACGACATCCTCTGGCAGCTCCACGGGGCTAATGGGATGGCAGGAAGTGCACTCAGTAAAGAGGACCAGGAGCTGGTGGCCAAATATTTCTCTGGTGTCGGGCAGCTGGTGGACGCCCTGGGTAAGGAGCTGTGGGCGGTGGTGAGCAGTGCTCTGGCTCTGGCCCGACAAAACCCAACCCCATTTGTGTCGGCGGTGAGGATTGTGGAGCGGGAGGAGGCCCTGGACCAAGCTTTCCTGGAGGAGAGAGTGGGGAGCAGAGGCAACACCAGGCCCCTGCCCCCAGGACGACCTCGCTGCTGGAGAGCATGCTTCTTCCAGGTACTAGAGGAAGCAGTTTCTGCGCGTTTCCGCAGTGTTTCCTACCTGCACACGCGTGGTCCGGGTCTAGCAGGCCACCTCTCTGCTCTCCAACACGGTATCATGGCTGACCTGGCCACCGTACGCCACCTGCTGGAGCACTGTGTCCCCCCACACTACCAGCTAACAGGAGCCTACCTGAGGGCCAGCCACCGCTGTTTACATTCTCACCTGGCACAGGTCAaaaagtggcagttgGAAGGACTTGAACTTATCGCTGGCATGCCAGTCTGACTGTCTTGATTTGGCAGCCCAGACATGATGGGTCACCCAGAGCTGGTGACCGAGATGGAGAAAGTAGAACTGGGACCTCTCATCTCCACCGAGGGACTGGAGCAGCTGCAGAACAAATATGTACAAAGTGTTCGGAAGAGTGTATCCGAGTGGATGCACAAAGCGTTACAGGTGGAGCTGCAAGACTGGCAGAGAGACCAGGAGCCAGATACAGACCATGAAGGTTTCTACCAAACCAGCCTGCCCACTATTATCACACAGATGCTGGAGGAGAATGCCCGGGTGGCTCTGATGATCGGAGAGTCTCTACGAGACCAGACAATACAGATGGGTCTGTATGAGATGGAGAACCTCCTAAACAGGTTTCGAGAAGCCCTGGTCGAATTTGGGAAGGAGCATCGCAGGAAttcaagcaacaacaaaaacaagtacTACCTCCACTACCTGCTGGCCTCCATCAGCAACTGCATCATCCTCAAGAAGTCCACAGagagcctgcagcagcagcagtcgtCCCCGTCGGTGGGACAGTTATCTCGCACTCCTCCCAACCCTCTGGCAGCTCTGGACCGGGCAGTGAGACGGGCATGTCGCCTGGTGATGGATCACCTCCTGCTGGACCTTCAGCCTTTCCTCCCAGGCCTGCTGACCCGACCCTGGCTGGTACAGGGAGACCCCACCCCAAAACTGTGCTGCGTGCTGGAGCGTCACCTGGAGCTGTACGGCCGCGTTCGACCGCCCTGCAGACAGCGTCTGCAGGAGGAGGCCCAGTGGCTGATGGTGGTGGAGTACGTCAGGGCTCTGATGCAGAAGAGGCTGGTGTGTCGCAGCGCCGAGGAGAGGAGGCACCTCGCCCAGCAGATGGTTCAGGACGACCAGCAGTTTCGAGAAATCCTCCACGGCCTGGAAGGTGAAGGGTCAGTACCTGAAGTGAATCCCCTGGCCTTACTACTCGTCCTGGCTGACTTCATCCGACTGAAAGACCCCGGCATGCTCACTCTGGAAGTTTCTGGACTCGCAGCCAAATACCCTGACATCGGTGAAGAACATGTGTCTGTACTGCTGGACATCCGTGGTGATGTCTCCAGGGACATCAGAGGGTCTGTACTGGACTTGCTGGAGCAGAGCGCCCCCCCTCTGCCTGCAGGATATCGGCCCATCTTCACTGACATCCTGGTGCCTCCCTCCACCATGGCCTTCTGTCTGCCCACTGCCAAGTGTGCATGACAGGGACACAAACTGTGGCCTAAACTCACATTAAATTCAGGGTGGATCTGGTTCTCAGGCAGATCTTTAAGCCAGGTGTCAATAGCTCGTCTTTACACTAAAATATGCTGTAGGGCtaggtatcgttcaaaaatgttcaataccggaaccgataccaataccgtgacttagATACCGGTTGCTAAAccatacttttttcgatactaattttataaaacaaaaataaattacaacattacggcacaaatctttttattaatttccagctcctactacgtga

Function

NR:

description
exocyst complex component 3-like protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123017 False 755 lncRNA 0.56 4 41061426 41064286
XM_039809989.1 True 2876 mRNA 0.56 16 41054390 41078222

Neighbor

gene id symbol gene type direction distance location
si:dkey-30c15.10 LOC103379919 coding upstream 3567 41027281 ~ 41050823 (+)
LOC120564750 LOC103379930,LOC101477230,LOC103369301 coding upstream 37367 40960853 ~ 41017023 (+)
si:ch211-194m7.4 LOC106675224 coding upstream 224504 40819559 ~ 40829886 (+)
ndrg4 ndrg4,LOC102790713 coding upstream 252239 40730759 ~ 40802151 (+)
znrf1 znrf1 coding upstream 354108 40636125 ~ 40700282 (+)
prmt7 prmt7 coding downstream 2939 41081161 ~ 41096714 (+)
coq9 coq9 coding downstream 29553 41107775 ~ 41116725 (+)
polr2c polr2c coding downstream 39543 41117765 ~ 41122654 (+)
wwp2 wwp2 coding downstream 61417 41139639 ~ 41194448 (+)
adat1 NA coding downstream 118237 41196459 ~ 41209096 (+)
G91383 NA non-coding upstream 193502 40843078 ~ 40860888 (+)
G91363 NA non-coding upstream 326972 40727146 ~ 40727418 (+)
G91358 NA non-coding upstream 341436 40712744 ~ 40712954 (+)
G91292 LOC107389246,LOC100694841 non-coding upstream 521173 40526743 ~ 40533217 (+)
G91288 NA non-coding upstream 534603 40518365 ~ 40519787 (+)
G91451 NA non-coding downstream 132282 41210504 ~ 41211799 (+)
G91465 NA non-coding downstream 260748 41338970 ~ 41339360 (+)
G91614 NA non-coding downstream 486861 41565083 ~ 41566409 (+)
G91625 NA non-coding downstream 510420 41588642 ~ 41676049 (+)
G91641 NA non-coding downstream 663963 41742185 ~ 41745030 (+)
LOC120563418 LOC101477895,LOC102304763,LOC106675229,LOC102199463 other upstream 98443 40953506 ~ 40955947 (+)
smpd3 smpd3,LOC102789354 other upstream 104225 40867721 ~ 40950165 (+)
gins3 gins3 other upstream 343957 40703181 ~ 40710433 (+)
LOC120564712 LOC108250350,LOC108250755 other upstream 551563 40472848 ~ 40502827 (+)
LOC120563436 NA other upstream 1180213 39871690 ~ 39874177 (+)
LOC120564397 NA other downstream 387442 41465664 ~ 41467325 (+)
vps9d1 vps9d1 other downstream 391021 41469243 ~ 41496536 (+)
plcg2 plcg2 other downstream 546891 41625113 ~ 41667528 (+)
G91634 NA other downstream 614302 41692524 ~ 41732835 (+)
zfpm1 zfpm1 other downstream 796996 41875218 ~ 42014502 (+)

Expression


Co-expression Network