vps4a (vps4a,LOC106939979)


Basic Information

Item Value
gene id vps4a
gene name vps4a,LOC106939979
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 41329242 ~ 41341893 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807966.1
CTCCCACTTTACCATTCGTCAAGTTATTTAGCCGAAAAATGGGAATTTTATTTAGCGAAGATCCTATCCTTTAAATATATTCTTGATTAGCTTCGTGAGTATTTGTATTCTGTCATTTTTAGGTCAAAcgcttgtgttttattttttaaatttttaaccGGAACCtattgttgttggttttgttgggTCGAGGCAGAGCTGTCAtactaagctagctagctaacgtactagccattgttttgtcatgtcaagAACAGTCGGTCCCCTCACAACACAGGGCTGGTAACGAGTTCATATCTTCACATATCCGCCTGTGGGTCAGAGGATAGAAGTCTGGGTGGAGAGCACAAGAGTGAGATGAAATGACAACGTCAACATTACagAAAGCGATTGATCTTGTGACCAAAGCCACAGAGGAAGACAAGGCAAAGAATTATGAGGAGGCCTTGCGACTGTACCAGCATGCTGTGGAATATTTCCTACATGCTATCAAATaTGAGGCCCACAGCGACAAGGCAAAGGAGAGTATACGAGCAAAGTGTATGCAGTACCTGGACCGAGCGGAAAAACTTAAAGACTAtctgaaaaataaagacaaacagGGCAAGAAGCCTGTCAAGGAAGCCCAGAGCAATGACAAGAGTGATAGTGACAGCGAGGGTGAAAatccagagaagaagaaactgCAGGAGCAACTTATGGgTGCCATTGTAATGGAGAAGCCCAATGTCAGGTGGAACGATGTGGCTGGACTGGAGGGAGCTAAGGAAGCTCTGAAGGAAGCTGTCATCCTGCCCATCAAATTCCCTCACCTCTTTACAGGCAAGCGGACTCCGTGGAGAGGCATCCTGCTGTTTGGACCCCCAGGGACCGGGAAGTCCTACCTGGCTAAGGCCGTGGCCACCGAGGCCAATAACTCCACCttcttctctgtctcctcctcagaCCTCATGTCCAAGTGGCTGGGAGAGAGCGAGAAGCTGGTGAAGAACTTATTTGACCTGGCTCGCCAGCACAAACCCTCAATCATCTTCATCGATGAGGTGGACTCGCTGTGCGGCTCCAGGAACGAGAACGAGAGTGAGGCCGCCCGCCGCATCAAGACCGAGTTCTTGGTCCAGATGCAGGGTGTGGGAAACAACAACGATGGCATTCTGGTGCTGGGGGCCACCAACATCCCCTGGGTGCTCGACGCCGCCATCCGCAGAAGATTTGAGAAGCGTATCTACATCCCTCTGCCGGAGGAGCCAGCTCGGGCTCAGATGTTTCGTCTTCATCTGGGCAACACGCCACGTAGCCTGAGCGAGGCTGACCTGCGGCAGCTCGCCCACAAAACGGACGGCTACTCCGGCGCCGACATCAGTATCATCGTCCGGACCGCTCTCATGCAGCCTGTTAGGAAGGTCCAGTCTGCCACCCACTTCAAAAAGGTTCGTGGTCCATCCCGAAGCAACAACCAGTTGATGGTGGACGACCTCTTGACTCCGTGTTCCCCTGGTGACCCTGGAGCCATAGAGATGACTTGGATGGATGTGCCGACTGATAAGCTACTGGAGCCCATAGTCTGCATGTCGGACATGCTGCGCTCTCTGTCCACCACCCGTCCCACAGTCAACACTGAAGATCTCCTGAAAGTCAAGAAGTTCACAGACGACTTTGGGATGGAGGGCTGAGAGACGAGAAGGATCAGACTACTGCTCCCAACAACACTCATGACCCCCACCACCACAACTACTGCTGTACCATCCTGTAGGCTTTCTTCTCTCAGCTCACGTCTTGCTTCTACTCATCCAAGGAGGAAGTTGACCAAATGCTACAATAGAAAATCTTGGTGTGATTTGGTAGTTGGACAATAGAGCCCATGCCTTTCTCCCATTTCCAGACAATGTTCCATTACAAAGTAGCCACTACAGTGTATTCACTTCGACAACTTTTTTATCTAACCTGCATTGACGTGAGGAGAGTAGTGTTTGTCCCTCTCTGAGCCGATTCTATCTGACTGAAggactgtacttttttttttttttttgcctgtgtGCACTTTGCTTTGAAGGACAGTGACATTTGAAGAAGATAGTTCTCCTGCCAGGCATGCAAGTGTGTGAATGTATCTAAgtgtttttatgaaaattgtGTGTCTTAATGTTAATGTCTATAAGTTGAGAGTTAAATTAATGAATCATCACTGCCTCAGTGTTCCTCTACAGCTCTTTGTGTGTCAGCATCAGGCCTGTTTCTCTGTGCTCGCAGCAGTCTGAGTGAGGCATTTATCTTCCATATTTACAGTCAAGAGATGTGCTTGATTGAGAGCCAAACACCACATTTCTTCAAtccaaaaaaacttgaaaaatatgtatttcaGTCATATCCTGTgatcttcctcagcagatgTTTGCTCACTTGTCATGGTATAGTAAATGTTCCGTTGTTTCTGTCAGGACTTCTCATCCATGTTAGCTTGAAATGTGAGCTTAAAGTTCACACTTGACCATGGAAACAGCCATTGTCTGGAGCTTTCGATTATATCGCATGATCTTCATCATCGcagttatatactgtatgtatataacTTGGTTTTATGTGATATGATCGAACGCTCATACACCGTTTTCTCAAATGCTGTTTCTAagttcaagaatgaactttgaaCCTTGGCTCCAGTTGCTCTATTTAAATCAGCGCAAATTATTTTCTGCACTCCATTTCCCAGAACACACCTGTCTGAGTGTGATCCGTACTGTGACGTCTTCCCTCTTGGTTTTATTGCAGTTTATGTTGCAGTCTGTTCTGCAGTAATTTGGGCAATGCTGAGCATAAATACTCTTCCTGTTAAAGAAAATCAATCAAGCACATCTCTTtaaattttaacattttgatttggttttgtttgcCCTTCCATAAACTGTTCAAGTGTTACAGAACACTATTTATACAACTTGACTGACTATAATAGTGATACAGTATGTTTACACTTAATTTATTTCGTTGATGTTTTATGAGTGAGCTCAGTAGAAGTACTTTTCTTCTGGGAGGCAAATATACACACCAAGTTCTACTCTGAGGCAGACACCACCATATTGTTTCATGTCTGTTCAGGGCTGGCGTTTTCGTTCTCAAACCTAAATAGTATCTGTTCTGTTGTCAGCTCAGACAACAAGGAATGCTAACCCTGCTGGCTATCAAGAAGTGGGACCACACTGTTAAGTCTCTGTGAGCTTTCTATCACAGCAGAACCACAGGCTGGTCTGCTGACTCAGTGATGGGACTAGATGGGTGATAGCCCAGTGCTAGTATCGCTGTGCGGGTTGTGGACATACATGTTGGTTCAGTTGGAGTTTATTTATTAACGTCTCTGTAAGGGGACTTAACCTGCTGCTGGCCATGTAACCATTACTACTAATTTAAcctgcattaataaaaactgacatttcaaatgaaaaaaaa

Function

symbol description
vps4a Predicted to enable ATP hydrolysis activity. Predicted to be involved in endosomal transport and vacuole organization. Predicted to act upstream of or within cell division. Predicted to be located in late endosome membrane. Predicted to be active in nucleus. Orthologous to human VPS4A (vacuolar protein sorting 4 homolog A).

NR:

description
vacuolar protein sorting-associated protein 4A

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K12196 VPS4; vacuolar protein-sorting-associated protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807966.1 True 3444 mRNA 0.45 11 41329242 41341893

Neighbor

gene id symbol gene type direction distance location
sntb2 sntb2 coding upstream 265 41298625 ~ 41328977 (+)
spire2 spire2 coding upstream 35896 41247591 ~ 41293346 (+)
chst6 LOC103368421,LOC104956223 coding upstream 87810 41229696 ~ 41241432 (+)
tmem231 tmem231,LOC102799778 coding upstream 104689 41219604 ~ 41224553 (+)
adat1 NA coding upstream 120146 41196459 ~ 41209096 (+)
chmp1a chmp1a,LOC102798084 coding downstream 47922 41389815 ~ 41397809 (+)
slc10a3 LOC104954733,LOC100690979,LOC101468339,LOC102207614 coding downstream 64233 41406126 ~ 41408765 (+)
LOC120564366 fanca coding downstream 72022 41413915 ~ 41441682 (+)
LOC120564315 NA coding downstream 117740 41459633 ~ 41460481 (+)
spata2l NA coding downstream 169080 41510973 ~ 41516870 (+)
G91451 NA non-coding upstream 117443 41210504 ~ 41211799 (+)
G91383 NA non-coding upstream 468354 40843078 ~ 40860888 (+)
G91363 NA non-coding upstream 601824 40727146 ~ 40727418 (+)
G91358 NA non-coding upstream 616288 40712744 ~ 40712954 (+)
G91292 LOC107389246,LOC100694841 non-coding upstream 796025 40526743 ~ 40533217 (+)
G91614 NA non-coding downstream 223190 41565083 ~ 41566409 (+)
G91625 NA non-coding downstream 246749 41588642 ~ 41676049 (+)
G91641 NA non-coding downstream 400292 41742185 ~ 41745030 (+)
G91648 NA non-coding downstream 410555 41752448 ~ 41752809 (+)
G91731 NA non-coding downstream 451658 41793551 ~ 41801340 (+)
exoc3l1 LOC106535935,LOC103369297,LOC103466291,LOC104962074,LOC101469518 other upstream 251020 41054390 ~ 41078222 (+)
LOC120563418 LOC101477895,LOC102304763,LOC106675229,LOC102199463 other upstream 373295 40953506 ~ 40955947 (+)
smpd3 smpd3,LOC102789354 other upstream 379077 40867721 ~ 40950165 (+)
gins3 gins3 other upstream 618809 40703181 ~ 40710433 (+)
LOC120564712 LOC108250350,LOC108250755 other upstream 826415 40472848 ~ 40502827 (+)
LOC120564397 NA other downstream 123771 41465664 ~ 41467325 (+)
vps9d1 vps9d1 other downstream 127350 41469243 ~ 41496536 (+)
plcg2 plcg2 other downstream 283220 41625113 ~ 41667528 (+)
G91634 NA other downstream 350631 41692524 ~ 41732835 (+)
zfpm1 zfpm1 other downstream 533325 41875218 ~ 42014502 (+)

Expression


Co-expression Network