LOC120563880


Basic Information

Item Value
gene id LOC120563880
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 38360455 ~ 38361847 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808356.1
tttatttaccatgCTGTTAATTTCCTAAAAAGGTATTTGATTGGCTTAGAATGATAAAAATCGTTCCACTCTTTCCAATTACACTGATTAATGGCATGTCTATTTAAGTGGTGGTTTGAATGTTGGTTTTAATGTATCAAACATGGAATCAAAACCAAGAAGGGCGAGAAAGCCCAACTGGACAGAGGAACAGTGTTTACTGTTAGCCCAGTTAGTGGAGGAACACAAGGCCATTCTTAAAGGAAAATTCGGGCCGGGTGTCACAGCACGGGACAAGAAGCAGACATGGGAGCGTATAGCACAAACTATTAACGGTTCATTCCCCCTGCTTGTGCGCACCAATGAAGACTGTGAGAAACGCTGGTATGTGTTGCAATCAAAAGCCAGAGAGGAAATTGCAGCACACAAGCGGGAGTCTTCACGCACAGGTGAGTGCTATAACACTTTTTTGTACGCTGGCAAACTTATCTCTAACAATTATATATGtatagcctactgtacatgTGGTCCACTGTATTGTTTTTTAGGGGGGGGACCACCTGCTAAACAGCTGTCCCAAGTAGCCCAAACCGTTTTTAACATCTTAGGTCACTCAGAAACGAGTATCACCGGTTTGAAGGAGGGCACAGACAGCTCAATGATTCAGCTGGTGGAACTACAAAAATGTAGCACAGAGCCTTCAGCAGAGGAATGGGGACCGTCGACATCGCAGGTGGGCGACCCTCAGCCCGAAGCGCCTCATTCCCTGCCTTCTGCTGCCACCGCAGCTGCTCCAACACCATCCCTAGTAGACAAAAAactggagatggagatggatgtCCTAAAGCAGCAGAAAATAGTACTCCATCTACAGGAGGAGTACTACAAACTAAAAATTGAGCTActcaaaaataaaactaataacaaataatatttttttgtgtcttcaTAATATCTTTCTAATGAAAATGTTGGCTAAGGTGTGTCTGTTTAGTCACGatttttatattacattcacAGTAACTTACATGAAATGCAAATTAGTAAACTGAGCTCTGTAAGGATTCCCACTTTGGGACAGATCCCTCCCTTGTGGAGGGTATTCTTCATCATCCTCTTCATCAGCCCGATTGTCCGTGGGAGGGTCTGCAATTTGTCTAGCTTTACAGATGTTATGAAGCACTGCACAGGCTGTTATCACTTTGCAGACCTTTTCTGGTGCCAGTCGCACCTCTCCATGCAAAATGTGAA
>XM_039808357.1
tttatttaccatgCTGTTAATTTCCTAAAAAGGTATTTGATTGGCTTAGAATGATAAAAATCGTTCCACTCTTTCCAATTACACTGATTAATGGCATGTCTATTTAAGTGGTGGTTTGAATGTTGGTTTTAATGTATCAAACATGGAATCAAAACCAAGAAGGGCGAGAAAGCCCAACTGGACAGAGGAACAGTGTTTACTGTTAGCCCAGTTAGTGGAGGAACACAAGGCCATTCTTAAAGGAAAATTCGGGCCGGGTGTCACAGCACGGGACAAGAAGCAGACATGGGAGCGTATAGCACAAACTATTAACGGTTCATTCCCCCTGCTTGTGCGCACCAATGAAGACTGTGAGAAACGCTGGTATGTGTTGCAATCAAAAGCCAGAGAGGAAATTGCAGCACACAAGCGGGAGTCTTCACGCACAGGTGAGTGCTATAACACTTTTTTGTACGCTGGCAAACTTATCTCTAACAATTATATATGtatagcctactgtacatgTGGTCCACTGTATTGTTTTTTAGGGGGGGGACCACCTGCTAAACAGCTGTCCCAAGTAGCCCAAACCGTTTTTAACATCTTAGGTCACTCAGAAACGAGTATCACCGGTTTGAAGGAGGGCACAGACAGCTCAATGATTCAGCTGGTGGAACTACAAAAATGCACAGAGCCTTCAGCAGAGGAATGGGGACCGTCGACATCGCAGGTGGGCGACCCTCAGCCCGAAGCGCCTCATTCCCTGCCTTCTGCTGCCACCGCAGCTGCTCCAACACCATCCCTAGTAGACAAAAAactggagatggagatggatgtCCTAAAGCAGCAGAAAATAGTACTCCATCTACAGGAGGAGTACTACAAACTAAAAATTGAGCTActcaaaaataaaactaataacaaataatatttttttgtgtcttcaTAATATCTTTCTAATGAAAATGTTGGCTAAGGTGTGTCTGTTTAGTCACGatttttatattacattcacAGTAACTTACATGAAATGCAAATTAGTAAACTGAGCTCTGTAAGGATTCCCACTTTGGGACAGATCCCTCCCTTGTGGAGGGTATTCTTCATCATCCTCTTCATCAGCCCGATTGTCCGTGGGAGGGTCTGCAATTTGTCTAGCTTTACAGATGTTATGAAGCACTGCACAGGCTGTTATCACTTTGCAGACCTTTTCTGGTGCCAGTCGCACCTCTCCATGCAAAATGTGAA
>XM_039808358.1
tttatttaccatgCTGTTAATTTCCTAAAAAGGTATTTGATTGGCTTAGAATGATAAAAATCGTTCCACTCTTTCCAATTACACTGATTAATGGCATGTCTATTTAAGTGGTGGTTTGAATGTTGGTTTTAATGTATCAAACATGGAATCAAAACCAAGAAGGGCGAGAAAGCCCAACTGGACAGAGGAACAGTGTTTACTGTTAGCCCAGTTAGTGGAGGAACACAAGGCCATTCTTAAAGGAAAATTCGGGCCGGGTGTCACAGCACGGGACAAGAAGCAGACATGGGAGCGTATAGCACAAACTATTAACGGTTCATTCCCCCTGCTTGTGCGCACCAATGAAGACTGTGAGAAACGCTGGTATGTGTTGCAATCAAAAGCCAGAGAGGAAATTGCAGCACACAAGCGGGAGTCTTCACGCACAGGGGGGGGACCACCTGCTAAACAGCTGTCCCAAGTAGCCCAAACCGTTTTTAACATCTTAGGTCACTCAGAAACGAGTATCACCGGTTTGAAGGAGGGCACAGACAGCTCAATGATTCAGCTGGTGGAACTACAAAAATGTAGCACAGAGCCTTCAGCAGAGGAATGGGGACCGTCGACATCGCAGGTGGGCGACCCTCAGCCCGAAGCGCCTCATTCCCTGCCTTCTGCTGCCACCGCAGCTGCTCCAACACCATCCCTAGTAGACAAAAAactggagatggagatggatgtCCTAAAGCAGCAGAAAATAGTACTCCATCTACAGGAGGAGTACTACAAACTAAAAATTGAGCTActcaaaaataaaactaataacaaataatatttttttgtgtcttcaTAATATCTTTCTAATGAAAATGTTGGCTAAGGTGTGTCTGTTTAGTCACGatttttatattacattcacAGTAACTTACATGAAATGCAAATTAGTAAACTGAGCTCTGTAAGGATTCCCACTTTGGGACAGATCCCTCCCTTGTGGAGGGTATTCTTCATCATCCTCTTCATCAGCCCGATTGTCCGTGGGAGGGTCTGCAATTTGTCTAGCTTTACAGATGTTATGAAGCACTGCACAGGCTGTTATCACTTTGCAGACCTTTTCTGGTGCCAGTCGCACCTCTCCATGCAAAATGTGAA
>XM_039808359.1
tttatttaccatgCTGTTAATTTCCTAAAAAGGTATTTGATTGGCTTAGAATGATAAAAATCGTTCCACTCTTTCCAATTACACTGATTAATGGCATGTCTATTTAAGTGGTGGTTTGAATGTTGGTTTTAATGTATCAAACATGGAATCAAAACCAAGAAGGGCGAGAAAGCCCAACTGGACAGAGGAACAGTGTTTACTGTTAGCCCAGTTAGTGGAGGAACACAAGGCCATTCTTAAAGGAAAATTCGGGCCGGGTGTCACAGCACGGGACAAGAAGCAGACATGGGAGCGTATAGCACAAACTATTAACGGTTCATTCCCCCTGCTTGTGCGCACCAATGAAGACTGTGAGAAACGCTGGTATGTGTTGCAATCAAAAGCCAGAGAGGAAATTGCAGCACACAAGCGGGAGTCTTCACGCACAGTAGCACAGAGCCTTCAGCAGAGGAATGGGGACCGTCGACATCGCAGGTGGGCGACCCTCAGCCCGAAGCGCCTCATTCCCTGCCTTCTGCTGCCACCGCAGCTGCTCCAACACCATCCCTAGTAGACAAAAAactggagatggagatggatgtCCTAAAGCAGCAGAAAATAGTACTCCATCTACAGGAGGAGTACTACAAACTAAAAATTGAGCTActcaaaaataaaactaataacaaataa
>XM_039808360.1
tttatttaccatgCTGTTAATTTCCTAAAAAGGTATTTGATTGGCTTAGAATGATAAAAATCGTTCCACTCTTTCCAATTACACTGATTAATGGCATGTCTATTTAAGTGGTGGTTTGAATGTTGGTTTTAATGTATCAAACATGGAATCAAAACCAAGAAGGGCGAGAAAGCCCAACTGGACAGAGGAACAGTGTTTACTGTTAGCCCAGTTAGTGGAGGAACACAAGGCCATTCTTAAAGGAAAATTCGGGCCGGGTGTCACAGCACGGGACAAGAAGCAGACATGGGAGCGTATAGCACAAACTATTAACGGTTCATTCCCCCTGCTTGTGCGCACCAATGAAGACTGTGAGAAACGCTGGTATGTGTTGCAATCAAAAGCCAGAGAGGAAATTGCAGCACACAAGCGGGAGTCTTCACGCACAGCACAGAGCCTTCAGCAGAGGAATGGGGACCGTCGACATCGCAGGTGGGCGACCCTCAGCCCGAAGCGCCTCATTCCCTGCCTTCTGCTGCCACCGCAGCTGCTCCAACACCATCCCTAGTAGACAAAAAactggagatggagatggatgtCCTAAAGCAGCAGAAAATAGTACTCCATCTACAGGAGGAGTACTACAAACTAAAAATTGAGCTActcaaaaataaaactaataacaaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808356.1 True 1230 mRNA 0.43 2 38360455 38361847
XM_039808357.1 False 1227 mRNA 0.43 2 38360455 38361847
XM_039808358.1 False 1131 mRNA 0.44 3 38360455 38361847
XM_039808359.1 False 672 mRNA 0.45 2 38360455 38361527
XM_039808360.1 False 669 mRNA 0.45 2 38360455 38361527

Neighbor

gene id symbol gene type direction distance location
LOC120563875 LOC102784361,LOC100689846 coding upstream 72570 38272835 ~ 38287885 (+)
LOC120563882 NA coding upstream 114839 38210958 ~ 38245616 (+)
ndufa9a ndufa9 coding upstream 252368 38100538 ~ 38108087 (+)
dyrk4 NA coding upstream 261201 38084390 ~ 38099254 (+)
si:dkey-246g23.4 NA coding upstream 352550 37997385 ~ 38007905 (+)
LOC120563876 NA coding downstream 63179 38425026 ~ 38436266 (+)
ribc2 NA coding downstream 75278 38437125 ~ 38441152 (+)
slc25a18 slc25a18,LOC102783608,LOC106926152 coding downstream 144079 38505926 ~ 38516603 (+)
bcl2l13 bcl2l13 coding downstream 167430 38529277 ~ 38547498 (+)
dennd11 kiaa1147 coding downstream 202061 38563908 ~ 38570624 (+)
LOC120563884 NA non-coding upstream 56810 38302296 ~ 38303645 (+)
G90624 NA non-coding upstream 88283 38269426 ~ 38272172 (+)
LOC120563874 NA non-coding upstream 227273 38131887 ~ 38133182 (+)
LOC120564394 NA non-coding upstream 306277 38052905 ~ 38054178 (+)
G90575 NA non-coding upstream 363682 37996560 ~ 37996773 (+)
G90635 NA non-coding downstream 90955 38452802 ~ 38454316 (+)
G90655 NA non-coding downstream 190480 38552327 ~ 38555712 (+)
G90653 wee2 non-coding downstream 194810 38556657 ~ 38558151 (+)
G90674 agk non-coding downstream 213514 38575361 ~ 38579029 (+)
G90682 NA non-coding downstream 254865 38616712 ~ 38622899 (+)
G90583 NA other upstream 304891 38054509 ~ 38055564 (+)
wfdc1 wfdc1,LOC102778323 other upstream 325761 38022377 ~ 38034694 (+)
mt2 NA other upstream 1828459 36530973 ~ 36531996 (+)
anapc13 anapc13 other upstream 1842534 36516011 ~ 36517921 (+)
G90142 NA other upstream 2575039 35784694 ~ 35785416 (+)
G90686 NA other downstream 296519 38658366 ~ 38680087 (+)
G90693 NA other downstream 515203 38877050 ~ 38879902 (+)
LOC120563436 NA other downstream 1509843 39871690 ~ 39874177 (+)
LOC120564712 LOC108250350,LOC108250755 other downstream 2111001 40472848 ~ 40502827 (+)
gins3 gins3 other downstream 2341334 40703181 ~ 40710433 (+)

Expression


Co-expression Network