lrrc29 (lrrc29,LOC104953705,LOC102207977,LOC102302674)


Basic Information

Item Value
gene id lrrc29
gene name lrrc29,LOC104953705,LOC102207977,LOC102302674
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 36667110 ~ 36683486 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808365.1
CGTCAGACTGCCAAAGGAAATGTACAGCCTGTGGTACAGTGTAAAGTAGCTTAGTGAGATGACAGCAGACAACATAGCTCTCCATTGGCTTCCATTCATCTGAAATTGGTCGTTTAATTGATTAGTTAACGTATAAGAAGGACGCGAGTTGAACGCTAACGGTAGCAAAGTACAGCTTTTTCACTCGTGCAGATAATGTTAGCTAGTGAGCGGCTAATAACTGAGTCACTCGTGATGTTCTGGAGTTCTTTATAATGACGAATGAGAAGCCGAGATGGAAGACTGTAATTGGGAGGACATTATAGAAACACCTGAGCTGCCTCTGGAGATCATAGTTTACATCCTGAGCTTTCTTCACGCTTCAGACAGGAAGGAAGCCTCGCTGGTCTGCCGCAGCTGGTACTATGCCAGTCAGGACTCTCAGAGGAAGATCACCTTCTGCTTCCCGGCTTCAGCCTCATCCCTGGAGCTGATCAGGGGTCTGGGCAGAAAGTCCCGCTGCGGTCTGGTTATCAGTCAGCTCGATGGCTTCAGTATGTCCAGATCCCTGCTTCTGGAGGTGGGTCTGTGCTTGGGCTCTAAGTTGGAGAGCTTGGCCCTGCCTGGTAGCAGTGTAACAGAGGCCTCTCTGCTGGCCCTCCTCCCTCGCCTCACCTCCCTCCGCAGCCTCAACCTGCGGGGCCTGAACAGCCTCTTCATGTCTGGGGCTTTCCTCTCCAGGGAGGAACACAGACAGCAgGTCAGGTCAGCTCTGTCTGGTCTGGAGGAGCTGGACCTGTCCGACATACGCTACCTCTCCGACCTCACCTTCAACCGGCTCACCGGCTGCACCCCGCGCCTCCGCCTCCTCTCGCTGGCCGGCTGCCATATCGCCTTCGAGTTCGACCCGTATGGAGGGTGCCCGGTGGGAGCAGTCAGGGATTCCTCAGCATTGCTGTCACTGAGGAACTTGCGGAGGTTTTTAACGGAGCAGAAATCCACCCTTGTATCGCTGGACCTCAGCAGAACCTCGATCACCCCTGAGTCACTACGCACGGTCGCACAGGTTCAGGATTTGGTCTTAGAGGAACTGTGTCTGCACGGCTGTAAGGAGCTGACCGACTACTCCATGGAGGTTCTGGTGAAGCACCAGCCGAGCCTCCAGAGACTGGGCATCAGTGCCTGCACCGAGCTGACCAGCAGGTCTGTAGAGGCCATAGCGCAGGGCCTCAAGTCCCTGACACACCTCTCCTTGTCCCGCGATTGGAGGATCACTGAAAAAGGCCTGGCGGACCTTCTGTCCGTGTCGTCCCTGAGGAGTCTGGATCTGTCCGAGTGTCTGCACGTCAGCGGGACAGAGATAGTGAACGGCTTGACGGAATCCAGTGCTGCCAGAGCACAGCTGGAGACTCTCAACCTCAAGAGCTGCACCTACATTAGGgaTCTTGCCGTTTTCTCTCTCACCCAGCTACTTGGGGATACTCTGCGTGAGCTGGACTTGACATCGTGCGTCAATGTGACCGACCTGTCCGTGCGCGCCATAGCCACGTACCTGCAGAGGCTGGTGGTTCTGCGGCTCGGCTGGTGCAAAGAAGTCACAGACTGGGGTCTGCTGGGGATGGTGGAAACGGCCAGATGTGAGCCGGACCAGGAGACGGGAGACAAGGGTCCCAGGTTCACCCGGACCTTCGGCAACATGGGCTTCTTCAAGCCTCCCCGTCTGCCGTTCGAGGAGCGACCCAAGCTGGTGACCCAGAACGACCTGCATCAGTTCAGACAGCAGGCCGGAGCTTCGCTCTTAGCCCTCAGCCGGCTGCAGGAGCTGGACCTCTCGGCCTGCCCCAAACTCACTGACAGCAGCATCACACAGgtGGTGCATTACCCAGACCTCCGCCGCCTGTCTCTCTCCATGCTGCCGGAGATCACTGACGCCAGCTTGGCGTCGGTCGCCTGGCACTGCCGCAGCCTCACCAGCCTGGCGCTCAGCCACTGCCCGGGGATCAGTGACCGCGGAGTGGCACAGGCTGCACCGTACCTACGCAGGCTGCAGCATCTCTACCTCTCCTGTTGTAATAACATCACTGACAGGTCCTTGTTACTGCTGGCGCAGCACTGTAACCGCCTGAAAACACTCGACATCTCAAGGTGCAAAAACATCTCGGTGACAGCTGTGGACCTGCTTCAATCACAGCTGCCCTTCTTGGAAAATGTCCACTACAAATGCATCGGTGGGTTTGATCTGACCCTTACACTGAACGACTGATTGAATGTCCTGGATGACTTGCTGACCACAGCCTGCTCCACGGGGTTGGGCCCTTCGCACGTTTCAGCAATTTGCACAAGAACTGACAGAGAATGTTGAAAAGTTTTCATTTTACAGTGGGAGCGATATCACGCCACCCTGTGAGTGGTTTTTATCACGGTCTCTTTAGTGTGAGACAGGTACCACTTGTTTGAAACCAATGTGAAAAATAAGATCATTAACTGTTTAGTCCAACAGCAAGAAGAAAATATTCTCACAGTATCTCATTATAGTGAATTGTTGTTTGGTCCACATTTTTGAGGCGGCAGATGTCGCCAAAACGAGAGATTTTGCTTGTTATTTTGAATTTACTCGTAGTAACAAAGGCGGTTCTATCTGCCGTCTGTTACGAGGTAAACAGTATCTCATCATAGTCATCGTAATACTCAACACAGCTGAAGGTTGGGCACAAAAACTAAATGAAAGAAGCTGTCACATAAAagattaaaattatatttttaatatgtatAATGTAATTCTATATTTCATATGTTTTAACTAATTTGACTAAAATTGTAAGATAAGCTGTGgacacaatgtttttttcccttaaCGTGCtcatttctgttgtttttaagcaataaaagaaagtaAGACTTGATATGGATAGCTTTGGTATCAGTGTTTTTGATTTTCTTGATATAAACCAGTGGACATATTTTTTTCTAACAATGACAGTTGTGTGTTGCTGAAGTAGAAGTAAAGATGTGTATTTAGTAAAATAGTGGTCCTCAAATAGTTTCCTCAACTTCAACTTTTAGAGCCCAGAGAAAGGCCAAATACCGAGGCGAAGGTGAATGAACGGCAAGCGATTTATTTAGCACGGTCTCTTTCAGAAGATGGAGCTCGCCGTTTTTTTGGAAATGACTTCTCCTTTAGAGCACGTCAGTAGTTTAACTGCCTCTGTTCAAACTTAATGGTTTGAATAATTTAAGGGTTCTTTGAAAACTGCCAGCATTATCAGATGTGATAAGCACGCGTTCAGATGGAGTCTCAAATTTGAAGGAATTTATTGAAAGGGAGTAATAGCCCACAAATAGCAGACCAatcatgtcactttttttttcccccaatgaAAATCTGTGGACATGCTGTTATTACCGGATGCTACAAGCTTACCAAAAACACTACAAACTGAACTAACTTGAATTCATCTGTTGTCTTGGCCAACCTAATTAGGAACAATATCCCATGTATACTATCATGTGCATTGTTAATTCATTTTGTATGCTGCACTATGCCAGATGGAAACCCTGATTGTAAATGTGAAAAATCAAGAATAAAAAGATGCTGTTTTATAAATACA
>XM_039808366.1
CGTCAGACTGCCAAAGGAAATGTACAGCCTGTGGTACAGTGTAAAGTAGCTTAGTGAGATGACAGCAGACAACATAGCTCTCCATTGGCTTCCATTCATCTGAAATTGGTCGTTTAATTGATTAGTTAACGTATAAGAAGGACGCGAGTTGAACGCTAACGGTAGCAAAGTACAGCTTTTTCACTCGTGCAGATAATGTTAGCTAGTGAGCGGCTAATAACTGAGTCACTCGTGATGTTCTGGAGTTCTTTATAATGACGAATGAGAAGCCGAGATGGAAGACTGTAATTGGGAGGACATTATAGAAACACCTGAGCTGCCTCTGGAGACAGGAAGGAAGCCTCGCTGGTCTGCCGCAGCTGGTACTATGCCAGTCAGGACTCTCAGAGGAAGATCACCTTCTGCTTCCCGGCTTCAGCCTCATCCCTGGAGCTGATCAGGGGTCTGGGCAGAAAGTCCCGCTGCGGTCTGGTTATCAGTCAGCTCGATGGCTTCAGTATGTCCAGATCCCTGCTTCTGGAGGTGGGTCTGTGCTTGGGCTCTAAGTTGGAGAGCTTGGCCCTGCCTGGTAGCAGTGTAACAGAGGCCTCTCTGCTGGCCCTCCTCCCTCGCCTCACCTCCCTCCGCAGCCTCAACCTGCGGGGCCTGAACAGCCTCTTCATGTCTGGGGCTTTCCTCTCCAGGGAGGAACACAGACAGCAgGTCAGGTCAGCTCTGTCTGGTCTGGAGGAGCTGGACCTGTCCGACATACGCTACCTCTCCGACCTCACCTTCAACCGGCTCACCGGCTGCACCCCGCGCCTCCGCCTCCTCTCGCTGGCCGGCTGCCATATCGCCTTCGAGTTCGACCCGTATGGAGGGTGCCCGGTGGGAGCAGTCAGGGATTCCTCAGCATTGCTGTCACTGAGGAACTTGCGGAGGTTTTTAACGGAGCAGAAATCCACCCTTGTATCGCTGGACCTCAGCAGAACCTCGATCACCCCTGAGTCACTACGCACGGTCGCACAGGTTCAGGATTTGGTCTTAGAGGAACTGTGTCTGCACGGCTGTAAGGAGCTGACCGACTACTCCATGGAGGTTCTGGTGAAGCACCAGCCGAGCCTCCAGAGACTGGGCATCAGTGCCTGCACCGAGCTGACCAGCAGGTCTGTAGAGGCCATAGCGCAGGGCCTCAAGTCCCTGACACACCTCTCCTTGTCCCGCGATTGGAGGATCACTGAAAAAGGCCTGGCGGACCTTCTGTCCGTGTCGTCCCTGAGGAGTCTGGATCTGTCCGAGTGTCTGCACGTCAGCGGGACAGAGATAGTGAACGGCTTGACGGAATCCAGTGCTGCCAGAGCACAGCTGGAGACTCTCAACCTCAAGAGCTGCACCTACATTAGGgaTCTTGCCGTTTTCTCTCTCACCCAGCTACTTGGGGATACTCTGCGTGAGCTGGACTTGACATCGTGCGTCAATGTGACCGACCTGTCCGTGCGCGCCATAGCCACGTACCTGCAGAGGCTGGTGGTTCTGCGGCTCGGCTGGTGCAAAGAAGTCACAGACTGGGGTCTGCTGGGGATGGTGGAAACGGCCAGATGTGAGCCGGACCAGGAGACGGGAGACAAGGGTCCCAGGTTCACCCGGACCTTCGGCAACATGGGCTTCTTCAAGCCTCCCCGTCTGCCGTTCGAGGAGCGACCCAAGCTGGTGACCCAGAACGACCTGCATCAGTTCAGACAGCAGGCCGGAGCTTCGCTCTTAGCCCTCAGCCGGCTGCAGGAGCTGGACCTCTCGGCCTGCCCCAAACTCACTGACAGCAGCATCACACAGgtGGTGCATTACCCAGACCTCCGCCGCCTGTCTCTCTCCATGCTGCCGGAGATCACTGACGCCAGCTTGGCGTCGGTCGCCTGGCACTGCCGCAGCCTCACCAGCCTGGCGCTCAGCCACTGCCCGGGGATCAGTGACCGCGGAGTGGCACAGGCTGCACCGTACCTACGCAGGCTGCAGCATCTCTACCTCTCCTGTTGTAATAACATCACTGACAGGTCCTTGTTACTGCTGGCGCAGCACTGTAACCGCCTGAAAACACTCGACATCTCAAGGTGCAAAAACATCTCGGTGACAGCTGTGGACCTGCTTCAATCACAGCTGCCCTTCTTGGAAAATGTCCACTACAAATGCATCGGTGGGTTTGATCTGACCCTTACACTGAACGACTGATTGAATGTCCTGGATGACTTGCTGACCACAGCCTGCTCCACGGGGTTGGGCCCTTCGCACGTTTCAGCAATTTGCACAAGAACTGACAGAGAATGTTGAAAAGTTTTCATTTTACAGTGGGAGCGATATCACGCCACCCTGTGAGTGGTTTTTATCACGGTCTCTTTAGTGTGAGACAGGTACCACTTGTTTGAAACCAATGTGAAAAATAAGATCATTAACTGTTTAGTCCAACAGCAAGAAGAAAATATTCTCACAGTATCTCATTATAGTGAATTGTTGTTTGGTCCACATTTTTGAGGCGGCAGATGTCGCCAAAACGAGAGATTTTGCTTGTTATTTTGAATTTACTCGTAGTAACAAAGGCGGTTCTATCTGCCGTCTGTTACGAGGTAAACAGTATCTCATCATAGTCATCGTAATACTCAACACAGCTGAAGGTTGGGCACAAAAACTAAATGAAAGAAGCTGTCACATAAAagattaaaattatatttttaatatgtatAATGTAATTCTATATTTCATATGTTTTAACTAATTTGACTAAAATTGTAAGATAAGCTGTGgacacaatgtttttttcccttaaCGTGCtcatttctgttgtttttaagcaataaaagaaagtaAGACTTGATATGGATAGCTTTGGTATCAGTGTTTTTGATTTTCTTGATATAAACCAGTGGACATATTTTTTTCTAACAATGACAGTTGTGTGTTGCTGAAGTAGAAGTAAAGATGTGTATTTAGTAAAATAGTGGTCCTCAAATAGTTTCCTCAACTTCAACTTTTAGAGCCCAGAGAAAGGCCAAATACCGAGGCGAAGGTGAATGAACGGCAAGCGATTTATTTAGCACGGTCTCTTTCAGAAGATGGAGCTCGCCGTTTTTTTGGAAATGACTTCTCCTTTAGAGCACGTCAGTAGTTTAACTGCCTCTGTTCAAACTTAATGGTTTGAATAATTTAAGGGTTCTTTGAAAACTGCCAGCATTATCAGATGTGATAAGCACGCGTTCAGATGGAGTCTCAAATTTGAAGGAATTTATTGAAAGGGAGTAATAGCCCACAAATAGCAGACCAatcatgtcactttttttttcccccaatgaAAATCTGTGGACATGCTGTTATTACCGGATGCTACAAGCTTACCAAAAACACTACAAACTGAACTAACTTGAATTCATCTGTTGTCTTGGCCAACCTAATTAGGAACAATATCCCATGTATACTATCATGTGCATTGTTAATTCATTTTGTATGCTGCACTATGCCAGATGGAAACCCTGATTGTAAATGTGAAAAATCAAGAATAAAAAGATGCTGTTTTATAAATACA

Function

symbol description
lrrc29 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human LRRC29 (leucine rich repeat containing 29).

NR:

description
F-box/LRR-repeat protein 14-like isoform X1

GO: NA

KEGG:

id description
K10275 FBXL9, LRRC29; F-box and leucine-rich repeat protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808365.1 True 3587 mRNA 0.49 11 36667110 36683486
XM_039808366.1 False 3550 mRNA 0.49 11 36667110 36683486

Neighbor

gene id symbol gene type direction distance location
LOC120564181 LOC100709340,LOC102206288,LOC101464383,LOC102303471,LOC103368978 coding upstream 4304 36625898 ~ 36662806 (+)
mmp15a LOC103368972,LOC102304799,LOC104953712 coding upstream 45866 36596925 ~ 36621244 (+)
zpd NA coding upstream 77954 36582894 ~ 36589156 (+)
nup93 nup93,LOC103368977 coding upstream 89251 36543768 ~ 36577859 (+)
steep1 clg7hxorf56,csgr13hxorf56,LOC104938431,LOC101478835,LOC103368976 coding upstream 131223 36534215 ~ 36535887 (+)
c8h12orf4 clg7h12orf4,LOC103368969,LOC102309763,LOC101476100,LOC102208700 coding downstream 45421 36728907 ~ 36759824 (+)
slc45a3 slc45a3 coding downstream 82351 36765837 ~ 36811249 (+)
LOC120563960 fgf6,LOC102786981 coding downstream 134174 36817660 ~ 36826675 (+)
LOC120563959 NA coding downstream 148142 36831628 ~ 36834314 (+)
cdh13 cdh13 coding downstream 525669 37209155 ~ 37669480 (+)
LOC120563368 NA non-coding upstream 71417 36594156 ~ 36595693 (+)
G90241 aars,LOC102788534 non-coding upstream 267040 36397291 ~ 36400070 (+)
G90236 NA non-coding upstream 298680 36312714 ~ 36368430 (+)
G90238 NA non-coding upstream 308892 36352310 ~ 36358218 (+)
G90218 NA non-coding upstream 411544 36255175 ~ 36255566 (+)
G90311 NA non-coding downstream 38439 36721925 ~ 36722827 (+)
G90523 NA non-coding downstream 1014278 37697764 ~ 37697977 (+)
G90575 NA non-coding downstream 1313074 37996560 ~ 37996773 (+)
LOC120564394 NA non-coding downstream 1369419 38052905 ~ 38054178 (+)
LOC120563874 NA non-coding downstream 1448401 38131887 ~ 38133182 (+)
mt2 NA other upstream 135114 36530973 ~ 36531996 (+)
anapc13 anapc13 other upstream 149189 36516011 ~ 36517921 (+)
G90142 NA other upstream 881694 35784694 ~ 35785416 (+)
LOC120563677 gnao1,LOC103367675,LOC108249535,LOC107660763,LOC100693875 other upstream 1676698 34847563 ~ 34990412 (+)
G89836 NA other upstream 2231793 34434089 ~ 34435317 (+)
wfdc1 wfdc1,LOC102778323 other downstream 1338891 38022377 ~ 38034694 (+)
G90583 NA other downstream 1371023 38054509 ~ 38055564 (+)
G90686 NA other downstream 1974880 38658366 ~ 38680087 (+)
G90693 NA other downstream 2193564 38877050 ~ 38879902 (+)
LOC120563436 NA other downstream 3188204 39871690 ~ 39874177 (+)

Expression


Co-expression Network