znrf1 (znrf1)


Basic Information

Item Value
gene id znrf1
gene name znrf1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 40636125 ~ 40700282 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809224.1
GCACTGAGCGCCTCCATTGTCTGgccagtagcagcagcagcggcggagCGGAGAGTACAGAAGCGCCGATCTGAGAGCAGGGGAGCGGCATCACTGGAACCCCGATCTCCTTTGGTTGGAGATCACCGGAACGGACAGACAGAGCGGAAGGCGacgtcatttttttttctacccaAAGGCAGACCGTCGTTTTGGCGGCCAGACAGACAGCAACAGTTGTCACGATGTCTGAGATCGGATGAGCCGAGAGCAGCGGAGGGCACATTGCGGCGCTGCTGTGATTCGGGCCGGGCCGCCTGCGATGATACAGCCGTGTTAATCACCTGGGACAGCGAGAGGGGAGTGTGGTGTATATCAGTGTGTCATTCTGGGCTTACGGCGTCACTCAGCTCGCCAGCCACCCCCCCCCCGTTTGTCTCGAGGTTCTGTCTGCGGGTGAGGTGAATCCAGACGTCAGGGCGGGCTCATGTTCCGCTCATCAGCGAGACGGGCTGTTGCGTCTGCGGAGAGCCAGAGCTGACGAGCCGGCCGAGACACCcggagaggcaggcaggcagacaggcaggccgagagacagacaggagcgAGGGGAGGGGGGCGACAGCCTGTTTCGGCTCTCTCGACCCTTTGCGGATCGAGCCGAGCCCCCTCCTGTTTCCACCCAGAACCCCCACCCATTTGTCTCCCACTTTGGATGGGGGGAAAGCAGAGCACGGCGGGGCGGCCCCGGGGTGCTTTTCCCGGTGTCTCTACGGATGACAGCGCGGTGCCACCCTCGGCCCACTTCGGCCACTACCGGCCGAGTGGCACCATGGGCCTGCGGAGCCGCTCGGTGAGCTCCGTGGCCGGGATGGGCATCGAGCACAGCCCCGCCGTGCCCTTCGGCTTCTACACCCCCAGAGGCACGGACTCGGATCGAGCCGGAGGAGGGTCAGGGGGCACTACCGCCGCCCCCCACGGTACGGGCTACCAGGACACTGGGGGCGGGGGGCACCACACGGACGGGGTGCTCTATCTGGGATCTCGGGGGTCGCTGGCTGACACCTTGCCCCTGCACATCGCACCCCGCTGGTTCAGCGCGCACAGCGGATTCAAGTGTCCTGTCTGCTCCAAGTCCGTGGCGTCCAATGAAATGGAAGTTCACTTCATCATGTGTCTAAGCAAGCCTCGCCTCTCCTACAATGATGATGTGTTGGCGAGGGATGCCGGTGAGTGTGTGATCTGTCTAGAGGAACTGCAGCAAGGGGACACCATAGCCAGACTGCCTTGCCTCTGCATCTACCACAAAAGCTGTATAGACTCATGGTTTGAGATCAATCGGTCTTGCCCCGAACACCcatctgactgactgactgaccacCAGGCCCACTCTGAATACTGTTCAAGgACATCCCGTGGTCCTGCCATGGATATCTGGACACAGACACAACCAAATCGGATGAAACAATCAAAGCGATCAACACATACTTATCCTGACAGAATCCATGATCCCTAACCAAGATAATTATTCCTTGTGAGCTGAACCCAGAAATCGTGACTGTCCAAACCATCGTACACATTAAAGGGCACACATTATTACATCTGCTGAAGAAACTGcttaccccccaaccccccgcCTGCCCTTCCTTCTGTCACCCTCCCATTTCTCCAGGCTAACAGTCCCCTTAAAGGGCTTCATCGGCCTCCCTGACATGCTCAGGATTCTTGCAGGCCTCCAGCAGCTAGCCTTCCATCTTGTATCTGGATCCAAGCCTGTCAGTCTTTAGTGTCCAGCCCCCCCATGGCCTTAACTgggggagaagagaggaagcAGAGCAGGGAGGGGACAGGAGGGAAGATGAAGGAAACCACACGAGCAAGAAAGAAGGAAGACGGCGAGcatgagaaagaggaggaggaggaaaccaaGCGATTGACGATTGTTAAGCTGCAGAAGCTTGCTTTGAGATCAGACCTTTGAAATTATTTGGTGGGGGCCTCTCATCTCACAACAGGACTCCAACTCGGTGACGTCCACTCATAGCAGTTCAGTTCTGTGCCCTTCCTCGCCAATATGACTCAAATCCGAAAGTCCCCAAAATGCTTCTTAGATCTGGTTTGTGCACACCAGGGCGG

Function

symbol description
znrf1 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein K48-linked ubiquitination. Predicted to act upstream of or within protein phosphopantetheinylation and protein ubiquitination. Predicted to be located in endosome; lysosome; and membrane. Is expressed in nervous system; neural tube; and pectoral fin. Orthologous to human ZNRF1 (zinc and ring finger 1).

NR:

description
E3 ubiquitin-protein ligase ZNRF1

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0005764 lysosome cellular_component
GO:0005768 endosome cellular_component
GO:0016020 membrane cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10694 ZNRF1_2; E3 ubiquitin-protein ligase ZNRF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809224.1 True 2115 mRNA 0.58 5 40636125 40700282

Neighbor

gene id symbol gene type direction distance location
ldhd ldhd coding upstream 2390 40613516 ~ 40633735 (+)
anpepa NA coding upstream 49977 40559291 ~ 40586148 (+)
si:dkey-12e7.1 LOC104959053,LOC107389248,LOC106903666,LOC100708592,LOC101482187 coding upstream 78261 40549248 ~ 40557864 (+)
LOC120564785 NA coding upstream 221645 40402108 ~ 40414480 (+)
LOC120564733 NA coding upstream 235174 40376300 ~ 40400951 (+)
ndrg4 ndrg4,LOC102790713 coding downstream 30477 40730759 ~ 40802151 (+)
si:ch211-194m7.4 LOC106675224 coding downstream 119277 40819559 ~ 40829886 (+)
LOC120564750 LOC103379930,LOC101477230,LOC103369301 coding downstream 260571 40960853 ~ 41017023 (+)
si:dkey-30c15.10 LOC103379919 coding downstream 326999 41027281 ~ 41050823 (+)
prmt7 prmt7 coding downstream 380879 41081161 ~ 41096714 (+)
G91292 LOC107389246,LOC100694841 non-coding upstream 102908 40526743 ~ 40533217 (+)
G91288 NA non-coding upstream 116338 40518365 ~ 40519787 (+)
G91286 NA non-coding upstream 126777 40508732 ~ 40509348 (+)
G91285 NA non-coding upstream 127417 40508138 ~ 40508708 (+)
G91284 NA non-coding upstream 128831 40507057 ~ 40507294 (+)
G91358 NA non-coding downstream 12462 40712744 ~ 40712954 (+)
G91363 NA non-coding downstream 26864 40727146 ~ 40727418 (+)
G91383 NA non-coding downstream 142796 40843078 ~ 40860888 (+)
G91451 NA non-coding downstream 510222 41210504 ~ 41211799 (+)
G91465 NA non-coding downstream 638688 41338970 ~ 41339360 (+)
LOC120564712 LOC108250350,LOC108250755 other upstream 133298 40472848 ~ 40502827 (+)
LOC120563436 NA other upstream 761948 39871690 ~ 39874177 (+)
G90693 NA other upstream 1756223 38877050 ~ 38879902 (+)
G90686 NA other upstream 1956038 38658366 ~ 38680087 (+)
G90583 NA other upstream 2580561 38054509 ~ 38055564 (+)
gins3 gins3 other downstream 2899 40703181 ~ 40710433 (+)
smpd3 smpd3,LOC102789354 other downstream 167439 40867721 ~ 40950165 (+)
LOC120563418 LOC101477895,LOC102304763,LOC106675229,LOC102199463 other downstream 253224 40953506 ~ 40955947 (+)
exoc3l1 LOC106535935,LOC103369297,LOC103466291,LOC104962074,LOC101469518 other downstream 354108 41054390 ~ 41078222 (+)
LOC120564397 NA other downstream 765382 41465664 ~ 41467325 (+)

Expression


Co-expression Network