cfdp1 (cfdp1,LOC105419833)


Basic Information

Item Value
gene id cfdp1
gene name cfdp1,LOC105419833
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 39572414 ~ 39597068 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809247.1
GCCTTTGAGCTTGCCGTCGCCGCCACAGGACGTCCTCATTGCAAGAAACGTTACACTAGTACCCCGTTTTATACATTTCGCACACTGGattagattttatttattacagaATTAAAAGAGCAACATTTAAGCTATATTATTGTTAGTAAGGAGGCTTTTGAAGACAGTTGGGGTAACGTTTGTAATGTTGTGAGAGCAGTAATTAAGCTAACGTTTGTAAGAAACACAGGCGGCGGCGCCTTGTAGCGTTAGCCCTTTTTTAATTTACCTCTCTAATGGTCTGAAGGTTTTCCTCCAAAATGATGAACTATTCCGACTACGACTCTGACGGATACTCGTCTAATGAAGATGCAGACTACGTCCCGTCAGATGATAACCTCAGTGAGGATGACATCAATGAGTGTGAAAAGGAAGAGCCTCTCCTCGAGGGCGACGATGTTCCGCACCCTGACAACGGCagcaagaagaagaggaagaaaaaggacATCGGTGTGAGaaagaggaagaaaggagtTCTGAAAGTAGACGGGGAAGAGAAGGACGGCGGTGGAGCAGACGAGGCGCAGCCGGCGCCGCAGGACGAGGTGCAACCGAAACTCCCCGGGGGGCGGCAGGAGGACGATGAAAGCCAGAAGAAGAAATCCGATGACCTCTGGGCGAGTTTCCTGTCTGACGTTGGATCCAGACCCAAAGACCCCCCACCTGCCTCGCAGTCCAGCACCACACCCAAGGATGATTCCTCACTATTGAAGCTTGCTCCTTTGAGTTCAGAAACAAAAGCATCAGAACCTGCTAAAGTCACCATCACACAAGTGTTTGACTTCGCTGGAGAAGAAGTTAGGGTGGAAAAAGTGGTGTCAGCAGACTCCAGAGAAGCTAAGAGTTATCTGAAGAGTCAGAACACCAAACAGGAGGGAAGTGGAGATGAGACGGAGGAGGCCTCATCACCCCGACAGCCACCTCCTCCTGGCCCCAGTGCCAAGCGGCCGGCAGGCGTGTCGGGCATCCTGGGTCGCATCGGGGCGAAGAAGCAGAAGATGAGCACGCTGGAGAAGTCTAAGATGGACTGGGATGCCTTTAAATCAGAGGAGGGCATCACTGAGGAGCTGGCCATCCACAACAGAGGCAGAGAGGGgtatGTGGAGCGGAAGAACTTCTTGGAGCGTGTCGACCACCGCCAGTTTGAGTTAGAAAAAGCAGTGCGACAGAGCAACATGAAACAATGACACAGACTGtcggcacgcacacacacacacacacacacacacacacacacacacacacagtggaacaGATGTTTAGACTCCtgtatctctctccctctctaatgACAGAGTGCTGAGGCTCCAGTCTATTCCAGGATGGGGTATTAATAGGCTGAGTTTGTGGTGCGATGGGGTGTTGAGTGTTCCTGTACTTCCATCCTTGTGAGAACCAATTAGAGTTTCAAACCTCCACACTAACGGCATTTTTGGGGAAGTGaggtcactcttgcctgtccTACTTCCTGACAGACTGGCTGATTTAGGAGCAGGACTTAGTTTCAAGTTTAAAGAAGAATTCCGGTTTGTACACACTAACTTgtcttatttttgtagttttgtccATTGTTTCTATCCGGTTTTTATAACATCATACTCACCAAGGTACAGCAACTGCTGAGATCTGGGACCACAGTGACCGGTCAGAAACAACACAAGCAGCCAGATGATTAGGACCTGGTTGAGGTTAGTTAGGGCGGTGAGCCGAGTGACTTTTCCTTTGAAGGTTCACATCTAGACCCCGTTTGCACCTGGCGTTAACGTGATCTGGATACCTTAAGGCTAATTCAGAACAAAGATTTGCGACGAGACAAAACGGTTGCAGAAACGTTGCAGCGGCCTGTCTGAGTCGAGCGGCCCTGGGTCAAACACAAGCCagcccagtggtgtagtctaatgtattatagtgggtatactgtgccgtatatgggccagaatctgcctttgggggagggtGGGCCATATCACAGTGgagggtctgggtgtcctcccccagggaagttttgagcatcaacgacttcatttcctatATTCGGATAAAAAAAtgtgcaccaatttacggtg
>XM_039809248.1
GCCTTTGAGCTTGCCGTCGCCGCCACAGGACGTCCTCATTGCAAGAAACGTTACACTAGTACCCCGTTTTATACATTTCGCACACTGGattagattttatttattacagaATTAAAAGAGCAACATTTAAGCTATATTATTGTTAGTAAGGAGGCTTTTGAAGACAGTTGGGGTTTTCCTCCAAAATGATGAACTATTCCGACTACGACTCTGACGGATACTCGTCTAATGAAGATGCAGACTACGTCCCGTCAGATGATAACCTCAGTGAGGATGACATCAATGAGTGTGAAAAGGAAGAGCCTCTCCTCGAGGGCGACGATGTTCCGCACCCTGACAACGGCagcaagaagaagaggaagaaaaaggacATCGGTGTGAGaaagaggaagaaaggagtTCTGAAAGTAGACGGGGAAGAGAAGGACGGCGGTGGAGCAGACGAGGCGCAGCCGGCGCCGCAGGACGAGGTGCAACCGAAACTCCCCGGGGGGCGGCAGGAGGACGATGAAAGCCAGAAGAAGAAATCCGATGACCTCTGGGCGAGTTTCCTGTCTGACGTTGGATCCAGACCCAAAGACCCCCCACCTGCCTCGCAGTCCAGCACCACACCCAAGGATGATTCCTCACTATTGAAGCTTGCTCCTTTGAGTTCAGAAACAAAAGCATCAGAACCTGCTAAAGTCACCATCACACAAGTGTTTGACTTCGCTGGAGAAGAAGTTAGGGTGGAAAAAGTGGTGTCAGCAGACTCCAGAGAAGCTAAGAGTTATCTGAAGAGTCAGAACACCAAACAGGAGGGAAGTGGAGATGAGACGGAGGAGGCCTCATCACCCCGACAGCCACCTCCTCCTGGCCCCAGTGCCAAGCGGCCGGCAGGCGTGTCGGGCATCCTGGGTCGCATCGGGGCGAAGAAGCAGAAGATGAGCACGCTGGAGAAGTCTAAGATGGACTGGGATGCCTTTAAATCAGAGGAGGGCATCACTGAGGAGCTGGCCATCCACAACAGAGGCAGAGAGGGgtatGTGGAGCGGAAGAACTTCTTGGAGCGTGTCGACCACCGCCAGTTTGAGTTAGAAAAAGCAGTGCGACAGAGCAACATGAAACAATGACACAGACTGtcggcacgcacacacacacacacacacacacacacacacacacacacacagtggaacaGATGTTTAGACTCCtgtatctctctccctctctaatgACAGAGTGCTGAGGCTCCAGTCTATTCCAGGATGGGGTATTAATAGGCTGAGTTTGTGGTGCGATGGGGTGTTGAGTGTTCCTGTACTTCCATCCTTGTGAGAACCAATTAGAGTTTCAAACCTCCACACTAACGGCATTTTTGGGGAAGTGaggtcactcttgcctgtccTACTTCCTGACAGACTGGCTGATTTAGGAGCAGGACTTAGTTTCAAGTTTAAAGAAGAATTCCGGTTTGTACACACTAACTTgtcttatttttgtagttttgtccATTGTTTCTATCCGGTTTTTATAACATCATACTCACCAAGGTACAGCAACTGCTGAGATCTGGGACCACAGTGACCGGTCAGAAACAACACAAGCAGCCAGATGATTAGGACCTGGTTGAGGTTAGTTAGGGCGGTGAGCCGAGTGACTTTTCCTTTGAAGGTTCACATCTAGACCCCGTTTGCACCTGGCGTTAACGTGATCTGGATACCTTAAGGCTAATTCAGAACAAAGATTTGCGACGAGACAAAACGGTTGCAGAAACGTTGCAGCGGCCTGTCTGAGTCGAGCGGCCCTGGGTCAAACACAAGCCagcccagtggtgtagtctaatgtattatagtgggtatactgtgccgtatatgggccagaatctgcctttgggggagggtGGGCCATATCACAGTGgagggtctgggtgtcctcccccagggaagttttgagcatcaacgacttcatttcctatATTCGGATAAAAAAAtgtgcaccaatttacggtg

Function

symbol description
cfdp1 Acts upstream of or within bone mineralization and cranial skeletal system development. Predicted to be located in kinetochore. Is expressed in brain; fin bud; head; otic vesicle; and yolk syncytial layer. Orthologous to human CFDP1 (craniofacial development protein 1).

NR:

description
craniofacial development protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809247.1 True 2105 mRNA 0.49 7 39572414 39597068
XM_039809248.1 False 1991 mRNA 0.50 8 39572414 39597068

Neighbor

gene id symbol gene type direction distance location
LOC120564046 NA coding upstream 36474 39528252 ~ 39535940 (+)
LOC120564045 NA coding upstream 44372 39515135 ~ 39528042 (+)
LOC120564047 NA coding upstream 65831 39498240 ~ 39506583 (+)
LOC120564044 NA coding upstream 78476 39474362 ~ 39493938 (+)
LOC120564312 NA coding upstream 160551 39404550 ~ 39411863 (+)
bcar1 LOC104967430 coding downstream 7173 39604241 ~ 39687049 (+)
trnap-ugg_2 NA coding downstream 156526 39753594 ~ 39753665 (+)
ric8a ric8a coding downstream 347648 39944716 ~ 39963408 (+)
LOC120564391 NA coding downstream 376550 39973618 ~ 39974980 (+)
dnajc24 dnajc24 coding downstream 673455 40270523 ~ 40277195 (+)
G90957 NA non-coding upstream 60496 39507028 ~ 39511918 (+)
G90960 NA non-coding upstream 79258 39445873 ~ 39493156 (+)
G90948 NA non-coding upstream 146228 39425296 ~ 39426186 (+)
G90931 NA non-coding upstream 194320 39377894 ~ 39378094 (+)
G90929 NA non-coding upstream 205473 39366631 ~ 39366941 (+)
G91002 NA non-coding downstream 93411 39690479 ~ 39693930 (+)
G91028 NA non-coding downstream 106254 39703322 ~ 39703733 (+)
G91034 NA non-coding downstream 157550 39754618 ~ 39757562 (+)
G91059 NA non-coding downstream 246337 39843405 ~ 39863155 (+)
G91050 NA non-coding downstream 277163 39874231 ~ 39875734 (+)
G90693 NA other upstream 692512 38877050 ~ 38879902 (+)
G90686 NA other upstream 892327 38658366 ~ 38680087 (+)
G90583 NA other upstream 1516850 38054509 ~ 38055564 (+)
wfdc1 wfdc1,LOC102778323 other upstream 1537720 38022377 ~ 38034694 (+)
mt2 NA other upstream 3040418 36530973 ~ 36531996 (+)
LOC120563436 NA other downstream 274622 39871690 ~ 39874177 (+)
LOC120564712 LOC108250350,LOC108250755 other downstream 875780 40472848 ~ 40502827 (+)
gins3 gins3 other downstream 1106113 40703181 ~ 40710433 (+)
smpd3 smpd3,LOC102789354 other downstream 1270653 40867721 ~ 40950165 (+)
LOC120563418 LOC101477895,LOC102304763,LOC106675229,LOC102199463 other downstream 1356438 40953506 ~ 40955947 (+)

Expression


Co-expression Network