LOC120564366 (fanca)


Basic Information

Item Value
gene id LOC120564366
gene name fanca
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 41413915 ~ 41441682 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809256.1
GAAACATGGAGGAGAAAGTAAACCAAAACAGCACCCTCAAAAAGCTAGCCAGAGAACTGTCAATTTATTTCTAAAACTACTGTTAACATATTGTTTTCAAACTAATCGGCTTGAACGTCGACTAAAAGTGTTGACACGCATTCAGCCAAAGTAAAATATGTCACTGAGTGCAACGTGTGAGTCGGTTTCTCAGAAAAGGACTCTGTCGAGCCTCTTCGCTGGTCGTGTGGTTAAGAGGCTGAAGCAGGAGGATGGTCAAAGGCTGCAGGAGGCAACAATCCAGCTGTTGgaacagcagcagaacatctgcaGTCTACTCAGGGAGGTGGGGAATCCAGATCTGTGCAACATTTTCCGCACTCAGAATGGAGAGCAGAAACAGGCAGAGTCTGAAGGCATCTCATCTGCCATTGCAGTTTCACTGCTGGTGTGTGAGCTAAGGCGTCAGGCCTTGCAGCTGGGTGTCCCGGTGGCGGTGCTGTCAGTGAAGATGATGCTGGAGAGACTGATGGAGATCACTGAAACTGAAGaagtgaaggaggaagaggacaaaAGGAGTGGGCTTCTCACTTCCTCTCAGAGAGTCCAGCTGTGTCTCCTGCTGGAGTCCAGCAAAGAACTGCTGTCACAGGGAGCCCTCTGCCCTAAACTGCTCTGGCAGGAGTACAGAAGagatcagAGGCTACCAAAGCTGGAGGTGGTGTACCATCTTCACTTTCACAACATCGTCACTCTGAAGTACATCATAGAGAGTGATGAAGGAGTGAGGCTGTGGTTGGTGTCTCAGGCGAAGGCTCTGTGTGGTTGGACGCCTCCACGGGGAGAAGAGGACACCAAACAAGTTCAGCGGAAAGTGTTGTCAActgtggTTGGAGTCTTGTTGGGAAGTGGCTTTGAGCTGAGCCAGGAGTCAGCAGCTGCAGACAGGAGGATCTCTCAGCTCTGCTGCTCAGTGCTGGACGACATGCTCTTCTGGCTTCTCGACACTGTGGAAGAGGGTCTGACGCTGCAGTGTGCTGGAGCAGGAGCTGAGCTATGGATTCAGATATTTGATGCTTCACTGTGTGGAGTTTCAGCATCAGTGGATACCCTTCAGCGTTTCTTCACACACTCCCTGACACAGACTCTCACTTACAAGCCTCGACTAACAGTGTCTGATGCCATCACTCTGCAGAACGAGTGGACCTTTGCAAAAGCAAGCCGGTTGTTGACCTCTCTTTTCTGTAAGCTGGCTGTGATCTTCACTGTGGAGCAGCTGCTGTGTCACCTGCAGCAGGTTTTGGAAACCCACGAGGTCAACTGGAAACACGTCCTGTGCTTCCTCTCCACTCTGCTGGTTTACAACCCCTGTGCCCAGAGCAGCCTTAAAGAGCTGCTGTCCAGACTGCTGAGCTCTGCATTTGAAGGCTATGACCTGGAGAACATGATAACTGCCTTCCTCTTGGCTCGACAGGGTGCACTGGAGGGACCGGGCATCTTCCCTTCCTACAGCAACTGGTTCAAGATGTCTTTCGGTGGAGGCAGTGGCTACCATGCGACCAGTAAGAAATCTCTGGTGTTTCTGCTGAAGTTCCTGTCTGACTTGGTGCCCTTTGAACCCCCACAGTACCTCAAGGTTCACATCCTGCAACCTCCATATGTACCTGTGAAACACCGCAGCCTCCTGATGGAGTACGTCTCTCTGGCCAAGACCAGGCTGGCTGACCTCAAGGAGCCAGTGGAGGACATGGGTTTATATGAGGATGTTTCTGGTGCAGCTGGAGCATCATTGCAGccCCAGTGCCAGGCTGTCCAGGATGTGGAGAAGGCAGTGTCTCTGTTTGAGAGCACAGGAAGAATCTCTGCCACAGTCATGGAGGCCAGTATTTTTCGGAGGCCGTATTTCCTGACACGATTCCTCGCTGCTCTGCTGACACCGAGGATACTTCCTGTCAAAGCTGATGCTCGGATGAGTTTCATAGAAGCTCTGAAAAAggCAGATAAGATTCCTGCTGCACAGTATTCATCTTATGTGGAGTCCTGCCAGAAACAGAGGCAGCAGGATGggagTGCATTGTGTCTGGACACAAATGATGATCCTCTGGAGGTCCTGAAGATTCAGCTGCAGGAGTTCACAGAGCTGGTTGTTGAGGGAATTGACGGAGATATGTCTGCCCAGCTGTCCAGGATCTCACACACTCTGAGTGTCATCTTTCCTGGCCGTCCTGATGAGctgattggacagacagtcATCACAATTAACTTAAACACCCCTCCGTCCCCTGAGCTCCACATCAAAGTCGTCAACATGATCCTGAGAAACTTCTGCCAGTGCATGTTGGATGCTTCCAGAGCAAACCCTCCTAATAAACAAAGTCTGTGGGCCTCCAGGTTCGTCAGTGTGATGCTTGGTAACACACAGTTCCTCTCCAGCCTTATATGCAGACTCTGGGACCTATTTCATAACCAGGGGTCGTCGCTGAGTGCTGCCCACTTACTTGGCCTGGCAGCATTAGTGGTCCATCTCCACGCCTCCATGTCTCACAGTCCTCTGGTTCAGCTGGTCCCGCCCATTCTGCCTACGCCGGTACCTGTTGGAGAAGCTCTCAGCTCGGCGCTGGTCTGCAGCACACATGCTGACATGCTCTTCTGTGTCAGGTTGTGTGTGGCAGCTGCGTGTTATGGGATCTGCAGAGGGGACTCACTGCCTCAGCAACAACAGCAGGACTACATTCTCAACAGCCTTTATAAGAAGctTCTCTACCTCATCCCAAGACTGTTGCCTGAAGCCAGAAGAACTGCCATTACTGCTGGCGGTCCAGTTAGTGAACACCAGGAGGAGAAGCTGCCCGGCCTGTGGAGCAGTGTCACAGACACCAACAGCACCTGGATGAAGACTTCTTGGCATCTGTGGAGGCACCCAGCATTCCGTCAGCTTGAACACACGCCACAGTATCAGTTATTTTTCTCAGAATGGCTGGCTAATGAGCTCAGAGTACATAGAAGTGAAGACGCCCTGTCAGACCCAGAGCGTCAGGAGTACCAGCAATGGGCCTGCCTGGAGCTCTACCTGTCTCGTCTGGAGGAGCATGGAGGCTGTGGAGGAGACATGAAGAAACTCTGCTCTCATCTGCTCAATGCCATCATGGACCAGCAGTTAAGTGACCGGAGCCTGGAAAAGCTAGATTACAGAGTGTCAGATACAGGGACCTGTCTGCCAGACATCCTGTCCAGGTTACAGgagctTGTCTACGAGATGGAAGTGACTGACCTCTATGGCAGCCGTCGAAGCACAGCTGATGTGTGCGACTTCCTTTTTACATGTGTGTCTGAGAGATGCTCCTCCTTAGCTTCACCGAGCATCAGCACTGAGCTCAGCCTgcaacacacactgaacacatggaacagagtACTGCTGGCTCTCCCAGCAGTGTTATTGATTAAAGTAAAGTCTGATGGGGGGAGGGCGACTCTAGAGTGCAACACGCTGATAGAACATGTCAACCAGCATCAGAGGAAGGTGTGTTCTCCGGCCGGTTTGTTGTCCTGCCATCTAACAGCACACCTCCTGAGAGGTGTGTTATGTGCCAGCGTACGTTGCGGACGCCCACAGGAAGAAGTCAACAAAGCCTGGTCTCAGATCAGTCTACGCTGTCCTCTGCTCCTGGTCTCCACAGTGCACTGGTGGGAGCGTCTATCTCCAGTGCTGTTGTCACTGTGGCATCGGCTGTGTGATGGAGAGCCTCTACCAGAGCAGCTGGAGCTCCTCGCTGACTGTAACAACTGGGCCAGCAGTTTAGAGAAGGGGCTGTCGTCGGCGGCATTGCCTGCAGCTGCAGCTCTGCTGCTGGCTGCCAGCCTGCATCGTGCCTGGCAAGGCCGGGGGTGCGACAACCAGGGCTTCAGTGCAGCCCTGAATATGTTGCGACCAGAAAGGGGCACACAGTACCGACAGGTGCTAGTTTTTCTGCTTTTCCTGTGTGTAAATGACCATCTGTCATCACTCCTGTATCCTCAGGAGAGGAGCCATCAGAACACCACAGATTTATGCACAGACCTTCTGCTCGTGTTAGTGGACTCTGCTGACTGGCTGCTCATCTTTGAATCAAACAAACAAGGTGTTTACCAGTCGATCACCATGGTGACATCAGATGAGTTTACTCGACTGATGCCTTGGGCCTTCTACAGCCTGCTGCTCCAGCAGAGTGCTGAGCTGCTACAGAGAGCTGTGTGTTGTCCAGGCTTCCTCCAGACTGCTGTCCTCTGCTACATCAGTCTACTGCAGCTTTTCCTGGAAGGACACACACTTACACCAGCCAATCAGATGGAGCCTTTCCAGATTCTGAGCTACGCCAAACAGTTTCTTCTGAGAGCGATCTCACGGACGCCTCCAACTGCTCTGTCCTCCAGCCAACTCAGACAGCTGGAGTCCCAGTGTGCAGACCTGGACCCAGAGGTTGCAGCGGCTCTCTCTGTGCACCTCGACCCTCACAGCCTCAGCCCAGAGATGGACTTCCTCTGAAAAGCCGCAGACTGACGTTCAGACAGAGAAACTGCCTAAAGTGAACCGTGAAACCCACGACTACAAAAATCTTCTCTATTCCCTCGAGCTTCGGAGGGGTCTCGTTCACATTAATGGTAACTGACGATTAGCAGGtactttgttttaatgtaatCCAACTTTACATCTAACAGAAACATGTTCCTCTCTGTCATATTTATTAAACACTGTATAGATCTTA

Function

symbol description
fanca Predicted to act upstream of or within interstrand cross-link repair. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of Fanconi anaemia nuclear complex. Is expressed in several structures, including brain; eye; gonad; gut; and tail bud. Human ortholog(s) of this gene implicated in several diseases, including Fanconi anemia (multiple); acute myeloid leukemia; esophagus squamous cell carcinoma; ovarian disease (multiple); and skin melanoma. Orthologous to human FANCA (FA complementation group A).

NR:

description
PREDICTED: Fanconi anemia group A protein, partial

GO: NA

KEGG:

id description
K10888 FANCA; fanconi anemia group A protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809256.1 True 4721 mRNA 0.52 42 41413915 41441682

Neighbor

gene id symbol gene type direction distance location
slc10a3 LOC104954733,LOC100690979,LOC101468339,LOC102207614 coding upstream 5150 41406126 ~ 41408765 (+)
chmp1a chmp1a,LOC102798084 coding upstream 16106 41389815 ~ 41397809 (+)
vps4a vps4a,LOC106939979 coding upstream 72022 41329242 ~ 41341893 (+)
sntb2 sntb2 coding upstream 84938 41298625 ~ 41328977 (+)
spire2 spire2 coding upstream 120569 41247591 ~ 41293346 (+)
LOC120564315 NA coding downstream 17951 41459633 ~ 41460481 (+)
spata2l NA coding downstream 69291 41510973 ~ 41516870 (+)
LOC120564437 NA coding downstream 79064 41520746 ~ 41531671 (+)
tat tat coding downstream 98495 41540177 ~ 41552179 (+)
zgc:56622 LOC102206997,LOC103365987,LOC101480675,LOC100696953,LOC102298364 coding downstream 110910 41552592 ~ 41564781 (+)
G91465 NA non-coding upstream 74555 41338970 ~ 41339360 (+)
G91451 NA non-coding upstream 202116 41210504 ~ 41211799 (+)
G91383 NA non-coding upstream 553027 40843078 ~ 40860888 (+)
G91363 NA non-coding upstream 686497 40727146 ~ 40727418 (+)
G91358 NA non-coding upstream 700961 40712744 ~ 40712954 (+)
G91614 NA non-coding downstream 123401 41565083 ~ 41566409 (+)
G91625 NA non-coding downstream 146960 41588642 ~ 41676049 (+)
G91641 NA non-coding downstream 300503 41742185 ~ 41745030 (+)
G91648 NA non-coding downstream 310766 41752448 ~ 41752809 (+)
G91731 NA non-coding downstream 351869 41793551 ~ 41801340 (+)
exoc3l1 LOC106535935,LOC103369297,LOC103466291,LOC104962074,LOC101469518 other upstream 335693 41054390 ~ 41078222 (+)
LOC120563418 LOC101477895,LOC102304763,LOC106675229,LOC102199463 other upstream 457968 40953506 ~ 40955947 (+)
smpd3 smpd3,LOC102789354 other upstream 463750 40867721 ~ 40950165 (+)
gins3 gins3 other upstream 703482 40703181 ~ 40710433 (+)
LOC120564712 LOC108250350,LOC108250755 other upstream 911088 40472848 ~ 40502827 (+)
LOC120564397 NA other downstream 23982 41465664 ~ 41467325 (+)
vps9d1 vps9d1 other downstream 27561 41469243 ~ 41496536 (+)
plcg2 plcg2 other downstream 183431 41625113 ~ 41667528 (+)
G91634 NA other downstream 250842 41692524 ~ 41732835 (+)
zfpm1 zfpm1 other downstream 433536 41875218 ~ 42014502 (+)

Expression


Co-expression Network