cotl1 (cotl1)


Basic Information

Item Value
gene id cotl1
gene name cotl1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 41578178 ~ 41588578 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809410.1
ACGGCCCTCATCCCATTGACCATTGACAGGGAGAAGGTGAATACAGCGTCTGGGggacttctctctgtctctctctctgtctgtctctctgtctgtctgctggcaACCTGATCGACTTGCATCACCAACGCCCATAAAGTAGCAATATACAGGAAATAAACCTAGCTGCTAGAAGAAGAGCATCCGACCGGCTCAATTGTTCCAGTGCAGCGGTCGTGATTTTGGAGTGAAGCCTATTGTATAAGGTTATCAGTTATATTTCTCTGATGTATTACATCAACTGTATAAGTTAGCTGCTTTATTACTGTgtaccgttagctagctctcTCTAACCTGGACTGATACAACGTTGACTTCGACTGTTTCACTCCTGTCTGACGTTAAACGAAAAATGGCAACCCAAATCGATAAAGAGGCTTGCAGAGAAGCTTACAACCAAGTCAGAGACGATAACACGGACACCAATTGGACTGTGTTTAAATATGAGGGCTCTATGATCGTGCCTGCAGGACAAGGGGCTGACTATGAGGACTTCAAGAGGATGTGCACAGATGACGCCCGTCTGTTCGCCTTCGTCCGGATCACAATGGGAGACACCATGAGCAAACGAGCCAAGTTCACTCTCATCACCTGGATCGGTGAGAACATCAGCGGGCTGCAGCGCGCCAAGATCAGCACCGACAAGGCGCTGGTCAAAGAGATCGTGCAGAACTTTGCCAAGGAGTTTATGTTTAGTGACCCGAGGGAACTGGAAGCAGACAACATCCGCACAGAGCTGAAGAAGGCTGGTGGAGCCAACTATGACGCTCAGACCGAGTAGAGAAGTGCCATGGTTCACTGGAAGGgttggggcggggggggg

Function

symbol description
cotl1 Predicted to enable actin filament binding activity. Predicted to be involved in regulation of actin filament polymerization. Predicted to be active in cortical actin cytoskeleton and plasma membrane. Predicted to colocalize with actin filament. Is expressed in blood; epidermis; and periderm. Orthologous to human COTL1 (coactosin like F-actin binding protein 1).

NR:

description
PREDICTED: coactosin-like protein

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809410.1 True 862 mRNA 0.50 4 41578178 41588578

Neighbor

gene id symbol gene type direction distance location
zgc:56622 LOC102206997,LOC103365987,LOC101480675,LOC100696953,LOC102298364 coding upstream 13397 41552592 ~ 41564781 (+)
tat tat coding upstream 25999 41540177 ~ 41552179 (+)
LOC120564437 NA coding upstream 46507 41520746 ~ 41531671 (+)
spata2l NA coding upstream 61308 41510973 ~ 41516870 (+)
LOC120564315 NA coding upstream 117697 41459633 ~ 41460481 (+)
meak7 tldc1 coding downstream 19252 41607830 ~ 41622551 (+)
acd NA coding downstream 172280 41760858 ~ 41764065 (+)
foxl1 NA coding downstream 179198 41767776 ~ 41769714 (+)
G91614 NA non-coding upstream 11769 41565083 ~ 41566409 (+)
G91465 NA non-coding upstream 238818 41338970 ~ 41339360 (+)
G91451 NA non-coding upstream 366379 41210504 ~ 41211799 (+)
G91383 NA non-coding upstream 717290 40843078 ~ 40860888 (+)
G91363 NA non-coding upstream 850760 40727146 ~ 40727418 (+)
G91625 NA non-coding downstream 64 41588642 ~ 41676049 (+)
G91641 NA non-coding downstream 153607 41742185 ~ 41745030 (+)
G91648 NA non-coding downstream 163870 41752448 ~ 41752809 (+)
G91731 NA non-coding downstream 204973 41793551 ~ 41801340 (+)
G91742 NA non-coding downstream 257164 41845742 ~ 41846896 (+)
vps9d1 vps9d1 other upstream 81642 41469243 ~ 41496536 (+)
LOC120564397 NA other upstream 110853 41465664 ~ 41467325 (+)
exoc3l1 LOC106535935,LOC103369297,LOC103466291,LOC104962074,LOC101469518 other upstream 499956 41054390 ~ 41078222 (+)
LOC120563418 LOC101477895,LOC102304763,LOC106675229,LOC102199463 other upstream 622231 40953506 ~ 40955947 (+)
smpd3 smpd3,LOC102789354 other upstream 628013 40867721 ~ 40950165 (+)
plcg2 plcg2 other downstream 36535 41625113 ~ 41667528 (+)
G91634 NA other downstream 103946 41692524 ~ 41732835 (+)
zfpm1 zfpm1 other downstream 286640 41875218 ~ 42014502 (+)

Expression


Co-expression Network