Gene
RNA
| Item | Value |
|---|---|
| gene id | chmp1a |
| gene name | chmp1a,LOC102798084 |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053119.1 |
| NCBI id | CM020916.1 |
| chromosome length | 42187026 |
| location | 41389815 ~ 41397809 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| chmp1a | Acts upstream of or within cerebellum development. Predicted to be located in endosome; membrane; and nuclear matrix. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 8. Orthologous to human CHMP1A (charged multivesicular body protein 1A). |
| description |
|---|
| PREDICTED: charged multivesicular body protein 1a |
| id | name | namespace |
|---|---|---|
| GO:0015031 | protein transport | biological_process |
| id | description |
|---|---|
| K12197 | CHMP1, VPS46, DID2; charged multivesicular body protein 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039809728.1 | True | 871 | mRNA | 0.52 | 7 | 41389815 | 41397809 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| vps4a | vps4a,LOC106939979 | coding | upstream | 47922 | 41329242 ~ 41341893 (+) |
| sntb2 | sntb2 | coding | upstream | 60838 | 41298625 ~ 41328977 (+) |
| spire2 | spire2 | coding | upstream | 96469 | 41247591 ~ 41293346 (+) |
| chst6 | LOC103368421,LOC104956223 | coding | upstream | 148383 | 41229696 ~ 41241432 (+) |
| tmem231 | tmem231,LOC102799778 | coding | upstream | 165262 | 41219604 ~ 41224553 (+) |
| slc10a3 | LOC104954733,LOC100690979,LOC101468339,LOC102207614 | coding | downstream | 8317 | 41406126 ~ 41408765 (+) |
| LOC120564366 | fanca | coding | downstream | 16106 | 41413915 ~ 41441682 (+) |
| LOC120564315 | NA | coding | downstream | 61824 | 41459633 ~ 41460481 (+) |
| spata2l | NA | coding | downstream | 113164 | 41510973 ~ 41516870 (+) |
| LOC120564437 | NA | coding | downstream | 122937 | 41520746 ~ 41531671 (+) |
| G91465 | NA | non-coding | upstream | 50455 | 41338970 ~ 41339360 (+) |
| G91451 | NA | non-coding | upstream | 178016 | 41210504 ~ 41211799 (+) |
| G91383 | NA | non-coding | upstream | 528927 | 40843078 ~ 40860888 (+) |
| G91363 | NA | non-coding | upstream | 662397 | 40727146 ~ 40727418 (+) |
| G91358 | NA | non-coding | upstream | 676861 | 40712744 ~ 40712954 (+) |
| G91614 | NA | non-coding | downstream | 167274 | 41565083 ~ 41566409 (+) |
| G91625 | NA | non-coding | downstream | 190833 | 41588642 ~ 41676049 (+) |
| G91641 | NA | non-coding | downstream | 344376 | 41742185 ~ 41745030 (+) |
| G91648 | NA | non-coding | downstream | 354639 | 41752448 ~ 41752809 (+) |
| G91731 | NA | non-coding | downstream | 395742 | 41793551 ~ 41801340 (+) |
| exoc3l1 | LOC106535935,LOC103369297,LOC103466291,LOC104962074,LOC101469518 | other | upstream | 311593 | 41054390 ~ 41078222 (+) |
| LOC120563418 | LOC101477895,LOC102304763,LOC106675229,LOC102199463 | other | upstream | 433868 | 40953506 ~ 40955947 (+) |
| smpd3 | smpd3,LOC102789354 | other | upstream | 439650 | 40867721 ~ 40950165 (+) |
| gins3 | gins3 | other | upstream | 679382 | 40703181 ~ 40710433 (+) |
| LOC120564712 | LOC108250350,LOC108250755 | other | upstream | 886988 | 40472848 ~ 40502827 (+) |
| LOC120564397 | NA | other | downstream | 67855 | 41465664 ~ 41467325 (+) |
| vps9d1 | vps9d1 | other | downstream | 71434 | 41469243 ~ 41496536 (+) |
| plcg2 | plcg2 | other | downstream | 227304 | 41625113 ~ 41667528 (+) |
| G91634 | NA | other | downstream | 294715 | 41692524 ~ 41732835 (+) |
| zfpm1 | zfpm1 | other | downstream | 477409 | 41875218 ~ 42014502 (+) |
