tgm2l (LOC103363999,LOC104953692,LOC102308322)


Basic Information

Item Value
gene id tgm2l
gene name LOC103363999,LOC104953692,LOC102308322
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 36445093 ~ 36458111 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809822.1
AGTGTGTCTCAGAGAGGTGGGAGGGCCAGTCTTGTGTGTATAAATACCGAACTGTAGAGACACAGCCTGAAAAGACATCTGAGGACACTTGGAGCAAAATTTTAAAAGACCTGAATAGGAAGAGGATCTGCGATGGCCAACCACAGTGGTTTGATTAATAATGTGGATCTGCGAAGTCATGAAAACAACTTGGCTCACCGCACCAGGGAGATCGATAGGGAGCGCCTGATTGTCCGCAGGGGTCAACCCTTCTCCATAACTTTGCAGTACTCTAAGTCTCTGCCCCCCAAACACCACCTGGAACTGGTCCTGCACCTAGGTAAGAAAGACGAGGTGCTGATTAAGGTTCAGAAGGAGCGTGGGGACGGAGACAAGTGGTGGTTTAACCAACAGGGAGCGCAAGATGAGATGCTGCTGACTCTGCACAGTCCAGCGGACGCTATCATTGGCCAGTACCGTATGGCTGTGTTGGTGATGTCACCTGATGGACGCATTTTAGAGAAGACCGACAAAATTAAGTTCCACCTGCTCTTTAACCCGTGGTGCAAAGATGATGTAGTGTACCTCCCTGATGAGAGTCTGCTCCAGGAGTATGTTATGAATGAAGATGGAGTCATTTACATGGGGAGCTGGGATTACATCAGAAGTAATCCCTGGAATTATGGACAGtttgaGGACTATGTGATGGACATCTGTTTTGAAGTCCTGGATAACTCCAAGGATGCCCTGAAAAACTCAAAGATGGACGTTGAGCACAGATATGACCCCGTCTATGTCAGCAGGGTGATCACTGCGATGGTGAACTCTAACGGAGACAAGGGTGTGTTGACCGGTCGCTGGGACGACTCATACTCCGATGGAGTTCCACCGTACAAATGGACCGGCAGCGTGCCGATCCTTCAACAGTGGAGTAAGGCCGGCGCAAGGGCGGTCAAATACGGCCAATGCTGGGTCTTTGCTGCCGTCGCCTGCACAGTGCTGCGCTGTCTGGGAATCCCAACACGCCTCATCACCAACTTCTCCTCAGCCCATGATGTCGATGGCAATCTCTCTATAGACATCCTGCTGGATGAAAGATTGGAGAGCTTAGAAGGAAGAAACAAGAAAGACAGTAGCTGGAACTTCCACTGTTGGGTCGAGTCCTGGATGAAGAGAGATGATCTCCCCAAAGGATATGACGGCTGGCAGGTGTTGGACCCCACCCCTCAAGAACTGAGTGATGGTGAGTTTTGCTGTGGTCCGTGTCCAGTGACGGCCATCAAGGAGGGAAATCTGGGAGTAAAGTATGACGCTCCGTTTGTATTTGCCGAAGTGAACGCTGACATCATCTACTGGATTGTCCAACAAAATGGCGAAAAGAAGAAGGTCAAGGTGGACCAGTCGGGTGTGGGGAGGAACATCAGCACCAAAAGTGTTTACGGCAACCACAGAGACGATGTCACTCTACACTACAAATATCCTGAGGGCTccaaaaaggagagagaggtgtACGAGAAGGCGGGACGCAAGGTCACAGAGCCGACCAATGGGAGTGCAGAACCAGGACAACTGAAGCTGTCAATCAAGCATGCTAAGCCTGTATTTGGGACAGACTTTGATGTGATTGTTGAGGTGAAGAATGAAGGAAGCAGAGATGCTCATGCTAAGCTGACCATGCTGGTCATGGCTGTAACTTATAATTCTCTCCACCGGGGGGAGTGCCAGAGACAAACAATCAGTGTGACAGTACCCGCTCACAAAGCCCACAAGGAAGTCCTGCGTCTGCACTATGACGATTATGTCAGGTGTGTCTCTGAGCATCATCCGATGAGGGTGAAAGCTTTCTTAGAGGCTCCAGGTGAGAACGAACCCATCATGACCGTGACCAACATCCCACTGAGCATGCCTGAACTCCTCATACAGGTGCCTGGAAAGGCTTTTGTACGGGATCAAGTAATAGGCTTCATCTCCTTCACCAATCCTCTGCCAGTTGCTCTGAAGGGTGGCGTGTTCACTGTGGAGGGGGCCGGTCTACTGCCGGCCACTGAGGTCCATGTTAAtggTGACATATCTCCGGGCCAGAAGGTGTCTGTCGAGTTTGTATTCTCACCCATGCGGACCGGGGTCAGGAAGCTCCTGGTGGACTTTGACTGTGATAGACTGAAGGATGTGAAGGGAGTCGCCACTGTGGTTGTCCGCAAGAAATACCCCTTTGGAATTCCTGaccattattaaaaaaaaactttgagctTACTGAAACCGACACATCTTGTATTGTGAGataatgtgacattttctgGATGGGAGAGGAGGAGCTACCTGTTTGAATGTATTGCAAGTATTATAACAGTGAACTGTATTATGCAAATAAGTTAAAactaagtaactaagtaactaagtTAAACTAAGTTAAACTTAAATGACAAGTTTGTGTCTTCCAGGATGACTGTGACTTTATCCACAATGAAATGCTGGACACAGTGCTAGTTTAATTACCTTGAAGCCACTATGTGTCAGATTTGAACACTTCTGACTTTGCATTACGCCTGGCACTAGATGCCCACTTGGAAATGGACAGAAAGACTACAGGTGACAGCGTCAAAATGGCAAATATGTAATTGCTTTTTGTTTATGATCCTCCTCTGTACCGTTTCATTTCTTGTATTTCTTACTTGACAGAATAGCCAAATTTAACAAGTTTCCTTCTATCTTCATTCCCTTCTCCTGGTCCAAATCATCGCTGTTTTTTACTCCCTTAATATGAACTGAAATGAAAACTATCAGGTCAATAGTCATGAGGTTGAAGGTTAAAAATGTGCTATATGCTTTGTTATGCATATCCTTGTTGAAAAGTATCTGATTTCACAAAATCTGTTGAAAGTTTTGTTTCTTGATTACCTTTTTGCACTGCTTCCAATCCCATTTTGGTCAAAATATGATGGAAGATGAAGAAACTACTGTCATTTAATCCtaatatttttgcatttttataaTAATTCTGTGTTTAAGCTGATATGACACATATGCACAGTAGAGTgcggatacccgacccgagcccgacggaATACacttactcataatttgtattctgaatacgtaacgccggtACATGAATTCctttactccccaacactgcacattgaacattttaaattaaacagtttattaacgtgcgcttgttgccccgtgtgtgcTGATGCGCTGTTGACATTCCCGAaagccttcctacagttgcttaataaaagctttccacacaaacaaacgtacatgtgtcattagtatgagaaaaaaatttgattttaactgtgtctggctcgggtcgggctcggacataaataacCTTAATTCCTGTTGGGCTCCGGTCGGGTTcagttactgctctgtcggacacgGGCTGGAAAAATGAGTCCTGATCAGCACTCTAATGCACCGTATACTTTCAATAAAGTTTTTTATCACCAGTA

Function

NR:

description
PREDICTED: protein-glutamine gamma-glutamyltransferase 2-like

GO:

id name namespace
GO:0018149 peptide cross-linking biological_process
GO:0046872 metal ion binding molecular_function
GO:0003810 protein-glutamine gamma-glutamyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809822.1 True 3443 mRNA 0.46 15 36445093 36458111

Neighbor

gene id symbol gene type direction distance location
exosc6 exosc6 coding upstream 13704 36429502 ~ 36431389 (+)
st3gal2 st3gal2,LOC102780992 coding upstream 54830 36368761 ~ 36390263 (+)
siah1 siah1,LOC102794717 coding upstream 338643 36065628 ~ 36106450 (+)
n4bp1 n4bp1,LOC101465464 coding upstream 396682 36018268 ~ 36048411 (+)
cbln1 cbln1,LOC104949597 coding upstream 751388 35659713 ~ 35693705 (+)
trnal-cag_1 NA coding downstream 5375 36463486 ~ 36463568 (+)
LOC120564167 NA coding downstream 7584 36465695 ~ 36489643 (+)
steep1 clg7hxorf56,csgr13hxorf56,LOC104938431,LOC101478835,LOC103368976 coding downstream 76104 36534215 ~ 36535887 (+)
nup93 nup93,LOC103368977 coding downstream 85657 36543768 ~ 36577859 (+)
zpd NA coding downstream 124783 36582894 ~ 36589156 (+)
G90241 aars,LOC102788534 non-coding upstream 45023 36397291 ~ 36400070 (+)
G90236 NA non-coding upstream 76663 36312714 ~ 36368430 (+)
G90238 NA non-coding upstream 86875 36352310 ~ 36358218 (+)
G90218 NA non-coding upstream 189527 36255175 ~ 36255566 (+)
G90217 NA non-coding upstream 190270 36254401 ~ 36254823 (+)
LOC120563368 NA non-coding downstream 136045 36594156 ~ 36595693 (+)
G90311 NA non-coding downstream 263814 36721925 ~ 36722827 (+)
G90523 NA non-coding downstream 1239653 37697764 ~ 37697977 (+)
G90575 NA non-coding downstream 1538449 37996560 ~ 37996773 (+)
LOC120564394 NA non-coding downstream 1594794 38052905 ~ 38054178 (+)
G90142 NA other upstream 659677 35784694 ~ 35785416 (+)
LOC120563677 gnao1,LOC103367675,LOC108249535,LOC107660763,LOC100693875 other upstream 1454681 34847563 ~ 34990412 (+)
G89836 NA other upstream 2009776 34434089 ~ 34435317 (+)
G89813 NA other upstream 2023912 34381836 ~ 34421181 (+)
G89811 LOC100698998 other upstream 2082716 34360484 ~ 34362377 (+)
anapc13 anapc13 other downstream 57900 36516011 ~ 36517921 (+)
mt2 NA other downstream 72862 36530973 ~ 36531996 (+)
wfdc1 wfdc1,LOC102778323 other downstream 1564266 38022377 ~ 38034694 (+)
G90583 NA other downstream 1596398 38054509 ~ 38055564 (+)
G90686 NA other downstream 2200255 38658366 ~ 38680087 (+)

Expression


Co-expression Network