polr2c (polr2c)


Basic Information

Item Value
gene id polr2c
gene name polr2c
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 41117765 ~ 41122654 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809995.1
GCGGATGGTAAATATTTCCGTGGAGGCCTTCAAGTCTAAGCTGCGGTAGTTGAGTTTGTGGACGATTTTACAACGTCAATTTTTAGGCTTATTTAACTCCAATAATGCCGTATGCTAACCAGCCGACGGTGAAAATCACAGAACTGACAGACGAAAATGTCAAATTTGTCATTGAAAACACAGATTTGGCGGTTGCAAACTCTATCCGCCGCGTCTTCATGTCAGAAGTTGCCACTATAGCAATTGACTGGATCCAGATCGATGCCAATTCATCAGTACTGCACGATGAGTTCATTGCACACAGAGTTGGTCTCATACCTCTCACAAGCGATGACATTGTGGACAAAATGCAGTATTCTAGGGACTGTACCTGTGATGATTTTTGCCCAGAGTGTTCTGTCGAGTTGACGCTGGACGTGCGATGCACTGAGGACCAGACGCGTCATGTCACGTCGCGCGACCTTCTGTCCAACAACCCCAGAGTCATCCCGGTGACTTCTAGGAGTCGAGACAATGATCCCAATGACTACGTCGAACAAGATGACATTTTACTGGTGAAGCTCCGTAAAGGTCAGGAGCTGCGGCTCAGGGCGTACGCCAAGAAGGGCTTTGGTAAGGAGCACGCCAAGTGGAACCCAACAGCGGGGGTTTCCTTCGAGTACGACCCAGACAACGCACTGAGGCACACGGTCTTCCCCCGACCTGAGGAGTGGCCAAAGAGTGAGTACTCCGAGATAGAGGAGGATGAGGTTCAGGCTCCCTACGACCCCAATGGAAAACCAGAAAGGTTCTTTTACAACGTGGAGTCGTGCGGCTCTCTGCGACCGGAGACCATCGTCATGTCGGCGCTCGCCGTCCTCAAGAAGAAGCTCAGCGACCTGCAGACTCAGCTGAGCCACGAGATCCAGAGCGACGTGCTCACCATCAACTGAGGGCTGCAGTTACACCGCAGATTGGCAGTGTTCCACTTACACtattagattattattttgttaaatgttactttttaaataaatccatcTTGAGGAACTTCA
>XM_039809996.1
AGTCTAAGCTGCGGTAGTTGAGTTTGTGGACGATTTTACAACGTCAATTTTTAGGCTTATTTAACTCCAATAATGCCGTATGCTAACCAGCCGACGGTGAAAATCACAGAACTGACAGACGAAAATGTCAAATTTGTCATTGAAAACACAGATTTGGCCAATTGACTGGATCCAGATCGATGCCAATTCATCAGTACTGCACGATGAGTTCATTGCACACAGAGTTGGTCTCATACCTCTCACAAGCGATGACATTGTGGACAAAATGCAGTATTCTAGGGACTGTACCTGTGATGATTTTTGCCCAGAGTGTTCTGTCGAGTTGACGCTGGACGTGCGATGCACTGAGGACCAGACGCGTCATGTCACGTCGCGCGACCTTCTGTCCAACAACCCCAGAGTCATCCCGGTGACTTCTAGGAGTCGAGACAATGATCCCAATGACTACGTCGAACAAGATGACATTTTACTGGTGAAGCTCCGTAAAGGTCAGGAGCTGCGGCTCAGGGCGTACGCCAAGAAGGGCTTTGGTAAGGAGCACGCCAAGTGGAACCCAACAGCGGGGGTTTCCTTCGAGTACGACCCAGACAACGCACTGAGGCACACGGTCTTCCCCCGACCTGAGGAGTGGCCAAAGAGTGAGTACTCCGAGATAGAGGAGGATGAGGTTCAGGCTCCCTACGACCCCAATGGAAAACCAGAAAGGTTCTTTTACAACGTGGAGTCGTGCGGCTCTCTGCGACCGGAGACCATCGTCATGTCGGCGCTCGCCGTCCTCAAGAAGAAGCTCAGCGACCTGCAGACTCAGCTGAGCCACGAGATCCAGAGCGACGTGCTCACCATCAACTGAGGGCTGCAGTTACACCGCAGATTGGCAGTGTTCCACTTACACtattagattattattttgttaaatgttactttttaaataaatccatcTTGAGGAACTTCA

Function

symbol description
polr2c Predicted to enable protein dimerization activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of RNA polymerase II, core complex. Orthologous to human POLR2C (RNA polymerase II subunit C).

NR:

description
DNA-directed RNA polymerase II subunit RPB3

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03011 RPB3, POLR2C; DNA-directed RNA polymerase II subunit RPB3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809995.1 True 1034 mRNA 0.50 9 41117765 41122654
XM_039809996.1 False 952 mRNA 0.49 8 41117797 41122654

Neighbor

gene id symbol gene type direction distance location
coq9 coq9 coding upstream 1040 41107775 ~ 41116725 (+)
prmt7 prmt7 coding upstream 21051 41081161 ~ 41096714 (+)
si:dkey-30c15.10 LOC103379919 coding upstream 66942 41027281 ~ 41050823 (+)
LOC120564750 LOC103379930,LOC101477230,LOC103369301 coding upstream 100742 40960853 ~ 41017023 (+)
si:ch211-194m7.4 LOC106675224 coding upstream 287879 40819559 ~ 40829886 (+)
wwp2 wwp2 coding downstream 16985 41139639 ~ 41194448 (+)
adat1 NA coding downstream 73805 41196459 ~ 41209096 (+)
tmem231 tmem231,LOC102799778 coding downstream 96950 41219604 ~ 41224553 (+)
chst6 LOC103368421,LOC104956223 coding downstream 107042 41229696 ~ 41241432 (+)
spire2 spire2 coding downstream 124937 41247591 ~ 41293346 (+)
G91383 NA non-coding upstream 256877 40843078 ~ 40860888 (+)
G91363 NA non-coding upstream 390347 40727146 ~ 40727418 (+)
G91358 NA non-coding upstream 404811 40712744 ~ 40712954 (+)
G91292 LOC107389246,LOC100694841 non-coding upstream 584548 40526743 ~ 40533217 (+)
G91288 NA non-coding upstream 597978 40518365 ~ 40519787 (+)
G91451 NA non-coding downstream 87850 41210504 ~ 41211799 (+)
G91465 NA non-coding downstream 216316 41338970 ~ 41339360 (+)
G91614 NA non-coding downstream 442429 41565083 ~ 41566409 (+)
G91625 NA non-coding downstream 465988 41588642 ~ 41676049 (+)
G91641 NA non-coding downstream 619531 41742185 ~ 41745030 (+)
exoc3l1 LOC106535935,LOC103369297,LOC103466291,LOC104962074,LOC101469518 other upstream 39543 41054390 ~ 41078222 (+)
LOC120563418 LOC101477895,LOC102304763,LOC106675229,LOC102199463 other upstream 161818 40953506 ~ 40955947 (+)
smpd3 smpd3,LOC102789354 other upstream 167600 40867721 ~ 40950165 (+)
gins3 gins3 other upstream 407332 40703181 ~ 40710433 (+)
LOC120564712 LOC108250350,LOC108250755 other upstream 614938 40472848 ~ 40502827 (+)
LOC120564397 NA other downstream 343010 41465664 ~ 41467325 (+)
vps9d1 vps9d1 other downstream 346589 41469243 ~ 41496536 (+)
plcg2 plcg2 other downstream 502459 41625113 ~ 41667528 (+)
G91634 NA other downstream 569870 41692524 ~ 41732835 (+)
zfpm1 zfpm1 other downstream 752564 41875218 ~ 42014502 (+)

Expression


Co-expression Network