tmem231 (tmem231,LOC102799778)


Basic Information

Item Value
gene id tmem231
gene name tmem231,LOC102799778
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 41219604 ~ 41224553 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810005.1
TGACTGCTACCGTTGGCCGCCATGGTAACCGTGagacgctaagctaagctaaaacCTATGGCTAAAACATGGCGCGGTGTATGGTAACTGTAACgttaccatagactgtaaatatggTACTGGGGGCTAACGTAAATAGCATGTTGATACGCTAGCTACGTTTTGTCAAAAATACGCTCTCGATTACTTAACAAAGGTTTATCTGTGTTTGTCTTGCAGTTTGTTGTTGTGAGCGCATTCACTCATGTTACCATCTATGCTAGCTTGAGCATTGacgttaactagctagctaacgttagctggactTGATGACACATAACCCTGGAGGCTACGAACGATATTCATATCGTTACCCATGGCTTTCTATGAAGTCTATTCCCACCCGGCTTTGATTCGGTACAAAACGAGTGTTTGCACGAAAGCCACTCTGTTTCTGGTCGTTGTTTTGTGCCTCACCTACATCCCACCTCTGCTCGTTGCCTACAGGAGCCAAGGTTTCTGGATAAAAAGAAGCACTTATGAGGAACAGCCGGTTGTGAGGTTTCAGTACCAGACTCTGCTGGTGGCAGCAACCAGTACTCAGGGAGACTACGTCGCCTGGAGCACCTTTCCCCATCTAAACAACATGCTTGGTGCCAACCTCCGGATGCCTGCTGTCTCTGTGCGCGAAGAGGACCAGAACCAGGATGGGAAGTTGGACCTCCTGATTTTTCAACTGGAGCTACCTCTAAAACCTGAGGAACAGGTGTACAGTGTACAACTGCTGCTCACCTTCAGCTACAAGCTCTTTCGCATGTCCACAGTGGTGATGCAGAGCCTTGCTTATGTGCAGCACTCTTCTTCTGTCCCCGGAGCTAAGCTGTTCATCAGTGGAGACCTGAGGCTGATGCAGAGGACCCCCCTGCCTCACCGGGGACTGTACAACATTTACAACGTGTCAGTGATCGATGGCTCCAGCCCCTTTGCAAGTGCGTATGACCTGGACAACATAATTAGGAGCTACCAGGACAGGAACTTGACCACAGTACTGTCCTGTCCCATGCCGGTCTGGACTATGGGGCGAGCTGCTGGCTCTCCCTTTCAGCTTAATGCTGAGATCCGGTACCCTATGGAGGTCATAAGCTATCGTCCTGGCTTCTGGGAAACCATCAAATTTGCCTGGATTCAATACGTCAGTgtcctcctcatcttcctctggATCTTTGAACGCATACAGAGATTTGTTTTCCAGAACCAGGTTCTAACCACCGTACCCATACCTTTGGGAAAACCTCACCTGTCATGATGCAGTGGTAGTGCTTTGACCCCCAGGtatccataaatattacatttttctcACAAGGACCAACACTGATACTCTTTGTCTGGAATGTGATACCAAAATCAATGACTGTTTGAATTTTAATGAATAGCCATTAGGTCagttttataattacattatGACATACATAAACATCAAATTCTTCCTTTTATCACTATAAGATTTGTCTTCTTTAAGATTTGTCTTCTATGCAGGAAGTACACCAGTTCTGGCCCTGGAAAATGCATTTCTTTTACTGCTATTTGAAGCAATGGCAATGTATAGAAAATATCAGTACATATTATCATACAATTTGTATGTTTATGACAATTTGTGACAGCAATTAAAGAAATTCTTTGTTCacttttgtattgtattgttagTTTTAGGTGATGGATAATAAACGATTTGTACATTTCAACATGTATCTCCTTTAACTGTAATGCTTTCatcaactttcatctttgacACCAACTATAAAGACACCGTTTACAAATGCAAAA

Function

symbol description
tmem231 Predicted to be involved in cilium assembly; regulation of protein localization; and smoothened signaling pathway. Predicted to act upstream of or within cell projection organization. Predicted to be located in cilium and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of MKS complex. Predicted to be active in ciliary membrane and ciliary transition zone. Is expressed in blood; median fin fold; and periderm. Human ortholog(s) of this gene implicated in Joubert syndrome 20 and Meckel syndrome. Orthologous to human TMEM231 (transmembrane protein 231).

NR:

description
transmembrane protein 231

GO: NA

KEGG:

id description
K19362 TMEM231; transmembrane protein 231

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810005.1 True 1803 mRNA 0.44 7 41219604 41224553

Neighbor

gene id symbol gene type direction distance location
adat1 NA coding upstream 10508 41196459 ~ 41209096 (+)
wwp2 wwp2 coding upstream 25156 41139639 ~ 41194448 (+)
polr2c polr2c coding upstream 96950 41117765 ~ 41122654 (+)
coq9 coq9 coding upstream 102879 41107775 ~ 41116725 (+)
prmt7 prmt7 coding upstream 122890 41081161 ~ 41096714 (+)
chst6 LOC103368421,LOC104956223 coding downstream 5143 41229696 ~ 41241432 (+)
spire2 spire2 coding downstream 23038 41247591 ~ 41293346 (+)
sntb2 sntb2 coding downstream 74072 41298625 ~ 41328977 (+)
vps4a vps4a,LOC106939979 coding downstream 104689 41329242 ~ 41341893 (+)
chmp1a chmp1a,LOC102798084 coding downstream 165262 41389815 ~ 41397809 (+)
G91451 NA non-coding upstream 7805 41210504 ~ 41211799 (+)
G91383 NA non-coding upstream 358716 40843078 ~ 40860888 (+)
G91363 NA non-coding upstream 492186 40727146 ~ 40727418 (+)
G91358 NA non-coding upstream 506650 40712744 ~ 40712954 (+)
G91292 LOC107389246,LOC100694841 non-coding upstream 686387 40526743 ~ 40533217 (+)
G91465 NA non-coding downstream 114417 41338970 ~ 41339360 (+)
G91614 NA non-coding downstream 340530 41565083 ~ 41566409 (+)
G91625 NA non-coding downstream 364089 41588642 ~ 41676049 (+)
G91641 NA non-coding downstream 517632 41742185 ~ 41745030 (+)
G91648 NA non-coding downstream 527895 41752448 ~ 41752809 (+)
exoc3l1 LOC106535935,LOC103369297,LOC103466291,LOC104962074,LOC101469518 other upstream 141382 41054390 ~ 41078222 (+)
LOC120563418 LOC101477895,LOC102304763,LOC106675229,LOC102199463 other upstream 263657 40953506 ~ 40955947 (+)
smpd3 smpd3,LOC102789354 other upstream 269439 40867721 ~ 40950165 (+)
gins3 gins3 other upstream 509171 40703181 ~ 40710433 (+)
LOC120564712 LOC108250350,LOC108250755 other upstream 716777 40472848 ~ 40502827 (+)
LOC120564397 NA other downstream 241111 41465664 ~ 41467325 (+)
vps9d1 vps9d1 other downstream 244690 41469243 ~ 41496536 (+)
plcg2 plcg2 other downstream 400560 41625113 ~ 41667528 (+)
G91634 NA other downstream 467971 41692524 ~ 41732835 (+)
zfpm1 zfpm1 other downstream 650665 41875218 ~ 42014502 (+)

Expression


Co-expression Network