chst6 (LOC103368421,LOC104956223)


Basic Information

Item Value
gene id chst6
gene name LOC103368421,LOC104956223
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 41229696 ~ 41241432 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810007.1
GTCAGCCCAGCAGCAGAGCAGCTGGCCACGTCTCAGAACACGGCTTGGTACGCAACCGGACGGTCAGTCAGTGGAAGTAgccgagcagcagcagcagacggCCGAGGGGAGGAGGACTGCAGGGTGTTGGGACAGAGAGCACTCCGTAACCCGGCTCCGTCGCCAGGCAGCACGACCACAAACTAAGCCAAAGCTGAGGCAACACACAGCTCCACAAAGGGAGAAATATCCACATCAAGCCCCGAGGACCGACTGTGATCCTCAGCCATCATGCCCCGCTGCAGAGTGAACCTCAGCACCATGATTTTCCTGGTGATCCTACAGGGGGCGGCAGTTGTGCTGTTCTGCGGCTGGTACGTCCAGCTCAGTCCCTGCGCCTCTGCCCCCTCCAACGGCAAAGTTCACATTCTGCTGCTGTCCTCGTGGCGATCCGGCTCGTCCTTTGTGGGTCAGGTGTTCAGTCAGCACCCATCCGTCTTCTATCTCATGGAGCCGGCTTGGCACGTGTGGACCAAACTGCAGAAACCCGGTGCACGGGCACTCCGAATGGCTGTGAGGGATCTATTACGGAGTGTATTCCAGTGCGACTTGTCCGTGATGGAGGCCTACCTGCCGGAGCAGCACAACGTGTCCTCCTTGTTTATGTGGAGCCACAGTAGAGCACTGTGCTCGCCGCCAGCCTGTCCGCTTACGCCACGCAACCAGTTCAGCAACCAGACCCGGTGCTTCCAGACATGTGATGCTCGCGGCCTGCAGGCCGTGGAGGACACCTGTGGCACGTACAGTCACGTGGTGCTAAAAGAAGTGAGATTCTTTGAGCTGGAATCTCTCTACCCGctcctgcaggacccgagcctAGATCTCCGCATCATCCACCTGGTCCGGGACCCTCGGGCTGTGGTGCGGTCCAGGGAGGAGTCAGCCAAAGCCTTCGTGAGCGACAACGCCGTCGTCTTGGAGCAGAGGAGCATTCCGGCTGCCGAGGTGCAGTATCAAGTCATGCAGGAGATCTGCCGTAGTCACGTGCGCATTAATGAGAGGGCCATCCTGAAGCCCCCGCCGTTTCTCAAAGGCCGCTACAAGATGGTCCGCTATGAGGACGTGGCGCGCAACCCACTCCAGGAGATCACTGCCATGTATGACTTTGTGGGCCTGGAGATGACCAGACAGTTGGAGGAATGGATCTACAGGGTGACGCACGGAAAAGGCAAAGGCTCCAAGAAAGAGGCCTTCAAAATCACTTCGCGCAACGCTGCCGACGTCTCCCAGGCTTGGCGTTCCACGATGCCACACAACAAGGTCAGACGTATCCAGGAAGTGTGTAAAGGGGCCATGTCATTGCTCGGGTACAGGACGGTTAACAGTGAAAAAGAACAGAAGAGACTTGACATAGATCTACTTGTGCCACGGGAACCGTATCAGTTCAGCTGGTTGCCAGCTAAAACAGAGCATCCCAGTAATGGTTAAAATTACTTTTTAGTATTTGAATGACAAAGACACCGAGAGACTACATTCAACTGAAGTCTATCTTTTTTATAGGCTGTAATGAGTGCTACCGCAGACTGATTCATCAACTGAGGAACCACTGGCATGTTGTCTGAAGTTAAAGCATTGATTTGTGACGAAGACACACCTCACACTGTCAGTGGAGTGAGAGGAttcaaattagggctgcacaatatatcgttttttttatcaactggCAAttaacacatcgcgaaaggctgcgacatatcgtaAAATGAAACAGAGATTTTCTTGTTTTAGtcgaaagaaaatatcagtcgaaaactgcactttaaaatgcaaCTGTGgggccttttatattcaatataacattcaatttgttcaatgaTACAATGTcccttcatttgttttaaattcaacaagcagtttatTTAAGCAGAATATTGAAAGCAGCCGAACTGAATACACTTTTAATCTAaagtttatttatcgcaagtaatatcgtatCGCGATATTCAAAAACTTTATTGCATATtgtcctcatatcgtgcagccctaattaaaaTGTGACAAGACAGCACAGCAGTTattgtatgataaaacaatacatGTACAGAGACAGAGGGGCTGATGCAAGGGCTAGAAAATACTATATCCCATACATTTAGAACTAAACTGGAAACTACATGATGTCATTTACTAAGATTTACTGACATTTTCCCTCAGTCCCTGAATTCGGAAGCCTGGCTCGTGTGTAAAAGTGCTGCAACTaacgaggactgagcctctttaTATGGTGAGCTACCTGGGCGCCCACGCTTttttttcatagtcgattaatctgttgactATTATCTCGATTAAtcattagttgtttggtctataaaatggttAAACATGTGGATCAGTgaccaaagcccaagatgacgtccacaaatgtcttgttttgtccccaactcaaagatcttcagtttcctgtcacagaggagagaagacactagaacatattcacatttatcaagctga

Function

NR:

description
carbohydrate sulfotransferase 6-like

GO: NA

KEGG:

id description
K09671 CHST6; carbohydrate 6-sulfotransferase 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810007.1 True 2493 mRNA 0.49 2 41229696 41241432

Neighbor

gene id symbol gene type direction distance location
tmem231 tmem231,LOC102799778 coding upstream 5143 41219604 ~ 41224553 (+)
adat1 NA coding upstream 20600 41196459 ~ 41209096 (+)
wwp2 wwp2 coding upstream 35248 41139639 ~ 41194448 (+)
polr2c polr2c coding upstream 107042 41117765 ~ 41122654 (+)
coq9 coq9 coding upstream 112971 41107775 ~ 41116725 (+)
spire2 spire2 coding downstream 6159 41247591 ~ 41293346 (+)
sntb2 sntb2 coding downstream 57193 41298625 ~ 41328977 (+)
vps4a vps4a,LOC106939979 coding downstream 87810 41329242 ~ 41341893 (+)
chmp1a chmp1a,LOC102798084 coding downstream 148383 41389815 ~ 41397809 (+)
slc10a3 LOC104954733,LOC100690979,LOC101468339,LOC102207614 coding downstream 164694 41406126 ~ 41408765 (+)
G91451 NA non-coding upstream 17897 41210504 ~ 41211799 (+)
G91383 NA non-coding upstream 368808 40843078 ~ 40860888 (+)
G91363 NA non-coding upstream 502278 40727146 ~ 40727418 (+)
G91358 NA non-coding upstream 516742 40712744 ~ 40712954 (+)
G91292 LOC107389246,LOC100694841 non-coding upstream 696479 40526743 ~ 40533217 (+)
G91465 NA non-coding downstream 97538 41338970 ~ 41339360 (+)
G91614 NA non-coding downstream 323651 41565083 ~ 41566409 (+)
G91625 NA non-coding downstream 347210 41588642 ~ 41676049 (+)
G91641 NA non-coding downstream 500753 41742185 ~ 41745030 (+)
G91648 NA non-coding downstream 511016 41752448 ~ 41752809 (+)
exoc3l1 LOC106535935,LOC103369297,LOC103466291,LOC104962074,LOC101469518 other upstream 151474 41054390 ~ 41078222 (+)
LOC120563418 LOC101477895,LOC102304763,LOC106675229,LOC102199463 other upstream 273749 40953506 ~ 40955947 (+)
smpd3 smpd3,LOC102789354 other upstream 279531 40867721 ~ 40950165 (+)
gins3 gins3 other upstream 519263 40703181 ~ 40710433 (+)
LOC120564712 LOC108250350,LOC108250755 other upstream 726869 40472848 ~ 40502827 (+)
LOC120564397 NA other downstream 224232 41465664 ~ 41467325 (+)
vps9d1 vps9d1 other downstream 227811 41469243 ~ 41496536 (+)
plcg2 plcg2 other downstream 383681 41625113 ~ 41667528 (+)
G91634 NA other downstream 451092 41692524 ~ 41732835 (+)
zfpm1 zfpm1 other downstream 633786 41875218 ~ 42014502 (+)

Expression


Co-expression Network