sntb2 (sntb2)


Basic Information

Item Value
gene id sntb2
gene name sntb2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 41298625 ~ 41328977 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810012.1
AGCTTTAGAGCTTGAACTCAACAACAAGCCCTCAGGCTGGCCCGTCACAGCCagttgttcttttcttttcctctccctcttttttttggGAGTCCTGCTCTTCTGTTTTTTCCTCGGCCTGTGCCTGCAGTCCCAGTGTGAGTGGGTGTGTCGACGCGGGCCAGTGGAGCCTAGTCGCTGCTTGTGCGCACtctgaaaaagaggaaaaaagttgATGATGAGTTCAGTGTGAAAGCGGCCCGCCTCGGAGCAGCAGGCAACCGACTAGGAAGGCATGGCAGTCTGGACCAGAGCGGACAAAAATGGTCAACTGGACCTTCTGCTCCGCGACCGCTGGATCCGAGTGACCGCCGAACTCACCCGAGAAACGCTGACTTTAACGGCCGAAGCGGAGGTAACCGGACAGGGGGGCAACCACTGGGACTACAACAACTCTTCGGCGGGCCTGCGAAATGGCATGTCGAACGGGAACGACCCGGGAACGAGTCCGGGGAACCTTGGACGTGGTCAGACCCCGGGTCAGGACCAGAACCATGGGGGTAGGGGGCGCAGCGGCAGCCCGGGACGCGGGGTTGTCAGTCGGGGTCAATACGACGGTCTGAACAGCCCCGGGAAGTACCACCCGAATAACGGCACAAACTCTGACTTCGGAAGCCCCGGATCTAGCTACGGCAGTCCCGGGTCCAGCTTCGGGTCGAGACAAGGCGACATTCCCGTCACTTTGGGTTTGGACGGCCCCTCGGAAGCGGTGCGTAAAGTCCGAGTTGTCAAACAGGAGTCTGGCGGGCTGGGGATCAGTATCAAGGGGGGGCGCGAGAACCGGATGCCCATCCTCATATCCAAGATCTTCCCGGGGCTCGCCGCCGACCAGAGCCGGGCTCTTCGGGTGGGCGACGCGATCATGTCGGTGAATGGGAACGACCTCCGGGAGGCAACACACGACCTGGCGGTGCAGGCGCTTAAGAAGGCGGGGAAAGAAGTCACGCTGGAGGTGAAGTACATCCGTGAGGTTTCTCCGCTCTTCAAGAAGCCATCCCTGGTGGCCGACCTACCGTGGGACGGCGTCCGCCCACAGTCGCCCAGCTACAGCGGCAGCGAGGACTCCGGTTCACCCAAACACagcagctcctcctcctccaaagACAGAAAAGTCATAAGCCTGAAGATGTGCTTCATCAGCAGGAACCTCACCATGCCAGATCTGGAGAACAGACTTTTGGAGCTCCATTCCCCAGACGGCCAGCACACGGTGGTGCTGCGTTGTAAAGACGGCCCCAGCGCCAACTCCTGGTTCACTGCCGTCCACACCAACATAGCCGCTCTGCTGCCACACACCCTGGCTCACGTCAACGCTTACCTGGGGGCCTCGTCTTCGGCCTCCACACACCCCCATCTCAAACACATTGGCTGGTTGGCTGAACAGGTCCAGCTGGAAGGTGGACGGCAGCAGTACAAGCCCGTGGTCATGGCACTGACGGAGAAGGACATCCTGCTGTTTGAATCGGTGCCGTGGAGCAGAGAGTCCTGGTCCATGCCTCTGCTCACACATCCGCTGCTCGCCACAAGACTCGTTCATTCTGGCAGCACCCGGGGTTCTCCTGCCCAGGGTTCAGACCTGGTGTTTGCCACTCGGACGGGCACAGGGCGGGGAATTGAGTCCCACATCTTCCGAGTGGAGACCCACTGGGATCTGTCTTCATGGACGCGAGCCCTTGTGCAGGGGGCCCACACTGCCGCTGAGCTCATCAAAGAAGTCTCTattggTTGCACATTGAACAGACAGGATGTTCGGCTGACGCTGCACTATGAGAAGGGCTTCACTGTGACGAGGGAGCCGGCAGATCCAGCCGGGGGCGCCGTTCTGTACAGATACCCCTACGAGAAGCTCAAAATGTCCGCCGACGATGGAATACGCAACCTCTACCTTGACTTTGGAGGGCCGGAGGGAGAAATGGTATTTGACCTCCACTCGGGTCCAAAGCCGGTGGTGTTTGTCCTCCACTCCTTCCTGTCAGCCAAGCTCACCCGTATGGGCCTGCTGACGTGAAACAACCAACAGCAGCAGCGTGGACGAGAGGACGGGCCCAGGCACAGCGAGGAGGGGGAAAGACGCTCCCAAAATTATATGATACTGGGAGttgattttttcttttcttttcttttttcactccATCTTCTCCATTCACAGCTGAAGCTGCAGGGAAGATTTAACCCGCGAGTCGTATTTCCGATTGTCTGAAATTTGTGCCTTCTCTTCCAACTTTCTCCTCGGCCTCTTGCAATCATTTGTAGTGCAAGGTCAGGTAAAAAGGATGTGGCACTTTGCTTGAAGTCATGCTGTGTTAATGGACAAAAAGCTATTAACAATCTCATTACATTCCATGTGATGAATGTCACTATGATTATATGATATGATGTAAAAAGATGCTAGGATGCTTTGATGTGCTTATGAGATGCAGTTCAAGCAAAGTGTTACTAAAATATATTAAGGAAAGGGAGGATTTTTAGACAATTAATACACAGCCAAGCACCGATTGGTTATTGTTACCCGTTTTTACTCTATGCCTATCATTCCATGACAGCCTTCCAATGTACTTTGGGCTCtttttaatgtatatttgtttgtCTTTGAGAAAGAAATGTGAGTGAAAGACGCTGTTTAAAAATCAGAATGcagttaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctatactACACGCTTCTGTTAGCTTGGCAGTGTGCCTGCTGTCTGATATTAACCTTTTTAGCACATTATCCCAAACTACTGTTGTAATCAGGAGTGCCAACTGTGCCTTTTTACATGTAGTCAAAGACACTATTTGTAacgtttccttttttatttttatttcacacaACGAGAGAATTTGAAACTTTCGACATGTGCAAGCAATAGTATTACTCTTCTAGTGTAAACCGTGTtactttgttttatgtttttgttgttttgttttaagtgTGTATCTCATGACAGCATAACTTCCAGACATTGAACTCTGTATCAGATGATGATATATGACATGAGCATGTGTTACCTCCCCTCCTTGACCTACACTACCACGTCGTCTCCGTCTCACTGTCGCTATCATCTCATTTCCCTTTGCTTGAGATTACCGGTCTCTTGTTACCGTTCCTCCAGCAGCATTTCTCTGGCTAAGGATTGTTTAACAGGCTTGTTTCAAGGTGGGCTGCCACATGACAGAAGTACCATTGTATTTTAATAATCTGAACTGTAATGGTCGAATACATCTCACCTCCTATGAACCCCCGCAGTAGAAAGGTTACTATACACTTTATGTCCTTCAGCTTCTTGCAGGGCTGAAGAAATGCTTAGTCGACTAACCCTCATGATTAACTAACaagattttgtcgactaatcgattagttgattttatCGAGTGTGCTTTGAGtggtcgttaagactagaaaaagcGCAATATAtaacagtccatttaccatgGTAGTCAGTAGAGCCTCTGTGATCTTTTGGGCCTCAAACAATGTAGCATTGTGTCCACTGACCATGCAACATAGGAGAACAAGATATCCTTTCTGTCCTCCGATCACGAATCCCAATGACCTTTATTCTATTTTGGACTCTGATGTCCTTGTGATTGTTTAACCCTCCGTTGTCTTTGTCTCACATTTAGCCCGTTTTCAAAGTTACTATGTGAGAAATATGTGTTTCTTTCAAGCAcgttgcccaaaaataacataaaaccgCTCTGCGCCGGCCGTTCCATTGATTTCCTATGGGGGGGAGAGCGGTGGCGCCCAACTATGCGCTGCGCTACCACTGGCGTCGCGCACTGTTTGGATTTGCCGCTTTGCTctgcgctcaaagttcaaattatttcaactttgacctagttgCCTCTGACCTTTTCTAAAGCTCAACCAATGAGATAACAGCATTTCGTTACCTAGCGGTGTGGAAAGAGTAAATCGCGTATTATATGTAGGCGGCTTAAATGGTTCTGTACAATGCTCTTCGCAAGTAAAATGTATGATCAGTTCAATACTTTCATAGAATTTTTTagaattttcatttaattttatagcatgagaaaagaaaatgaaaaggttTCAAAATAGTATCCTGACTAACCTTTGACAtatataccagtctgtgattatccatcaacatacgttcctctaatcttaaatcaaaataattcataatttcagcttttttaactCACACATTATGTAAAaattcatataaatgaggtctaccatgaattccaaaaataagtgtaaaactagtggtaataagttggtggtATAGTTAAAAAACGATCACTGAAAAGCGTGACAAAAAcgaaaaaagcaacacaaaagTGTTAATTTTCAGATTTGAGACAGAATATGGAAACTTATTTTGGgttttttgtgaatgtaaaaatatatacacttATAGTTGCTAAAGCTATATAGCTCTTTTTCAGGCTATAGTTTtctttaaacatatttttattgaGATTTTCATATTGCTTTTGAATATGAACATTTTAACCGATGAAATGAATACATTATCCCCCCAATctggcagaaataaataaataagatcaCAGCATTGCAGAAGTTACAGAAAGTTTCAAAAGAATCACAATATCGAAATCATGACTTTCAAAAAATTCTATGTAAGGACTACACAACTGAGCAAAGTTCTTATCTTTCTTTTTACAATATAGTCTCTCCAGTACTAGACAGGCCTTCAGGTCCTTTGTCCACGTTCCAGTAGTAGGTGTTTTCAGCTATACAGGGTTTCCGCTGGGtcgtaaaaagtctaaaaattagctgaagtattgtgttctaggtcttaaataattttaaacaggtctttattttcctacgtccatgcactacctctaaagctcattttctttaattccgtggtgttgtagttctttctttcgctagtccaaatataactttgctgtattacgactacaaatgagaccaacattcAACTtaaattgcagccaatcagctttcgtgttACTGGCGCGAGTCTTTTTCGGATcgtaccacagacataaaacagattttattctttgGGGAAGAGCAAGTTAAGcgatacttggcttgaaaaaaactgaatttagggctcagttgatgttgtgataaaggtcttaaatttcattcataatggtcttaaaaagtcttaaatttgacttggtgaaacctgtagAAACTCTGCTATAGTGAATAGGCTTTGTTAAAGGAGAGCAGCCTTCCCTTTGAACATCATGTGTTTGAGGTAAACATTTGGCCTGACAAAGTCTTGTTCCTGAGTTGCACTCCATCATCCTACTTTTTCGCCTACTTTTCATGTTATGTTAATCGTGATTCTCTAACTCACTGCACAGATCTGATTGTCTTATGTTGGTCAACCTTAAACAGGCTGCAGGCCGTCCCTCCTGGATCTTTATGCACTAACCTATCGAACCCCTTTAAATCTGTGAATGtacacctctcctctccttccagATGATTATTTCTCATCTCCTTTCTCTTTATGCTCTGAGATTGTGGCTGTCCTGTCTATGCAAAGCAATGCTTCGAAGAAGGGGTTATTTGAACCAAAGTTAATGTATGTGGCAGCTTGCGTCCAACACAATCATTGAACTGAAAAGTCACAACAGGATAAAGTGCTGCTGCAACAACCTGTCATATGCAAAGTATTTTAGACTTCCTTCCAAGATACTATACAATGTATGATAGCAATGTAATAATCTCAAATGTAAATACCTACAAtaaaactgttacaaagtaGA

Function

symbol description
sntb2 Predicted to enable structural molecule activity. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be part of dystrophin-associated glycoprotein complex. Predicted to be active in synapse. Orthologous to human SNTB2 (syntrophin beta 2).

NR:

description
beta-2-syntrophin

GO: NA

KEGG:

id description
K24064 SNTB; beta-syntrophin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810012.1 True 5886 mRNA 0.46 7 41298625 41328977

Neighbor

gene id symbol gene type direction distance location
spire2 spire2 coding upstream 5279 41247591 ~ 41293346 (+)
chst6 LOC103368421,LOC104956223 coding upstream 57193 41229696 ~ 41241432 (+)
tmem231 tmem231,LOC102799778 coding upstream 74072 41219604 ~ 41224553 (+)
adat1 NA coding upstream 89529 41196459 ~ 41209096 (+)
wwp2 wwp2 coding upstream 104177 41139639 ~ 41194448 (+)
vps4a vps4a,LOC106939979 coding downstream 265 41329242 ~ 41341893 (+)
chmp1a chmp1a,LOC102798084 coding downstream 60838 41389815 ~ 41397809 (+)
slc10a3 LOC104954733,LOC100690979,LOC101468339,LOC102207614 coding downstream 77149 41406126 ~ 41408765 (+)
LOC120564366 fanca coding downstream 84938 41413915 ~ 41441682 (+)
LOC120564315 NA coding downstream 130656 41459633 ~ 41460481 (+)
G91451 NA non-coding upstream 86826 41210504 ~ 41211799 (+)
G91383 NA non-coding upstream 437737 40843078 ~ 40860888 (+)
G91363 NA non-coding upstream 571207 40727146 ~ 40727418 (+)
G91358 NA non-coding upstream 585671 40712744 ~ 40712954 (+)
G91292 LOC107389246,LOC100694841 non-coding upstream 765408 40526743 ~ 40533217 (+)
G91465 NA non-coding downstream 9993 41338970 ~ 41339360 (+)
G91614 NA non-coding downstream 236106 41565083 ~ 41566409 (+)
G91625 NA non-coding downstream 259665 41588642 ~ 41676049 (+)
G91641 NA non-coding downstream 413208 41742185 ~ 41745030 (+)
G91648 NA non-coding downstream 423471 41752448 ~ 41752809 (+)
exoc3l1 LOC106535935,LOC103369297,LOC103466291,LOC104962074,LOC101469518 other upstream 220403 41054390 ~ 41078222 (+)
LOC120563418 LOC101477895,LOC102304763,LOC106675229,LOC102199463 other upstream 342678 40953506 ~ 40955947 (+)
smpd3 smpd3,LOC102789354 other upstream 348460 40867721 ~ 40950165 (+)
gins3 gins3 other upstream 588192 40703181 ~ 40710433 (+)
LOC120564712 LOC108250350,LOC108250755 other upstream 795798 40472848 ~ 40502827 (+)
LOC120564397 NA other downstream 136687 41465664 ~ 41467325 (+)
vps9d1 vps9d1 other downstream 140266 41469243 ~ 41496536 (+)
plcg2 plcg2 other downstream 296136 41625113 ~ 41667528 (+)
G91634 NA other downstream 363547 41692524 ~ 41732835 (+)
zfpm1 zfpm1 other downstream 546241 41875218 ~ 42014502 (+)

Expression


Co-expression Network