LOC120565620


Basic Information

Item Value
gene id LOC120565620
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9844271 ~ 9846275 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU127195
tttaacaacCATTAGCCTATTACTTTTTATAGGTAGGCCTATTGATATTCATTACTGTTaaactatagcctacatttatgAAGACGTCTgcactgtgtgtttttgaggTTTATATAAAGTTGAAATGGCGGCTGAAGTTCCAAGGCTGTTTTCGATAAACTCATTAATAGGCCTATATGAACAATATAAAAAAGATCCCtggctgcgtgtgtgtttttcgaTTTACTATGGCGTGCCCGTTCATAGACGAGGTAATGGACAAAGAAGCACTAATACTAAGAAGAGCTTTCCGACGAGAAAGATTTTTTCGGGACCGGTCGGACCCTTTGGCTTTTGACGACAGCCATCTGTATGAGCGATACAGATTTTGTGGAGATGGCATACGCTATCTGTGCAGACTGCTGGGTCCGAAAATTCAGCACCGCACATCTCGGAGCCATGCCCTCACCATCCCACAGACGGTGTGTATAGGGCTACGGTTCTTTGCCAGTGGCATATTTTTATATGCAGTTGGAGATGCCGAAAATTTGAGCAAAGCCACAGTTTGCCGTTCAATCAGACAAATGTATTTAGCGCTTAAAGGATTCCTGAACATCTTCATCACCTTTCCTGGACACAAACGAACATGCTTCATTAAGGAGGAATTCTACAAAATTGCAGGTGGGCCTAACATGAATTACAGATTACAGAATCGTGTTACTTTCACAGTAGGCCATTACTCATTATTTTGTGTTACAGGTTTCCCTAATGTGATAGGTGCACTGGACTGCACTCACATTAGAATAAAACGCCCCTCAGGTGTTCATGAGGGAGACTTTGTGAATAGAAAATCCTACCACAGTATCAATGTTCAGATGATCTGTGATGCTGACTGCACTTTCAGCAATGTAGAGGCGAAGTGGCCTGGCTCGGTCCATGACTCCAGAGTCTTTAGGGCCTCTACAATTTTCCAGCGACTTTCACAAGG
>TU127196
tttaacaacCATTAGCCTATTACTTTTTATAGGTAGGCCTATTGATATTCATTACTGTTaaactatagcctacatttatgAAGACGTCTgcactgtgtgtttttgaggTTTATATAAAGTTGAAATGGCGGCTGAAGTTCCAAGGCTGTTTTCGATAAACTCATTAATAGGCCTATATGAACAATATAAAAAAGATCCCtggctgcgtgtgtgtttttcgaTTTACTATGGCGTGCCCGTTCATAGACGAGGTAATGGACAAAGAAGCACTAATACTAAGAAGAGCTTTCCGACGAGAAAGATTTTTTCGGGACCGGTCGGACCCTTTGGCTTTTGACGACAGCCATCTGTATGAGCGATACAGATTTTGTGGAGATGGCATACGCTATCTGTGCAGACTGCTGGGTCCGAAAATTCAGCACCGCACATCTCGGAGCCATGCCCTCACCATCCCACAGACGGTGTGTATAGGGCTACGGTTCTTTGCCAGTGGCATATTTTTATATGCAGTTGGAGATGCCGAAAATTTGAGCAAAGCCACAGTTTGCCGTTCAATCAGACAAATGTATTTAGCGCTTAAAGGATTCCTGAACATCTTCATCACCTTTCCTGGACACAAACGAACATGCTTCATTAAGGAGGAATTCTACAAAATTGCAGGTGGGCCTAACATGAATTACAGATTACAGAATCGTGTTACTTTCACAGTAGGCCATTACTCATTATTTTGTGTTACAGGTTTCCCTAATGTGATAGGTGCACTGGACTGCACTCACATTAGAATAAAACGCCCCTCAGGTGTTCATGAGGGAGACTTTGTGAATAGAAAATCCTACCACAGTATCAATGTTCAGATGATCTGTGATGCTGACTGCACTTTCAGCAATGTAGAGGCGAAGTGGCCTGGCTCGGTCCATGACTCCAGAGTCTTTAGGGCCTCTACAATTTTCCAGCGACTTTCACAAGGGGAATATGCTGGTGTTTTGCTTGGTGACAAGGGCTATGCATGTCAGCCATTTCTTCTGACTCCATTTGCAGACCCC
>XM_039811523.1
agcggaggcgcataaatcaccatggagatttattctgtgcagctagcctggtcccgaccaggctaactgccaggatttatttaatcctggagccttttctgttcacttaGCAGTCACTCTGGTCAACGAAACGAATGTGTTCTTTAATAGGCCTAGTTATTCCATGTTTTCATAGCTGATTACGGACGTTGGACGGGTGGAGACGCGCCAAATTTTTATCGTCACTTTTCAAATTAATAGTTAATTAATTTCACAGTTTACCACAagtttgttgttcttattattattatgttcgATTCCGTTTGAGTTAAATAGGAATTGTAGAATCATTTCTGTCAACATAATACTCATTTTTTGGACTATAGCCTAAATTATTAGTTTCAACAATCATCACCACGTCAGATTGGCGGATCTATATTCTACATTTGGCGAATAAAGCAATTGCTATCCTGACATTTATAAATGTTcctgttattattttaacaacCATTAGCCTATTACTTTTTATAGGTAGGCCTATTGATATTCATTACTGTTaaactatagcctacatttatgAAGACGTCTgcactgtgtgtttttgaggTTTATATAAAGTTGAAATGGCGGCTGAAGTTCCAAGGCTGTTTTCGATAAACTCATTAATAGGCCTATATGAACAATATAAAAAAGATCCCtggctgcgtgtgtgtttttcgaTTTACTATGGCGTGCCCGTTCATAGACGAGGTAATGGACAAAGAAGCACTAATACTAAGAAGAGCTTTCCGACGAGAAAGATTTTTTCGGGACCGGTCGGACCCTTTGGCTTTTGACGACAGCCATCTGTATGAGCGATACAGATTTTGTGGAGATGGCATACGCTATCTGTGCAGACTGCTGGGTCCGAAAATTCAGCACCGCACATCTCGGAGCCATGCCCTCACCATCCCACAGACGGTGTGTATAGGGCTACGGTTCTTTGCCAGTGGCATATTTTTATATGCAGTTGGAGATGCCGAAAATTTGAGCAAAGCCACAGTTTGCCGTTCAATCAGACAAATGTATTTAGCGCTTAAAGGATTCCTGAACATCTTCATCACCTTTCCTGGACACAAACGAACATGCTTCATTAAGGAGGAATTCTACAAAATTGCAGGTGGGCCTAACATGAATTACAGATTACAGAATCGTGTTACTTTCACAGTAGGCCATTACTCATTATTTTGTGTTACAGGTTTCCCTAATGTGATAGGTGCACTGGACTGCACTCACATTAGAATAAAACGCCCCTCAGGTGTTCATGAGGGAGACTTTGTGAATAGAAAATCCTACCACAGTATCAATGTTCAGATGATCTGTGATGCTGACTGCACTTTCAGCAATGTAGAGGCGAAGTGGCCTGGCTCGGTCCATGACTCCAGAGTCTTTAGGGCCTCTACAATTTTCCAGCGACTTTCACAAGGGGAATATGCTGGTGTTTTGCTTGGTGACAAGGGCTATGCATGTCAGCCATTTCTTCTGACTCCATTTGCAGACCCCCAGACAGCAGCACAGCACACCTATAATCTTGCCCATGCAAGATCAAGGGCCAGCATCGAGATGGCATTTGGCCTTTTGAAGTCCCGTTTCCAGTGCCTTCACCACCTAAGAGTCACCCCAGAGAGGGCCTGTGACATCACGGTTGCCTGCACTGCACTGCACAACATTGCCTGCCTGAGGAAGGAAAGGGCTCCCAGAGTAGCCTTGGATATGGACTGGGACAATGAAGCAATATTCCAAGACACTGTCAATGGCAGGCTGTTCAGAGACCAATACGTTGCCAATTACTTTTGA

Function

GO: NA

KEGG:

id description
K23222 HARBI1; nuclease HARBI1

RNA

RNA id representative length rna type GC content exon number start site end site
TU127195 False 967 TUCP 0.43 2 9844749 9845804
TU127196 False 1043 TUCP 0.43 3 9844749 9845981
XM_039811523.1 True 1815 mRNA 0.43 3 9844271 9846275

Neighbor

gene id symbol gene type direction distance location
LOC120565507 NA coding upstream 47282 9785792 ~ 9796989 (+)
hps3 hps3 coding upstream 59131 9766076 ~ 9785140 (+)
fnbp1l fnbp1l,LOC102783810 coding upstream 172483 9614795 ~ 9671788 (+)
LOC120566020 LOC103374322,LOC104940880,LOC103131468,LOC106964853 coding upstream 240696 9589156 ~ 9603575 (+)
depdc1a depdc1 coding upstream 256602 9575258 ~ 9587669 (+)
LOC120565621 NA coding downstream 4850 9851125 ~ 9865455 (+)
fxr1 fxr1,LOC106531534 coding downstream 121079 9967354 ~ 9979742 (+)
sox2 sox2 coding downstream 266707 10112982 ~ 10115322 (+)
kng1 NA coding downstream 594283 10440558 ~ 10450982 (+)
zmat3 zmat3 coding downstream 647254 10493529 ~ 10503066 (+)
G94266 bcar3,LOC102779191,LOC102207586,LOC101480816 non-coding upstream 151238 9691929 ~ 9693033 (+)
G94259 NA non-coding upstream 164534 9662132 ~ 9679737 (+)
G94238 NA non-coding upstream 292580 9547714 ~ 9551691 (+)
G94231 NA non-coding upstream 303212 9540537 ~ 9541059 (+)
LOC120566016 NA non-coding upstream 348914 9493981 ~ 9495357 (+)
G94373 NA non-coding downstream 54920 9901195 ~ 9902122 (+)
LOC120565916 NA non-coding downstream 62632 9908907 ~ 9912100 (+)
G94400 NA non-coding downstream 135147 9981422 ~ 9983844 (+)
G94405 NA non-coding downstream 336919 10183194 ~ 10183408 (+)
LOC120565491 NA non-coding downstream 357865 10204140 ~ 10297258 (+)
G94239 NA other upstream 286703 9552296 ~ 9557568 (+)
LOC120566011 NA other upstream 300736 9384505 ~ 9543535 (+)
G94199 LOC103367571,LOC102312400,LOC100710958,LOC101467655 other upstream 675394 9147162 ~ 9168877 (+)
G94073 rgs5,LOC107393027,LOC104951458,LOC100708109,LOC105932873 other upstream 1557835 8237370 ~ 8286436 (+)
LOC120565614 NA other upstream 1939024 7896145 ~ 7905247 (+)
G94376 NA other downstream 56010 9902285 ~ 9903189 (+)
ttc14 ttc14 other downstream 87338 9933613 ~ 9948237 (+)
LOC120565490 NA other downstream 139444 9985719 ~ 10159881 (+)
atp11b atp11b other downstream 517187 10363462 ~ 10414826 (+)
G94598 NA other downstream 1070650 10916925 ~ 10941244 (+)

Expression


Co-expression Network