G94779 (clg17h1orf52,LOC104926352,LOC103370521,LOC101473273,LOC102790030,LOC102310746)


Basic Information

Item Value
gene id G94779
gene name clg17h1orf52,LOC104926352,LOC103370521,LOC101473273,LOC102790030,LOC102310746
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 11651522 ~ 11659072 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU127840
TTCTCcagtaaaatacattttattgccTACGGTTAAGTGGTTTATGATGAACATTgaaaacaaactttgaaaattATCCATGTACAACAGTTTACACCAAATGAGCAGATTTGCTGGCAGTAACAAAATGTACATAAAACAGTACAATGTTCCAAACATCTTCCGATACTAAACATGCAAGAAGCTTAATTTCACACCGATGTAAAGTGTTGTTTCATGCAAGGTACATGAGACTGAATGAGCAGACTGTATGCATCAAGTATCTTAAGAGAACTGAGATGAGACAGACTTCCAAAATGAAGATCTGAACTCCCCTCCTGACAAACAGTATATACACGGACCATGGTTGTAATTTGGGTGCCCAATGTCCACAGTGTCAAAGTGCAGCAGATGTCACTACAAACATGGAGGGAGTGTTTTCTAGTGTGGCTTAAGGGTGACACCTAGTGCCCATAGGCAGTAagaacaacttttttttatatgtcattttaacAGATTTACAGCCATcttaaatcacatttttaaaaggaaagTCACTGTATTCACACAACACATATTCCATATGTCAGCGGTGATTAGACTTTGTATAATACAAGACAAATACAGACCAAGTAAACCACCACAGCAGACGTCACTGTCAGTTTagctttttaaattaaagcaaaTAGGAGGCAAAGCCAACTAACCACATTAATATTCGTGTATATTCAAAATGTCACAGCCAGCCAAATAATTTGGCCTTTATCCTGATTGGTTATGATAACATTGTAATCACCAACTCCTTTGCAAAGGTCCAGGGACACAGGAACTCAAACAAGAGCAATCAGGCAAGTTTAGACAAGTCTCATTTCACCTTGTTGTCTAGACTACATATTCGGAAGTAAAGTGAAGTTGATGCCAAACTAGGACCAAACCTGTCTAATCACTAGTTTGGTAATGCCCAGTACACGTTGTAAAGCTGTGATATCCCTCATCCCTGTGTACTTTGAAAAGAGTTGGTGGGTAAAAACGATAAGGGATGATGAacaaaactatgaaaacacgATCCAGACTGTAAAACACCTGAATTTTCCTTTTGGGAAAATAGTCTGCAGAGATTTACCAGAATCTAAGTTCTTAAATGGAACATTTTTTACAGTGGGACTGTCATATACTATACTTCTTTTTAAAGTGTGCTGATAGTCCTttggaaacaaaacaaatgctATAATATTGCAAATGACGTCAACATATAGGTCAAATGAGGTTTGCACTATACCACCTACTTGACCGTTGTGCTAAAGTCTGTGAGCGGTCTCAGctgagataaaaaaatatttaaattagaAACAGATTCATTGTTGCAGGAGAGTTTAGGCCTCAATCAACATTTTGCCTGAGGatccttttctcctcctctacGAAATTCTTGTCAGAGGTCGCTTGTCCCAtgtccctcttcctcttctccttctgCTGGAAGGTCTCCACTCGACGTTTCTTGGCAGACAGGTCTAGCTTATCAGATTCCTCATCTGATTCAGAGAGTTCCTCCTCTGCGGGTAAGAACCGGGCATTGCCAGAGAAAGGCTGTGGTGCATCTTCCCCATTGTCCTCATACACATTGGACCACTTTATTGCCATGTCCATGCCTGGGGGAGcccccttcttcttctctggctCCGTGGTGTAGCTCTCAGGAGGGGGTACAGCATTTGTCTTCCATGGCTTAAACTCTCTGGCAGGCTCTTCCGGAGCTTTGACCGTGAGACTCTCCCAGTCTATCTGCTTATTCAGCGGGTTGTAGAGAAAAGCGGGCTTGGACACGGAGCCGAAGAGCTCGTGAGGTTTGGGTAACGGTGCTCCACCGGCGGCTCGTTTGGTCCCTTGTTGGGAGGACTGAGCCCCGTTTCCCGGACCGTCTGTCCCCTGTTTCTTCTTTCGACTATCTTCGTCCTGGTCGGAGTCGCTACCATCGCTGCTGTCGCTCAAATCGTCGTAGCTCGAAAAGAAGCCCAGGCCCGACTTCTTTTCTTCTGTCATTTTGCAGGAGTTACTGACTTTCTATTAAATAACAACCtgttaatgtaaaaacaatgtaaaaagACGAGGATAAAGCTATAGTGTTTGATTTGTACCTGTAAGCTCTACTCCATTTTGAATCAACCTCCAAA

Function

NR:

description
PREDICTED: UPF0690 protein C1orf52 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127840 True 2153 lncRNA 0.42 3 11651522 11659072

Neighbor

gene id symbol gene type direction distance location
dnai3 wdr63 coding upstream 74888 11556357 ~ 11576634 (+)
LOC120566036 LOC104946463 coding upstream 102424 11525470 ~ 11549098 (+)
si:ch211-262h13.5 NA coding upstream 127574 11514958 ~ 11523948 (+)
LOC120565022 NA coding upstream 161484 11473356 ~ 11490038 (+)
LOC120566075 LOC101470345,LOC102300495,LOC102205443,LOC103370586 coding upstream 294651 11311738 ~ 11356871 (+)
LOC120565976 col24a1 coding downstream 25290 11684362 ~ 11786933 (+)
ddah1 ddah1 coding downstream 175483 11834555 ~ 11916573 (+)
c9h1orf210 LOC104958367 coding downstream 311291 11970363 ~ 11980286 (+)
ap1m3 LOC104919037,LOC103355575,LOC103463064,LOC107392936,LOC106528254 coding downstream 322457 11981529 ~ 12014434 (+)
ebna1bp2 NA coding downstream 397066 12056138 ~ 12061625 (+)
G94747 NA non-coding upstream 74261 11576788 ~ 11577261 (+)
G94706 NA non-coding upstream 411285 11238444 ~ 11240237 (+)
G94691 NA non-coding upstream 456592 11194647 ~ 11194930 (+)
G94690 NA non-coding upstream 475305 11176004 ~ 11176217 (+)
G94688 LOC104952604 non-coding upstream 524502 11126756 ~ 11127020 (+)
G94813 NA non-coding downstream 257559 11916631 ~ 11920037 (+)
G94997 NA non-coding downstream 1206840 12865912 ~ 12866251 (+)
G95002 NA non-coding downstream 1336163 12995235 ~ 12995654 (+)
G95027 jak1,LOC102785183 non-coding downstream 1448617 13107689 ~ 13112320 (+)
G95040 NA non-coding downstream 1487233 13146305 ~ 13146795 (+)
LOC120565923 LOC103370579,LOC100695501,LOC102794561,LOC101470646,LOC102226407,LOC102291616 other upstream 193376 11359690 ~ 11458146 (+)
si:ch211-162e15.3 LOC103376230,LOC100712485,LOC108238459,LOC102795316,LOC102207055 other upstream 703206 10946932 ~ 10948316 (+)
G94598 NA other upstream 710278 10916925 ~ 10941244 (+)
atp11b atp11b other upstream 1236696 10363462 ~ 10414826 (+)
LOC120565490 NA other upstream 1491641 9985719 ~ 10159881 (+)
znhit6 znhit6,LOC102790327 other downstream 130063 11789135 ~ 11821882 (+)
lrp8 LOC103355569 other downstream 502566 12161638 ~ 12443080 (+)
ror1 ror1 other downstream 1083733 12742805 ~ 12865842 (+)
raver2 raver2 other downstream 1346496 13005568 ~ 13100445 (+)
G95046 NA other downstream 1513953 13173025 ~ 13220372 (+)

Expression


Co-expression Network