G95173 (ivns1abp)


Basic Information

Item Value
gene id G95173
gene name ivns1abp
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13822853 ~ 13825269 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU128368
ACGTATccgctcatacacacacacatacagaacatCACGAAACACGATTACGTCACTAAGCCTGTTAGTTTGGAAAAGGTGAAGCACTGTGAAACTCCCcaactcccttcctcctcctcctcgtcttccCCCTCTTTAGTCGGAGAGGGGAGACAGGGCCTTGGTGCAGTCGTCCCACTCGTCTGTCTCGAGGTTGTACACCTCCATCGTGTTGAGGAACTCGTTTCCATCGAAGCCGCCCACAGCGTAGATGGTTTCTCCCAGGATGGCCACGCCCGCATTGCTGCGGGAAGAGGTCATGCTACCCAGCATCCTCCACTCGTTGCGGGCGGGGTCGTACACCTCCACACAGCGAAGCGCGTGGGAGCCATCGAAGCCGCCAACAACAAACAGTTTGCCTGGACAGAGTGAGAGACCTCATCAGCAGAAGGACAACAGAATCGCTGAAATTCATAACAGTTTGCTTCTTGTCAACATCTTGTTTCCCACACAACTTCATGTTcttgacacacatacacacacacatacacacagctgatTGCACCGTTCACACCCCCGTTTGTGGTTGTGGGCTTACCTGCATGGACAGCAACGGCGGCCCCCCTGCGAGCCACATTCATGGGGGCTATCAGGGTCCAGGTGTTGTTCTCAGGGTTGTAGCGTTCCACAGTGTTCAGGCAGTTCCACGACTCCGCCCCTCCAATCACGTACATGAAGCCCTCCAACTCACACACTGCTGCCTGGTGCCTCCCTGAAATAGAATTTGCTTTGATGAATACAACTCTCCTAGTTTCCCCCCCAGGCTGCAAATATCACAAGAGCTGTTCTGAGGAATAGTTATCCTACTTTCGGTCTCGTTTTTAAGCATAATGTACTCTTTGCTCCAACAATCCAATTTCCCAGAGGGAATAattaaagcttctttttttttttatttatatatttaaatctatttatatatttaaatctatctatctatctatctatctatctatcgtgGTTAGCTCGCTGAAAAAGATATTATTCAGCTTTATGCCTTTTAGACCATGTTGTAACTGTCAAAGGGAAGGCTCTGAGTGTATGTGGGACTGTGTGGACACGTACTGATGTTAAGGGAGGCACAGTTGGACCAGGTTTTGGTCACAGGGTCAAAAGCGTCACAGTTCTTCAGGCCCTTCTGCCCGCAGGGGTCCGACCCTCCCACAACAAAGAGTTTGTTGTTCAATGAGCAGACCTGCATTGCAGCGGTTGGTCCTCAGCTCTGGCACTTGAGCCCACTCGTCAGCATGTGGATCGTACGTCTCCCCGCAGCTCAGCTCGTCAGAATGTCCATTTGATCCTCCAATCACGTACAGCTGACCCATGAGCACAGCCATCTGAAATCGAGCCCTTGGAGTCCGCATGGGAGCGATGAAGGTCCAGCGGTCCTCTTTGGGGTCATAACACTCCACAGTCCTCAGACACTCTTCTCTGTTGTACCCTCCTGCAGAAACATCAAGGTTACAGTGGAGCTCTGtggtttttcctttttacacAACCTCCATTTTAAACATTAAGTATTTAAGACCCTAATGTCCAGATAAGTTTGGCGTAGACATTGATGGTACTTGGGCTACACAAAGAAACTCAGCGTTCGAAGGTAATTTTTGTCTCTTGAGCCAAGACAGAAGCATGTAGCGTCCCGTGTATCCCAAcctccttacacacacacacacacacacacacacacacacacacacacacacacacacacaca
>TU128371
ACGTATccgctcatacacacacacatacagaacatCACGAAACACGATTACGTCACTAAGCCTGTTAGTTTGGAAAAGGTGAAGCACTGTGAAACTCCCcaactcccttcctcctcctcctcgtcttccCCCTCTTTAGTCGGAGAGGGGAGACAGGGCCTTGGTGCAGTCGTCCCACTCGTCTGTCTCGAGGTTGTACACCTCCATCGTGTTGAGGAACTCGTTTCCATCGAAGCCGCCCACAGCGTAGATGGTTTCTCCCAGGATGGCCACGCCCGCATTGCTGCGGGAAGAGGTCATGCTACCCAGCATCCTCCACTCGTTGCGGGCGGGGTCGTACACCTCCACACAGCGAAGCGCGTGGGAGCCACATTCATGGGGGCTATCAGGGTCCAGGTGTTGTTCTCAGGGTTGTAGCGTTCCACAGTGTTCAGGCAGTTCCACGACTCCGCCCCTCCAATCACGTACATGAAGCCCTCCAACTCACACACTGCTGCCTGGTGCCTCCCTGATGTTAAGGGAGGCACAGTTGGACCAGGTTTTGGTCACAGGGTCAAAAGCGTCACAGTTCTTCAGGCCCTTCTGCCCGCAGGGGTCCGACCCTCCCACAACAAAGAGTTTGTTGTTCAATGAGCAGACAC

Function

symbol description
ivns1abp Involved in RNA splicing; negative regulation of protein ubiquitination; and response to virus. Located in cytosol. Implicated in immunodeficiency 70.

NR:

description
PREDICTED: influenza virus NS1A-binding protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128368 True 1756 lncRNA 0.49 3 13822853 13825269
TU128371 False 641 lncRNA 0.56 3 13822853 13824088

Neighbor

gene id symbol gene type direction distance location
swt1 LOC102799620 coding upstream 2845 13796094 ~ 13820008 (+)
insl5a LOC104957723,LOC104925860,LOC103372744 coding upstream 406854 13413361 ~ 13415999 (+)
LOC120565922 NA coding upstream 453846 13367294 ~ 13369007 (+)
LOC120565910 NA coding upstream 463728 13356372 ~ 13359125 (+)
LOC120565057 NA coding upstream 487755 13328617 ~ 13335098 (+)
hmcn1 hmcn1 coding downstream 31765 13857034 ~ 13947979 (+)
ptgs2b ptgs2 coding downstream 170226 13995495 ~ 13999954 (+)
pdcb pdc,LOC104921827,LOC102780712 coding downstream 199486 14024755 ~ 14028859 (+)
tprb tpr coding downstream 208988 14034257 ~ 14065550 (+)
fcho1 NA coding downstream 256287 14081556 ~ 14144941 (+)
LOC120565805 NA non-coding upstream 75781 13704367 ~ 13747072 (+)
G95148 NA non-coding upstream 308788 13510193 ~ 13514065 (+)
G95139 NA non-coding upstream 335487 13487036 ~ 13487366 (+)
G95114 NA non-coding upstream 421921 13399830 ~ 13400932 (+)
LOC120564967 NA non-coding upstream 447185 13372444 ~ 13375668 (+)
G95177 ivns1abp non-coding downstream 188 13825457 ~ 13828481 (+)
G95179 NA non-coding downstream 5581 13830850 ~ 13835258 (+)
G95236 arpc5,LOC104921830,LOC103367487,LOC103137250 non-coding downstream 127880 13953149 ~ 13954884 (+)
G95239 NA non-coding downstream 143662 13968931 ~ 13971139 (+)
G95287 NA non-coding downstream 319736 14145005 ~ 14145318 (+)
LOC120564965 LOC102299696 other upstream 423109 13390823 ~ 13399744 (+)
LOC120564964 LOC102797871,LOC101481459,LOC102301033,LOC106675533,LOC102797273,LOC102300313,LOC102200286 other upstream 440106 13379398 ~ 13382747 (+)
LOC120565776 NA other upstream 480755 13335734 ~ 13342098 (+)
G95046 NA other upstream 602481 13173025 ~ 13220372 (+)
raver2 raver2 other upstream 722408 13005568 ~ 13100445 (+)
G95460 NA other downstream 794089 14619358 ~ 14621413 (+)
LOC120565380 NA other downstream 864113 14689382 ~ 14704353 (+)
dennd1b NA other downstream 985099 14810368 ~ 14923845 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other downstream 1698660 15523929 ~ 15632812 (+)
kcnn1b LOC104945110,LOC103355562 other downstream 2464554 16289823 ~ 16301000 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G468526 NA non-coding CI01000325 null 9796411 ~ 9799055 (-)