G95236 (arpc5,LOC104921830,LOC103367487,LOC103137250)


Basic Information

Item Value
gene id G95236
gene name arpc5,LOC104921830,LOC103367487,LOC103137250
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13953149 ~ 13954884 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU128472
CCTTGACGTTCTGGTTCTTTGTGTTGATTGGCGGGTTCTTCAGGACTGCTTGTAAAGCCTCCATGACATTCCCTTGTCTGATGAGGGAGTCCACCTCTGCCTCGTCGGGACCCAGCTGGTTTTCTCCTCCGTCCTCCTCGTCCACAAATTTGTTCTCGTCGTACTCATCCACGTCCAGTCGCCTGAAGCGGGCATACACAGTGTTCTTTGACATGTCGGCGGCGGGTTTGGGAGTCGAGTTCTAACTGAGAAGGACGAGAGTTCAAGCTCAAGTCCGgcctttttttaacagtgcTTTTCTTTAATACGGCTGTCACAAACAGGCAGCTTCCTGA

Function

symbol description
arpc5 A structural constituent of cytoskeleton. Contributes to actin filament binding activity. Involved in Arp2/3 complex-mediated actin nucleation and cell migration. Located in extracellular exosome and focal adhesion. Part of Arp2/3 protein complex. Biomarker of lung non-small cell carcinoma and lung squamous cell carcinoma.

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128472 True 335 lncRNA 0.52 2 13953149 13954884

Neighbor

gene id symbol gene type direction distance location
hmcn1 hmcn1 coding upstream 5170 13857034 ~ 13947979 (+)
swt1 LOC102799620 coding upstream 133141 13796094 ~ 13820008 (+)
insl5a LOC104957723,LOC104925860,LOC103372744 coding upstream 537150 13413361 ~ 13415999 (+)
LOC120565922 NA coding upstream 584142 13367294 ~ 13369007 (+)
LOC120565910 NA coding upstream 594024 13356372 ~ 13359125 (+)
ptgs2b ptgs2 coding downstream 40611 13995495 ~ 13999954 (+)
pdcb pdc,LOC104921827,LOC102780712 coding downstream 69871 14024755 ~ 14028859 (+)
tprb tpr coding downstream 79373 14034257 ~ 14065550 (+)
fcho1 NA coding downstream 126672 14081556 ~ 14144941 (+)
acsbg2 acsbg2,LOC103367493 coding downstream 218835 14173719 ~ 14203364 (+)
G95179 NA non-coding upstream 117891 13830850 ~ 13835258 (+)
G95177 ivns1abp non-coding upstream 124668 13825457 ~ 13828481 (+)
G95173 ivns1abp non-coding upstream 127880 13822853 ~ 13825269 (+)
LOC120565805 NA non-coding upstream 206077 13704367 ~ 13747072 (+)
G95148 NA non-coding upstream 439084 13510193 ~ 13514065 (+)
G95239 NA non-coding downstream 14047 13968931 ~ 13971139 (+)
G95287 NA non-coding downstream 190121 14145005 ~ 14145318 (+)
G95297 NA non-coding downstream 251455 14206339 ~ 14208562 (+)
G95299 NA non-coding downstream 265687 14220571 ~ 14222594 (+)
LOC120565959 NA non-coding downstream 303401 14258285 ~ 14263886 (+)
LOC120564965 LOC102299696 other upstream 553405 13390823 ~ 13399744 (+)
LOC120564964 LOC102797871,LOC101481459,LOC102301033,LOC106675533,LOC102797273,LOC102300313,LOC102200286 other upstream 570402 13379398 ~ 13382747 (+)
LOC120565776 NA other upstream 611051 13335734 ~ 13342098 (+)
G95046 NA other upstream 732777 13173025 ~ 13220372 (+)
raver2 raver2 other upstream 852704 13005568 ~ 13100445 (+)
G95460 NA other downstream 664474 14619358 ~ 14621413 (+)
LOC120565380 NA other downstream 734498 14689382 ~ 14704353 (+)
dennd1b NA other downstream 855484 14810368 ~ 14923845 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other downstream 1569045 15523929 ~ 15632812 (+)
kcnn1b LOC104945110,LOC103355562 other downstream 2334939 16289823 ~ 16301000 (+)

Expression


Co-expression Network