LOC120565380


Basic Information

Item Value
gene id LOC120565380
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14689382 ~ 14704353 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU128778
GGCCAAGGTGGAGATCCACCTGCAAAACCAGCAGATCAAACACCAGCTGCAAATACAACAACCACCACACCAGCCCCTCCACAGTGTTCTTACACTGTCAACGCCATCACGTTTGGCTTCCAAATTGACATGAAGAACTCTACCACTGGAAACTACACAATAAAGATTAAAGAAAAGGGACGACCAAAGACTGAAGAAATGTTCACCGTTCATTTCTTCATTCAAAACTCACCACATGAAATCAAAGACCTGAAGCCCT
>TU128779
GCTGGTCTGTGCTGGGATCATCATTTTGGCCAACTGCCAAGGTGGAGATCCACCTGCAAAACCAGCAGATCAAACACCAGCTGCAAATACAACAACCACCACACCAGCCCCTCCACAGTGTTCTTACACTGTCAACGCCATCACGTTTGGCTTCCAAATTGACATGAAGAACTCTACCACTGGAAACTACACAATAAAGATTAAAGAAAAGGGACGACCAAAGACTGAAGAAATGTTCACCGTTCATTTCTTCATTCAAAACTCACCACATGAAATCAAAGACCTGAAGCCCT
>TU128781
GAAAATGGAAAACCCAATGACACCAAGGAACTGTCTGAGCTGGAGCCCTTCACAGACTACAGCTGTACTGGTCAGATCAAGGAACACAACGTCACCATTAAAAAATCTTTCAAGTTCAAGGTTGACTGTGATCTTAAATTAAACATAGAGAATAAAACAACCGATACCTCCATTTATCTGAAATGGAGCACGATCAGTATGAATTGTCAAGATGTCCTTCCTAATCTAAAGAAGCTTTCTTACAACTGCAGTTGTACTCCAACTGCCTCAAAtcagaaacacagaaatacaAGTAAGTACAGTTATTTAAAATAACTTTGCAGTAATGCACTTTTGGAGATTATTTACTGGTCAGTTAACCTAAATAATGAAATATACTGTGGACAATTGAATCATCCACTGTGCTACATGCTAACACTTTAGCATGCTACGTGATGCTAGGTGTAGATAACCTGAGATTGGTGATGTGACATGACATGAAATATGATACATA
>XM_039811168.1
GTGTGGTGTGCGGCTGTACACACCCTAACTCTTCGAAATGGCAGGTCTCTGTGGTCTCAAGATCCTGCTGGTCTGTGCTGGGATCATCATTTTGGCCAACTGCCAAGGTGGAGATCCACCTGCAAAACCAGCAGATCAAACACCAGCTGCAAATACAACAACCACTTCTGCTCCTCCTGCAAGCACCTCACCCTCACCCTCACCTTCACCCTCAACCTTACCCACACCCTCAACCTCAACCACACCAAGCAAGCCATTAGACTCTCAGGCAAACACCACTCAATCCCAGTCTTTACCTCCAACCACCATGTCCAACACCACAGTGACTGCCACCAAAGCCACCACACCAGCCCCTCCACAGTGTTCTTACACTGTCAACGCCATCACGTTTGGCTTCCAAATTGACATGAAGAACTCTACCACTGGAAACTACACAATAAAGATTAAAGAAAAGGGACGACCAAAGACTGAAGAAATGTTCACCGTTCATTTCTTCATTCAAAACTCACCACATGAAATCAAAGACCTGAAGCCCTGTACTGAATATGAGCATAATGTGGCATTTATTGATAGTGCTGGCAAAGAAACATCCTGTAACAGCACTGAAAAGAAAACTTGGACAAATGGAATAAGTGATGGTGACATTACAGATGAAAGCTGCATACCCAGATACGTTTGTTACCATAGTGGTTGGGACATCAGCTCTTCTCTAATTTCATCAAATAATATTACAGCTGAGAAATGCACAAATGAAAGTAAAGTGTTTTGTATCAAACCTGGTTACGATGACATTTGCACAAATTTGACTACAACCATCACTTCAGAAACGTGTTCCGATTATTACCTCACCAGAAGCATCACTCTTGATTTCTTAGAGCCTAGTGAAATAAAACAGCCAAATCCAAATCATCTTCCTgcaataaaaccaaaattacCTGTAAACTGCAGCCATCTCACTATTGATTACACCTGTCAGGAAAATGGAAAACCCAATGACACCAAGGAACTGTCTGAGCTGGAGCCCTTCACAGACTACAGCTGTACTGGTCAGATCAAGGAACACAACGTCACCATTAAAAAATCTTTCAAGTTCAAGGTTGACTGTGATCTTAAATTAAACATAGAGAATAAAACAACCGATACCTCCATTTATCTGAAATGGAGCACGATCAGTATGAATTGTCAAGATGTCCTTCCTAATCTAAAGAAGCTTTCTTACAACTGCAGTTGTACTCCAACTGCCTCAAAtcagaaacacagaaatacaACTAAAAATCTACCATCAGAAGGAACATGTAACATTACTGGACTGGAACCATTCAAAGAATATACCTGTGAAGTCCAACCCATATACAACAACAAGGAAGTTTCCAAACCTCAGACAGTTAGACAGGAGACTGCGATTGGAAcaccaaagaaaataaatacactgaCGGTGAAAGTTCCAGAGAATAACGTGATAACAGTAGCCTGTGATTATAGAGAAGTCAAGTTTAACGGACCTCCGGGACCCATCAATGCACATCTTCTTTATAATGGTATCACTCAGGAGAAGCTGACAAACAATAAATGCGAATTTGTATTCGAAGATCTAAGCTACTCAACGGAATACGAAGTAAAGgtGACTGCTTTCAACGGCCGTTTTCACAGCGACCCCAAGACAGAATCTGTTACCACTCGCTACAATGACAAAGCGGTCATTGATTTTCTggtcttcatcatcatcatcattgctTTTGTGGCCTTGGTTCTGGCAGCCTACAAGATCTACCATTACAGAAAGTCCAAAAAGGATGTGAGAGGGGATGTGATGCTTGAACCAACAGAAATTTATGTTAATGTACCTCGATATAAATACCGTCATAAGGACACACTCTGATGAAGAAAGACCTGA

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko00830 Retinol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU128778 False 259 lncRNA 0.44 3 14695682 14698562
TU128779 False 293 lncRNA 0.45 4 14689382 14698562
TU128781 False 493 lncRNA 0.37 2 14699550 14700145
XM_039811168.1 True 1894 mRNA 0.42 15 14692504 14704353

Neighbor

gene id symbol gene type direction distance location
abhd8b abhd8,LOC103359436 coding upstream 52328 14624279 ~ 14637054 (+)
ano8b ano8,LOC103359425,LOC104965807 coding upstream 70179 14579027 ~ 14619203 (+)
plvapb NA coding upstream 134462 14548589 ~ 14554920 (+)
babam1 babam1 coding upstream 144854 14537576 ~ 14544528 (+)
si:ch73-61d6.3 LOC107392864,LOC108238350,LOC103359431 coding upstream 190808 14480454 ~ 14498574 (+)
axdnd1 axdnd1 coding downstream 244815 14949168 ~ 14961237 (+)
tdrd5 NA coding downstream 261913 14966266 ~ 14984677 (+)
fam163ab fam163a,LOC102222863 coding downstream 296816 15001169 ~ 15026319 (+)
rabgap1l rabgap1l,LOC106574055 coding downstream 322658 15027011 ~ 15153577 (+)
gpr52 gpr52,LOC104944265 coding downstream 368245 15072598 ~ 15078471 (+)
G95447 NA non-coding upstream 50336 14546536 ~ 14639046 (+)
G95372 NA non-coding upstream 320156 14368922 ~ 14369226 (+)
LOC120565959 NA non-coding upstream 425496 14258285 ~ 14263886 (+)
G95299 NA non-coding upstream 466788 14220571 ~ 14222594 (+)
G95297 NA non-coding upstream 480820 14206339 ~ 14208562 (+)
LOC120565827 NA non-coding downstream 82715 14787068 ~ 14791606 (+)
G95492 NA non-coding downstream 174729 14879082 ~ 14879287 (+)
G95493 NA non-coding downstream 219599 14923952 ~ 14925603 (+)
G95496 crb1,LOC102787887,LOC102294192,LOC103365562 non-coding downstream 226159 14930512 ~ 14932081 (+)
LOC120565370 NA non-coding downstream 517780 15222133 ~ 15268185 (+)
G95460 NA other upstream 67969 14619358 ~ 14621413 (+)
LOC120564965 LOC102299696 other upstream 1289638 13390823 ~ 13399744 (+)
LOC120564964 LOC102797871,LOC101481459,LOC102301033,LOC106675533,LOC102797273,LOC102300313,LOC102200286 other upstream 1306635 13379398 ~ 13382747 (+)
LOC120565776 NA other upstream 1347284 13335734 ~ 13342098 (+)
G95046 NA other upstream 1469010 13173025 ~ 13220372 (+)
dennd1b NA other downstream 106015 14810368 ~ 14923845 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other downstream 819576 15523929 ~ 15632812 (+)
kcnn1b LOC104945110,LOC103355562 other downstream 1585470 16289823 ~ 16301000 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other downstream 1616141 16320494 ~ 16376449 (+)
nppc nppc,LOC104932751,LOC103372810 other downstream 3151278 17855631 ~ 17859411 (+)

Expression


Co-expression Network