LOC120565771


Basic Information

Item Value
gene id LOC120565771
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 19387232 ~ 19511208 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU130157
CGGAATTTTATTAGAAGGAATGATCACATTCATTGGTCCTTTACAGATAATCATCCTGTCTGGGTCCTTGAATGCACCAATATGAAGAATTTGCAAATGTCCCACTGCATTACAACATAATTGTGTAGTGacgaaaaatacaaaataaagggCTCACTGTGATGCATTACTAATCTCAAAAAATGTTTAGTCTCTGCCATCATTATAATGCACTGGAAGCAATGGAAACCAATTGCTCCCTAAAGAGTAGAAAATCAACCAAAaaactacaaataaaaaatgtgttttgaagTTGTAAAGTGCAATGAGGGAACAGCGTTTACTCTGATTCAACGGTATGGATACTAAAGTCTGTTCTGAAAGAGCCAAAATATTGACGAGCTTCAAGGTGAATTCAAGGAAATCGTATTGATTTGGGATGTTTATTTGACTCCACTGGTAGTGCAGGACATTCAGCTGCTTTACTCTcactgtgtgtacgtgtgtgttaaAGTGTGAATCACCTCAGACAATTTCTTGACTGATGAATATTGAGTGTTGACATTTCTTTGAATCCGAAGGGCAGTTCAGTGAGCACAGCAAGAACTCAAAAGTGGGTCAGTGTCTGCACGGCCTCTTCATTTAACTTGTGTTTGGCCTGAGCTAGACTGCAAATGCAACAGCCATCATTGTTAATTATTATGTCCCTGACCCCTCCTACCACTCTCTTATGTAATGTTTCCCCCTTGTTTTTCTACCTGCAGAAAGACATGTTTAAAAGTGTGGCAGTGTGTTATGCCCTGCGCTCATGTCGCCCCGGAAAGATGGAGAATTACCCCCCTCCTGTTCTTCTACAAGCCACAGAGGCGGGAAGTAAACGTACCAGATTAGCCTTCACCTGGTGTGGTGCTGTAGGAAGATAAGGCGACGCAGGATAAACTTGGGCCACTGATGGAAAACTTGAGGTGCTGGGAATCAGAGTGAGCAGATGGAGGGAAGCGGAAAAAGGCATGATGTGATGCATGGcaacagagaggaagaagatgGCATCGCTGTAGTAAGCCCCAGAGCCAGCGCTGAAGTGCTTCTGCATGGCCTCCACAATAGGGAATAGCTTCTGTGTGAGAGCCACCACGTCATGGAACAACACCTGCAGATCAACATAGTGGAATCATGTTAGTACAACAAAATACCAACTGTAGTAGAGCTGTGAAATATTAGGAACCACTAAAGATTTGTATGAGCCTATTGGTAGGTACATATAAATCTCTGATTTGACCATAAACATGGAAAGTGCACTACAGACAACTACTTCTCTTGTGCAACCTCTCAAATAAAGCTTTGACTGTCCACAATTAGCAAGAGAACCATGTTGTCttaagaaagagaaaaatagaTATAAGGGTaaacaacaaatgttttttgtatcacACTAGCCTTAAAAGTTATTATGATATATCATATGATGGTCAGACGCTCTTATTGATCTACAACCCAAATTCCATTAAACGCT
>XR_005640283.1
ACTACTACTCTGCTGGAATAGCCTTATCAATCGCACCCTTAGCAATGAGCGGTTTATTAATATTGACAGTAGCTACTCTTCTTTGCTAGCTCTCTGGCTGTACTAAACACTAACTGCACGAACATTTCTCTTTATTTGTGCTCTCTGCTGCTTttgctgctagctagctgtcatTAACTTTAGCTAACGTAACATTAACGGTCGTCCTCAAACGTCTCAGCCTGCCGACATCTTCAGGCCAGGGTTTCTTCTCCGCTAAAGTGCTAGGGAACTGCTTCACTTCACCCACGTCAGAAAGACATGTTTAAAAGTGTGGCAGTGTGTTATGCCCTGCGCTCATGTCGCCCCGGAAAGATGGAGAATTACCCCCCTCCTGTTCTTCTACAAGCCACAGAGGCGGGAAGTAAACGTACCAGATTAGCCTTCACCTGGTGTGGTGCTGTAGGAAGATAAGGCGACGCAGGATAAACTTGGGCCACTGATGGAAAACTTGAGGTGCTGGGAATCAGAGTGAGCAGATGGAGGGAAGCGGAAAAAGGCATGATGTGATGCATGGcaacagagaggaagaagatgGCATCGCTGTAGTAAGCCCCAGAGCCAGCGCTGAAGTGCTTCTGCATGGCCTCCACAATAGGGAATAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130157 True 1492 lncRNA 0.41 2 19488090 19511208
XR_005640283.1 False 645 lncRNA 0.49 3 19387232 19510810

Neighbor

gene id symbol gene type direction distance location
fam43a fam43a,LOC102785697 coding upstream 46176 19338866 ~ 19341056 (+)
htr2b htr2b coding upstream 335264 19044010 ~ 19051968 (+)
LOC120565155 acap2 coding upstream 382951 18950200 ~ 19004281 (+)
ppp1r2 ppp1r2 coding upstream 441418 18920138 ~ 18945814 (+)
LOC120565637 ankub1 coding upstream 469758 18911887 ~ 18917474 (+)
LOC120565772 srsf11,LOC103363396 coding downstream 9734 19520942 ~ 19529494 (+)
cth cth coding downstream 63647 19574855 ~ 19586645 (+)
adgrl2a adgrl2,LOC106923620 coding downstream 645202 20156410 ~ 20256594 (+)
samd13 samd13,LOC103130842 coding downstream 1053767 20564975 ~ 20568112 (+)
dnase2b dnase2b,LOC108234386,LOC107392715 coding downstream 1065315 20576523 ~ 20582264 (+)
G96488 NA non-coding upstream 29 19331692 ~ 19387203 (+)
G96489 NA non-coding upstream 52317 19334176 ~ 19334915 (+)
G96455 NA non-coding upstream 99559 19279469 ~ 19287673 (+)
G96445 psmd1 non-coding upstream 329420 19056341 ~ 19057812 (+)
G96438 psmd1,LOC107550672,LOC106613492 non-coding upstream 357768 19024283 ~ 19029464 (+)
G96613 ptger3 non-coding downstream 165960 19677168 ~ 19683076 (+)
G96610 NA non-coding downstream 172942 19684150 ~ 19685085 (+)
G96616 NA non-coding downstream 239912 19751120 ~ 19751372 (+)
G96648 adgrl4 non-coding downstream 489620 20000828 ~ 20002125 (+)
LOC120565691 NA non-coding downstream 535810 20047018 ~ 20047372 (+)
G96418 tsc22d2 other upstream 601596 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 722119 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 1527821 17855631 ~ 17859411 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other upstream 3010783 16320494 ~ 16376449 (+)
kcnn1b LOC104945110,LOC103355562 other upstream 3086232 16289823 ~ 16301000 (+)
G96513 NA other downstream 19559 19530767 ~ 19531677 (+)
prkacba prkacb other downstream 1037791 20548999 ~ 20564824 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 1900128 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 2043686 21554894 ~ 21557731 (+)
G97093 NA other downstream 2179689 21690897 ~ 21782000 (+)

Expression


Co-expression Network