LOC120565275 (ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898)


Basic Information

Item Value
gene id LOC120565275
gene name ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 21411336 ~ 21441558 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU130941
aggaGCGGCTGAGAAGAGAAGAGCGCATCACAAAGTTTGAGGCTGCAAATGTTCGGACACCGCGGAAACACGTACGGGACACCTGATCAGGTGGTGAGTCAAAAGAACCAGGACTTAACCAGAAACATCTGATGACACTATGCCTGGTAACGACCGTCTGTCATGTCCGCTAAAGAGCCCCATAAATACACTCTGCATTCAATAGACTGAAGATCAAAGTGGATGAAGCCACTTTTCATTTATGACTGACAATTTAACTTTTCAGAACCTTCATTTTCTACCTCTTGTTGTCAAGCGAGGCAGTTTGAACACTTGACAGCTCCGACCCACTTATCACGCAACAAGGGAAAACGTTGCATTTAGCGGGCAACATATACAAAGGTGATGTACTGTTTTATATTCAGGGCCATTGATCCATTGAACTCCTGATCTAATTAGGCCCACACGTGTATGCTAACACACACCTGGTGTTGCTGGCCTCTGCAGATTGTGTCTGACTCTCAGTTCAGTGACACCCAGTTGGGTATTAGAAGTCCATC
>XM_039810911.1
cgctcagcagcagcagcagcagcagtcaggaGCGGCTGAGAAGAGAAGAGCGCATCACAAAGTTTGAGGCTGCAAATGTTCGGACACCGCGGAAACACGTACGGGACACCTGATCAGGTGGTGAGTCAAAAGAACCAGGACTTAACCAGAAACATCTGATGACACTATGCCTGGTAACGACCGTCTGTCATGTCCGCTAAAGAGCCCCATAAATACACTCTGCATTCAATAGACTGAAGATCAAAGTGGATGAAGCCACTTTTCATTTATGACTGACAATTTAACTTTTCAGAACCTTCATTTTCTACCTCTTGTTGTCAAGCGAGGCAGTTTGAACACTTGACAGCTCCGACCCACTTATCACGCAACAAGGGAAAACGTTGCATTTAGCGGGCAACATATACAAAGGTGATGTACTGTTTTATATTCAGGGCCATTGATCCATTGAACTCCTGATCTAATTAGGCCCACACGTGTATGCTAACACACACCTGGTGTTGCTGGCCTCTGCAGATTGTGTCTGACTCTCAGTTCAGTGACACCCAGTTGGGTATTAGAAGTCCATCTGCACACTATTAACTCTCAAAGAGAGCACTCACCTTGACAGTGATCGGACACGTGTTGGTGTGTTTGCATTAGCAGGTGTCATGTCGTTGCTGCTCTGATTGAGAGCGAGAATGAGAGCTGATGTGGCAGACTGGCCCTgataaatactttaaaaacattACATCCTGAGGGTTGGACACTtgaataaaaaagccatagagcTTCATTACACTGTTTGGTCAGTTCCTCAAAATGCGTGATGCTAAAAAGTAGTCCGCTTTAATTGAAAagtgtgcgtgtgcgtatgCATGTGTGCCTGTCACATTGTCAGAGCAGATTAGGGCCAGGCCTTTCTGGGTCATGTCACTTTGACTGACGTAGATTTGACTAAATAATCTGgcaagcagaaaaaaatgtgtgtgcaaGTCCTGCCGTGATCAGAATACACACATTTTAGACAAATACACCACACTCTCTGACCTTGAGGATTGCTCTGCAGTCTTCTTACTTGTTAACTACCTGCTGGCTGTGGCTACCTAACTTCTTATTCAGCCCACATGCCCTTCACCCAACAAACAGggaatacaatataaaattgtAAACATTGTGATAAAACTCCCAATCTCAGTCGGCCATTTCTACACCACCCCTCATGAACAACTTCCCTTTCTTCTCCGCACCTCCTCCCAATACACCAACCATCCAGTCAGTGTGTAAGCCCTGCCTTCGGGCCCCTTGGAGGATGAACAATGTGCCCACACTTGACTACGAGTTGCTGCTGTCCCCGGCCAGCACCTCCCTCCCCGGCAGTCCTgtcggcggcagcagcagccccTCTCTGGCATTGGTTGGGGGGGATTCTGAGCAGCGTACCGCCTTTGCCTTCGTAGGCCTCCTCATGCTTTTCCTGGTCTTCCTGCTGGTCAGGTGCTTCAGGATCTTGCTGGACCCCTACAGCCGCATGCCTGCATCATCCTGGACTGACCACAAGGAGGGGCTGGAGAGGGGCCAGTTTGATTATGCATTGGTGTAAGGTGCTGTAAGGGGGAAATTTCATTGCTCATAGACTTTACAGTCTTTAAGAGCAATTTTAGATGTGGAAATGGACTGTAATAAGAGGGTTTACCTAATGTTGGTGTATGCCTGGTTTATATCACTGTTTTGCAGCCTTTGTACTGGTGTAAATATGAGGCTGCAGGATGCTATGTAAGCATAACAAGTCTGGTTCAACAACAGATCACTGGAATCCCTGTGAGCcaaacatccagatgttggacCATGAAGGACAGAAATAATGAGCTGCACAGCTGCCTTAACCCAACCTACTCTACCCATCAAACATGCTACAACAACACCTTAGGGCTAGGTTTTCCAAACTCCAGAGCTTGCCGGTATTAAAACACAATAAGATTTTGGGAAGATCACCTTCACTCACAACAAAGTTTATAACCTCAAAGCTACATTTATGGAGAGAACACTCGACATGCAGAACACAAGCAGAACTTAAATCAAGGAGTTTACACTTAAGCAGATGCCCCTTTAATGAACCAATGTCCATTGTAAAGCATTCAAGTGTTAAGTGCTGATCAAGGAGCACAAATCCTCACTTTTTTTGGACACTGAGCCTGGAACAGCACTGCAGTCTCAGATGCTTTTTAAGCAGGTAGTTTGTGTCTCCATAAGattttgtctgtgtatgttttgtgtgttactgtgtctaTAACTGAGAAGCCATATTGAAACTATAATCTGTTATTACTGCAAGTAGTGTTTATGTTCACTGGTTCTGTCCTTTGCTTAGTCCGCCTGCCAAGTGTGGTGGTGAAGCAAACAGCAACCTTTAGGCAAGAGAAAGctttatttttctattcttGACTCAAGTTTGGGAGTCTCCTTTTTGCTACCTTTCTGTTCTCTTCCTCTTACTGTATCGATCTTCAGACTGTGGGTTTTTGAGGTAGTCATGCAGCCACGTCTTAGAATGAGGCAAAGCAGGTAGCTTtgcttttcttgtgtttttgtaatgaCATACATAGACTATGGGCTTTGTTTTTGATACACTGGGTTGAATCAGTGTAAATAAAACAaggattttcttcttcttcctgatTTCCACTGATGGCTGGACTGTGTGGAAGCTCCACATTGTTCATGTtggaaagaaataaaataactgCTACTCA
>XM_039810912.1
cgctcagcagcagcagcagcagcagtcaggaGCGGCTGAGAAGAGAAGAGCGCATCACAAAGTTTGAGGCTGCAAATGTTCGGACACCGCGGAAACACGTACGGGACACCTGATCAGGGGTCTCATCAGTGCTTTGAGGAAGTGTCCGGAAGGAGAAATGGAGTGGGCGAGAACTAATGTGGTGAGTCAAAAGAACCAGGACTTAACCAGAAACATCTGATGACACTATGCCTGGTAACGACCGTCTGTCATGTCCGCTAAAGAGCCCCATAAATACACTCTGCATTCAATAGACTGAAGATCAAAGTGGATGAAGCCACTTTTCATTTATGACTGACAATTTAACTTTTCAGAACCTTCATTTTCTACCTCTTGTTGTCAAGCGAGGCAGTTTGAACACTTGACAGCTCCGACCCACTTATCACGCAACAAGGGAAAACGTTGCATTTAGCGGGCAACATATACAAAGGTGATGTACTGTTTTATATTCAGGGCCATTGATCCATTGAACTCCTGATCTAATTAGGCCCACACGTGTATGCTAACACACACCTGGTGTTGCTGGCCTCTGCAGATTGTGTCTGACTCTCAGTTCAGTGACACCCAGTTGGGTATTAGAAGTCCATCTGCACACTATTAACTCTCAAAGAGAGCACTCACCTTGACAGTGATCGGACACGTGTTGGTGTGTTTGCATTAGCAGGTGTCATGTCGTTGCTGCTCTGATTGAGAGCGAGAATGAGAGCTGATGTGGCAGACTGGCCCTgataaatactttaaaaacattACATCCTGAGGGTTGGACACTtgaataaaaaagccatagagcTTCATTACACTGTTTGGTCAGTTCCTCAAAATGCGTGATGCTAAAAAGTAGTCCGCTTTAATTGAAAagtgtgcgtgtgcgtatgCATGTGTGCCTGTCACATTGTCAGAGCAGATTAGGGCCAGGCCTTTCTGGGTCATGTCACTTTGACTGACGTAGATTTGACTAAATAATCTGgcaagcagaaaaaaatgtgtgtgcaaGTCCTGCCGTGATCAGAATACACACATTTTAGACAAATACACCACACTCTCTGACCTTGAGGATTGCTCTGCAGTCTTCTTACTTGTTAACTACCTGCTGGCTGTGGCTACCTAACTTCTTATTCAGCCCACATGCCCTTCACCCAACAAACAGggaatacaatataaaattgtAAACATTGTGATAAAACTCCCAATCTCAGTCGGCCATTTCTACACCACCCCTCATGAACAACTTCCCTTTCTTCTCCGCACCTCCTCCCAATACACCAACCATCCAGTCAGTGTGTAAGCCCTGCCTTCGGGCCCCTTGGAGGATGAACAATGTGCCCACACTTGACTACGAGTTGCTGCTGTCCCCGGCCAGCACCTCCCTCCCCGGCAGTCCTgtcggcggcagcagcagccccTCTCTGGCATTGGTTGGGGGGGATTCTGAGCAGCGTACCGCCTTTGCCTTCGTAGGCCTCCTCATGCTTTTCCTGGTCTTCCTGCTGGTCAGGTGCTTCAGGATCTTGCTGGACCCCTACAGCCGCATGCCTGCATCATCCTGGACTGACCACAAGGAGGGGCTGGAGAGGGGCCAGTTTGATTATGCATTGGTGTAAGGTGCTGTAAGGGGGAAATTTCATTGCTCATAGACTTTACAGTCTTTAAGAGCAATTTTAGATGTGGAAATGGACTGTAATAAGAGGGTTTACCTAATGTTGGTGTATGCCTGGTTTATATCACTGTTTTGCAGCCTTTGTACTGGTGTAAATATGAGGCTGCAGGATGCTATGTAAGCATAACAAGTCTGGTTCAACAACAGATCACTGGAATCCCTGTGAGCcaaacatccagatgttggacCATGAAGGACAGAAATAATGAGCTGCACAGCTGCCTTAACCCAACCTACTCTACCCATCAAACATGCTACAACAACACCTTAGGGCTAGGTTTTCCAAACTCCAGAGCTTGCCGGTATTAAAACACAATAAGATTTTGGGAAGATCACCTTCACTCACAACAAAGTTTATAACCTCAAAGCTACATTTATGGAGAGAACACTCGACATGCAGAACACAAGCAGAACTTAAATCAAGGAGTTTACACTTAAGCAGATGCCCCTTTAATGAACCAATGTCCATTGTAAAGCATTCAAGTGTTAAGTGCTGATCAAGGAGCACAAATCCTCACTTTTTTTGGACACTGAGCCTGGAACAGCACTGCAGTCTCAGATGCTTTTTAAGCAGGTAGTTTGTGTCTCCATAAGattttgtctgtgtatgttttgtgtgttactgtgtctaTAACTGAGAAGCCATATTGAAACTATAATCTGTTATTACTGCAAGTAGTGTTTATGTTCACTGGTTCTGTCCTTTGCTTAGTCCGCCTGCCAAGTGTGGTGGTGAAGCAAACAGCAACCTTTAGGCAAGAGAAAGctttatttttctattcttGACTCAAGTTTGGGAGTCTCCTTTTTGCTACCTTTCTGTTCTCTTCCTCTTACTGTATCGATCTTCAGACTGTGGGTTTTTGAGGTAGTCATGCAGCCACGTCTTAGAATGAGGCAAAGCAGGTAGCTTtgcttttcttgtgtttttgtaatgaCATACATAGACTATGGGCTTTGTTTTTGATACACTGGGTTGAATCAGTGTAAATAAAACAaggattttcttcttcttcctgatTTCCACTGATGGCTGGACTGTGTGGAAGCTCCACATTGTTCATGTtggaaagaaataaaataactgCTACTCA

Function

symbol description
ctxn1 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism.

NR:

description
PREDICTED: cortexin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130941 False 539 lncRNA 0.46 2 21411363 21439395
XM_039810911.1 False 2729 mRNA 0.45 2 21411336 21441558
XM_039810912.1 True 2790 mRNA 0.45 3 21411336 21441558

Neighbor

gene id symbol gene type direction distance location
timm44 timm44,LOC100710737,LOC102216179,LOC102779393,LOC102311498,LOC101473596 coding upstream 18822 21384522 ~ 21392514 (+)
hnrnpm hnrnpm,LOC100701615,LOC102779678 coding upstream 27132 21376432 ~ 21384204 (+)
obscna LOC102302552,LOC103364793,LOC102212669,LOC108230617 coding upstream 102767 21260927 ~ 21308569 (+)
zgc:153738 iqca1 coding upstream 161175 21242345 ~ 21250161 (+)
mindy4 NA coding upstream 184970 21217731 ~ 21226366 (+)
LOC120565175 NA coding downstream 97669 21539227 ~ 21552254 (+)
tmprss9 tmprss9 coding downstream 117645 21559203 ~ 21571799 (+)
enc3 LOC103373679,LOC103393865,LOC104920233,LOC107100952,LOC100702697,LOC102237431 coding downstream 135836 21577394 ~ 21592150 (+)
s1pr4 s1pr4,LOC102777112,LOC100705658,LOC107100766 coding downstream 409484 21851042 ~ 21853412 (+)
ncln ncln,LOC102776228 coding downstream 453912 21895470 ~ 21909198 (+)
G97011 dmap1 non-coding upstream 37803 21372941 ~ 21373533 (+)
G96963 LOC102235645,LOC103464121,LOC107392658,LOC103138531,LOC103371596,LOC106936986,LOC107100776,LOC101155672 non-coding upstream 96816 21310912 ~ 21314520 (+)
G96906 LOC103364786,LOC104920247 non-coding upstream 237029 21127063 ~ 21174307 (+)
G96898 NA non-coding upstream 349032 21061672 ~ 21062304 (+)
G96871 NA non-coding upstream 402026 21005731 ~ 21009310 (+)
G97064 NA non-coding downstream 216992 21658550 ~ 21676349 (+)
G97096 NA non-coding downstream 301855 21743413 ~ 21744681 (+)
G97170 cope non-coding downstream 499547 21941105 ~ 21944561 (+)
G97181 NA non-coding downstream 555855 21997413 ~ 21997743 (+)
LOC120565815 NA non-coding downstream 564217 22005775 ~ 22007353 (+)
prkacba prkacb other upstream 846512 20548999 ~ 20564824 (+)
G96513 NA other upstream 1879659 19530767 ~ 19531677 (+)
G96418 tsc22d2 other upstream 2625700 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 2746223 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 3551925 17855631 ~ 17859411 (+)
lsm7 lsm7,LOC102793261 other downstream 113336 21554894 ~ 21557731 (+)
G97093 NA other downstream 249339 21690897 ~ 21782000 (+)
G97321 NA other downstream 842088 22283646 ~ 22287272 (+)
LOC120565764 LOC103367403 other downstream 1043953 22485511 ~ 22491235 (+)
soat1 soat1,LOC102796196 other downstream 1051399 22492957 ~ 22501015 (+)

Expression


Co-expression Network