LOC120566218


Basic Information

Item Value
gene id LOC120566218
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22571754 ~ 22576548 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU131429
TTCTCACTCCTCGGCTGCCTACAAGGTGTGCTTACACTGGTTGAATTTACTTTTCCGTGACCTCCAGAACAGGTGGTCTCCTATTCTTGGATCTAGTGCATCTTCTTGGATCAGTTGCAGAAACAAGACTTGCAGTACAAAAGGCCACGTGAAGGCCTTTCAACTGGATTGCTGTAAAAATGAACAGGGACCCAAGATGGTCTTGGGATGTGCTGAGACATGAAGAGACAGGAGCAGAAGGAGGTGTGCTTACACTGGTTGAATTACCTTTTCGGTGACCTCAAGAACAGGTGGTCTCCTATTCTTGGATCTAGTGCATCTTCTTGGATCAGTTGCAGAAACAAGACTTGCAGTACAAAACACCATGTCAAGGCATGTGAAACCTTGCTGTAGAGACTGTTCACAGCCAGCCTTGTGTCGATAGTCATAAGAGCAAGAAGTCTTACAAGCATTTTATGATCATTGCCTTTGGAGGCGGGTTTCCTCAAGGATGAGGAAGAACTGGAGCTGTAGCCTGACATGAATGCAGCGGTGAAGACTCTTTGGCCCAGAGGAGCAAGCCTACATGGAAGTGTTTGTGCTAAAATTTTGTGCTTTTGGATGGCGACCAGACAACCAATGGACAACTCATGAATATAAAGAACTGATGTgtcaataaatattaaaataaatacagtgtCTGGTT
>TU131431
TATTTAGTTACGTGATGTCTTTGTAGTTTGATGTAGTGAAGTTATTGAAATTTAGTTGTAAACTCAGGTGGTGACATGCAGTATTTATGTTCATATTGCTGCAGTTGTGCTGTTTTCGATTAAATGTTTCCTAGATAGAAATAATGTAACAGCAGTAACGTTAGGCCTCTAACGTCACCACGTGCCAGTCATTGCACGTGTGGCGATGCTAATTAGCAAACGAGCTAATCTAATCTTACACTTGTATCCACTAAACACAATATTCCCATGACTATATGATGAAATAAATGTTGGTAGGGACATCTGAATTAATGTGAAGAATGCCAACATCTCTGACTGTATGGGACAAAGATTAAAATGTAACGTCAAACTGCTAAATTTAGCTGGACCCTCAAACAGGCACACCTAGGAAAGCATCAGTCTGTCTTATTCTGCACATTCTCCTTGTGCTGCTGTGATGACATTATTTGCTACTCTCGACAAGATGGATAACGATACTTCTAACCCACCAGTTAAATTATCTTAAGACAGACAAATTGATGCATGTTTTTAAGATTTGTTTTGAGTGCTCATGTTGTTGTGTTCCTACAGGTGTGCTTACACTGGTTGAATTTACTTTTCCGTGACCTCCAGAACAGGTGGTCTCCTATTCTTGGATCTAGTGCATCTTCTTGGATCAGTTGCAGAAACAAGACTTGCAGTACAAAAGGCCACGTGAAGGCCTTTCAACTGGATTGCTGTAAAAATGAACAGGGACCCAAGATGGTCTTGGGATGTGCTGAGACATGAAGAGACAGGAGCAGAAGGAGGTGTGCTTACACTGGTTGAATTACCTTTTCGGTGACCTCAAGAACAGGTGGTCTCCTATTCTTGGATCTAGTGCATCTTCTTGGATCAGTTGCAGAAACAAGACTTGCAGTACAAAACACCATGTCAAGGCATGTGAAACCTTGCTGTAGAGACTGTTCACAGCCAGCCTTGTGTCGATAGTCATAAGAGCAAGAAGTCTTACAAGCATTTTATGATCATTGCCTTTGGAGGCGGGTTTCCTCAAGGATGAGGAAGAACTGGAGCTGTAGCCTGACATGAATGCAGCGGTGAAGACTCTTTGGCCCAGAGGAGCAAGCCTACATGGAAGTGTTTGTGCTAAAATTTTGTGCTTTTGGATGGCGACCAGACAACCAATGGACAACTCATGAATATAAAGAACTGATGTgtcaataaatattaaaataaatacagtgtCTGGTT
>XR_005640352.1
CCCATGACTATATGATGAAATAAATGTTGGTAGGGACATCTGAATTAATGTGAAGAATGCCAACATCTCTGACTGTATGGG

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis
ko04115 p53 signaling pathway
ko04218 Cellular senescence
ko04914 Progesterone-mediated oocyte maturation

RNA

RNA id representative length rna type GC content exon number start site end site
TU131429 False 685 lncRNA 0.45 15 22571754 22576548
TU131431 True 1251 lncRNA 0.41 14 22571795 22576548
XR_005640352.1 False 81 snoRNA 0.38 1 22572059 22572139

Neighbor

gene id symbol gene type direction distance location
osbpl9 osbpl9 coding upstream 1454 22530087 ~ 22570300 (+)
abl2 abl2 coding upstream 42745 22501548 ~ 22529009 (+)
si:dkey-21p1.3 NA coding upstream 86594 22458461 ~ 22485160 (+)
LOC120564914 cacna1e,LOC103367400,LOC102302220,LOC102196101,LOC101487658 coding upstream 117757 22360531 ~ 22453997 (+)
acbd6 acbd6,LOC106907417,LOC103138489 coding upstream 312643 22229405 ~ 22259111 (+)
tor3a tor3a coding downstream 649 22577197 ~ 22582655 (+)
calr LOC102308154,LOC102192544,LOC101484884,LOC100701980,LOC107393148,LOC108230540 coding downstream 7658 22584206 ~ 22589319 (+)
eps15 LOC103370402 coding downstream 15095 22591643 ~ 22623535 (+)
ttc39a ttc39a coding downstream 48537 22625085 ~ 22657026 (+)
faf1 faf1,LOC102783815 coding downstream 121532 22698080 ~ 22764088 (+)
G97338 NA non-coding upstream 248899 22322492 ~ 22322855 (+)
G97335 NA non-coding upstream 255396 22313648 ~ 22316358 (+)
G97297 NA non-coding upstream 397361 22158057 ~ 22174393 (+)
G97295 NA non-coding upstream 413796 22156111 ~ 22157958 (+)
G97263 NA non-coding upstream 478380 22091389 ~ 22093374 (+)
G97410 NA non-coding downstream 17948 22594496 ~ 22595277 (+)
LOC120565733 NA non-coding downstream 204059 22780607 ~ 22800145 (+)
G97485 elavl4,LOC107657884 non-coding downstream 289279 22865827 ~ 22870448 (+)
G97489 NA non-coding downstream 337968 22914516 ~ 22918731 (+)
G97537 NA non-coding downstream 747424 23323972 ~ 23324176 (+)
soat1 soat1,LOC102796196 other upstream 70739 22492957 ~ 22501015 (+)
LOC120565764 LOC103367403 other upstream 80519 22485511 ~ 22491235 (+)
G97321 NA other upstream 284482 22283646 ~ 22287272 (+)
G97093 NA other upstream 789754 21690897 ~ 21782000 (+)
lsm7 lsm7,LOC102793261 other upstream 1014023 21554894 ~ 21557731 (+)
rnf11b rnf11 other downstream 80932 22657480 ~ 22676178 (+)
spata6 spata6 other downstream 672581 23249129 ~ 23282671 (+)
LOC120565086 NA other downstream 724258 23300806 ~ 23303691 (+)
pole4 NA other downstream 744916 23321464 ~ 23323484 (+)
LOC120565078 LOC104955513,LOC104923635,LOC103365215,LOC100690174 other downstream 802183 23378731 ~ 23380375 (+)

Expression


Co-expression Network