G97596 (lpl,LOC108280930,LOC105906969)


Basic Information

Item Value
gene id G97596
gene name lpl,LOC108280930,LOC105906969
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23474782 ~ 23477818 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU131697
TGGTTTATCTCTTTATTGAACCTTCCAGGGCtctttatttatacagtgcACTGCATTTCAGTTCATAAAAGTAAATGCACTGAAGCTGGTATGGAGACCAATTTGATTGATCTTTCCAGAGCTGTGTGCATAAAATTACATAACGCTTCAtttagtttataaaaaaaaaaaaaaaaaaaatacagacgaCTATGGAAGCCTTCCTAAATATATTACAGcttaatatacacatatataaatgtacattcaataaatacaatatgaaGTATTCTTGAGATGTATTATGGCTATCATGTAGGCCAGTCCATCACAAATTACCAAGGCTTGCATGAttatttttagttatttttgttatgtttgACCTTTCAAAATATGGGCATGTTGGAGCTTAGTCAATGAGGTAAACTGTTGCAGGTAAGCCACTTTGACCCATTCATGAACTGATAAAGGAGTAATGCATATCCCTGTTGGACCTCAATCTCAATGGATTTAACATCTAAATGGCTGCAGGGGACAGAGAGCCTTTTAAAGTGACCAGTGACACAATAACCAAAATACAATCAAAGAACAAGCAAGGCTTCAAGAGATCAGATATTAACACATTACTCATGttcaaaaacatatatatataatactgaTTAAAAAAGGTATTTACAAAGACCGCTGTGATTCTCCGTACAGTAGACAGTTAATACTTCTTTGGTCCCTGACGATTGTTGGCAATTAGTGGTTCGGTAAAGACAAGCATTAGTGACTAAATAATCAttttgtacatttaaaaaaaaaagaagatgtgCTTAAATTATGCCTATCACTCTGAATCATTTATACATCAACAATAATCCAAGTTCACATAGGCAAAGAAAACACACCACTTCTGGGGTTCAAAATACATCAACATCAGTACAAACAATACATGTGGGCTACAAAAGCATAAACAAATGATTATAAAGATATGCAGCAATATGCACATTATgtggagagacaggagagagctTGTGAGCAGACTAATTTTCAGCACTGTGAATGAGGTTGTGTTGGTTGCACTGAAAGTTGAAGTGATGAAACACAACAGAAGGAaaatcagaaaaacaaaaacagcattcAGTATATGTCCAGTTACTTGCAAAGGCTTTCCCAGTGCCGCTGTGTACTGTCCATCTTTGGCTATGTATGTAGAGATGGATGCTGTGTGCATGATGTGTATTCAAGTGCAACTTCAAGCATCGTTCAGCCCAAAAAGACTGCCACGCATTTTCAGCTTGTGCATCATTTCTCTTTACGGTTCATTTGGTCTTCTTTTGACTTGACAAAGACTCCATCTTCTCCTCCCCTGACGAGGTAGGCAAACTCTCCTTCCTTCGCGTTGAAGATCACCCTGAaatcacacagacagaaaaaaaagtcagttttaAAGTAAAACTCAaattaaaaatggaaacaaatttaaaaatatcccCAGTCTTAAGTGTGACTGGATCTGTTTCTAGTTTATTCTAGATAATCATATGTGACCTTATACATATGACCAAGAACGTACTTGGACTGGGTCTCCCCGGACTTAATGCGCAGCTTTCGGATATGGAACTTTCCACCGCCCCACCAGTCTGACCAGCTGATGAGTGTGTCCTTCTCCCAGCGCAGCTTCACGATCATCAGGTCTCCAATGTCCTCATCGGCGGTGATGAGGAAGGAAAAAGTGGTGTTACCGCTCAGGACCGGCCTGGGAAGTAGAGTATGTGTTTACTTTTTCTTGTAATTTCCacatgcatttctgtgtttttttttatgttaaaaaaaaaaaaagtactgtttAATTTGCATACAGGACAAAGGAAATGTCCTCCTTCTCTCCGTGGGTTCCATACAGAGAAATCTTCATTGGCTGCTCGGTGAAGCTCAGTGAGTCCTTGCTGAAGAAATGCACCTTCACTTGATAATGGAAAACTTGTATGGCATCATTTCACGAGTCTTAAGGTACATCTTGACGCTACGGGTCATGCGGACCTTGTTGATGTTGTAGCCCAGCTTGTTGCAGCGGTTCTTCCTGCAGCTGAGGCACAGACCCTTGTTGAAAGCCTCTCTGGAGTTGCAGCGGTAGGCCAAGCTCTGCTGCTGGGTGTTCAGCAGAGAGTCGATAAACAGATGGATCGAGCGCTCGTGGGAACATTTGACAAGCTGGTCCATAT

Function

symbol description
lpl Predicted to enable apolipoprotein binding activity; lipoprotein lipase activity; and phospholipase activity. Acts upstream of or within definitive hemopoiesis and response to (R)-carnitine. Predicted to be located in extracellular region and plasma membrane. Predicted to be part of chylomicron and very-low-density lipoprotein particle. Predicted to be active in extracellular space. Is expressed in several structures, including digestive system; head; immature eye; midbrain; and ovary. Human ortholog(s) of this gene implicated in Alzheimer's disease; artery disease (multiple); familial hyperlipidemia (multiple); muscular disease; and type 2 diabetes mellitus. Orthologous to human LPL (lipoprotein lipase).

NR:

description
PREDICTED: lipoprotein lipase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131697 True 2189 TUCP 0.39 3 23474782 23477818

Neighbor

gene id symbol gene type direction distance location
si:ch1073-396h14.1 LOC103365213 coding upstream 19999 23419944 ~ 23454783 (+)
ccl44 LOC103365223,LOC103463524,LOC102231954,LOC103138454,LOC103397632 coding upstream 139085 23331778 ~ 23335697 (+)
agbl4 agbl4 coding upstream 228467 22816551 ~ 23246315 (+)
bend5 bend5,LOC102785035 coding upstream 283705 23176507 ~ 23191077 (+)
dmrta2 dmrta2 coding upstream 696591 22775008 ~ 22778191 (+)
fam32a fam32a,LOC103365210 coding downstream 107983 23585801 ~ 23588140 (+)
hdgfl2 LOC103368921 coding downstream 113634 23591452 ~ 23599922 (+)
ap3d1 ap3d1 coding downstream 122498 23600316 ~ 23627747 (+)
LOC120564946 c2cd4c coding downstream 181801 23659619 ~ 23666284 (+)
LOC120565386 LOC104923650,LOC102308979,LOC100710383,LOC103369973,LOC102790487 coding downstream 312268 23790086 ~ 23835654 (+)
G97605 NA non-coding upstream 1141 23473272 ~ 23473641 (+)
G97603 NA non-coding upstream 6665 23467638 ~ 23468117 (+)
G97602 NA non-coding upstream 7789 23466740 ~ 23466993 (+)
G97601 NA non-coding upstream 8122 23465238 ~ 23466660 (+)
G97597 LOC103365214,LOC107393172 non-coding upstream 13414 23460283 ~ 23461368 (+)
G97613 safb2,LOC102778639,LOC102201904,LOC103365207 non-coding downstream 16233 23494051 ~ 23497882 (+)
G97615 NA non-coding downstream 23158 23500976 ~ 23502578 (+)
G97657 NA non-coding downstream 227118 23704936 ~ 23705284 (+)
G97679 NA non-coding downstream 234279 23712097 ~ 23713463 (+)
G97702 NA non-coding downstream 520583 23998401 ~ 24000222 (+)
LOC120565078 LOC104955513,LOC104923635,LOC103365215,LOC100690174 other upstream 94407 23378731 ~ 23380375 (+)
pole4 NA other upstream 151298 23321464 ~ 23323484 (+)
LOC120565086 NA other upstream 171091 23300806 ~ 23303691 (+)
spata6 spata6 other upstream 192111 23249129 ~ 23282671 (+)
rnf11b rnf11 other upstream 798604 22657480 ~ 22676178 (+)
cdc34a cdc34,LOC103368917,LOC104923648,LOC103397164,LOC107393183,LOC103156874 other downstream 153301 23631119 ~ 23650513 (+)
cks2 LOC104918474,LOC108230759,LOC102216377,LOC104949087,LOC105011584 other downstream 726523 24204341 ~ 24208141 (+)
LOC120565649 LOC103373964,LOC107081966 other downstream 1271199 24749017 ~ 24765225 (+)
G98012 dmbx1,LOC103373966,LOC108230579 other downstream 1304100 24781918 ~ 24783881 (+)
elovl1b LOC106963699,LOC101078639 other downstream 1374469 24852287 ~ 24873916 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_01382147_01388079 NA coding CI01000010 null 1382147 ~ 1388431 (+)