G100578 (rpl36,LOC106560598)


Basic Information

Item Value
gene id G100578
gene name rpl36,LOC106560598
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36511245 ~ 36514806 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU135492
CTGGATTTTGTAGTTTGTAGTAAACGTTTATTAAAGCAACAGATTAGTCCTTCTTGGCGGCAGCTTTCCTCATGGCGGCCAGGACGTTGCtcagctcctctctctttctcttagcGCGGATGTGAGTGCCAATCCTCTTCTTGATGAACTTGAGGGCTCTCTTGTCCTTGGACACCTTCAGCAGCTCCATGGCTCGCCTCTCGTACGGCGCGAAGCCACACACTTCACGGATCATGTCCCGGACAAACTTGCTGTGTTTGGTGAGACgCCCGCGGCGGCGGCTGTGTTTGGGAGCAGTCACGTTCTTGGTGACTGGATGGCCTTTGTTCAGGCCAACGGCCATTGGGTAGCGTATAGCCATGTCTGCTGTCTATGATGGCGGTCAAGCCGGAAGGACTGCTGGAGGAGCGCAGCGGCGTAATGAGAGGTTTGACCCGGAAGACACTTCTGCGACGTCGTTAGACGGGGTCATGCAGCGCCCCCTGCCGTCCTGGAAGAGGTACTGCACCGCCATTAGCGCTCCGAGC

Function

symbol description
rpl36 Predicted to be a structural constituent of ribosome. Acts upstream of or within brain development and regulation of cell cycle. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL36 (ribosomal protein L36).

NR:

description
60S ribosomal protein L36

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135492 True 527 lncRNA 0.56 4 36511245 36514806

Neighbor

gene id symbol gene type direction distance location
ctns ctns coding upstream 88770 36409868 ~ 36422475 (+)
b4galt6 b4galt6,LOC104925469 coding upstream 137639 36351943 ~ 36373606 (+)
ttr ttr coding upstream 161515 36343295 ~ 36349730 (+)
LOC120565107 NA coding upstream 183867 36298542 ~ 36327378 (+)
LOC120565109 NA coding upstream 243430 36261939 ~ 36267815 (+)
nfic nfic,LOC102792909 coding downstream 48648 36563454 ~ 36594440 (+)
dohh dohh,LOC102789931 coding downstream 189646 36704452 ~ 36712253 (+)
rsph4a LOC104961853 coding downstream 198569 36713375 ~ 36720899 (+)
lonp1 lonp1 coding downstream 210383 36725189 ~ 36741996 (+)
plpp6 plpp6,LOC103354162,LOC102785296 coding downstream 360841 36875647 ~ 36882393 (+)
G100537 NA non-coding upstream 25553 36483286 ~ 36485692 (+)
G100557 NA non-coding upstream 49775 36459521 ~ 36461470 (+)
G100536 NA non-coding upstream 62097 36424592 ~ 36449148 (+)
G100535 NA non-coding upstream 88116 36422860 ~ 36423129 (+)
G100524 NA non-coding upstream 215752 36295138 ~ 36295493 (+)
G100584 NA non-coding downstream 14996 36529802 ~ 36530875 (+)
LOC120565379 NA non-coding downstream 128100 36642906 ~ 36651890 (+)
G100667 LOC102192127,LOC101475420,LOC102307792 non-coding downstream 159643 36674449 ~ 36677928 (+)
G100668 NA non-coding downstream 163692 36678498 ~ 36678830 (+)
G100699 NA non-coding downstream 239774 36754580 ~ 36754825 (+)
G100568 lmnb2 other upstream 36050 36473538 ~ 36475195 (+)
dsg2.1 NA other upstream 276646 36215464 ~ 36234599 (+)
G100174 calr3 other upstream 2003693 34504643 ~ 34507552 (+)
G100087 NA other upstream 2632914 33875209 ~ 33878331 (+)
LOC120566032 naaladl2,LOC102797677,LOC101487368 other upstream 2748326 33243213 ~ 33762919 (+)
sass6 sass6,LOC102776185 other downstream 81235 36596041 ~ 36611746 (+)
G100671 NA other downstream 180631 36695437 ~ 36698869 (+)
prrc2c NA other downstream 417849 36932655 ~ 36958360 (+)
G100843 NA other downstream 949108 37463914 ~ 37490072 (+)
usp46 usp46 other downstream 2351629 38866435 ~ 38880605 (+)

Expression


Co-expression Network