LOC120564946 (c2cd4c)


Basic Information

Item Value
gene id LOC120564946
gene name c2cd4c
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23659619 ~ 23666284 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810215.1
TTGAGACCGTGAGGGCGCAGAGCAGCGCCGCGGAGCGCACAGGCTTACCCGGGGAGAAGACACCTGTTACTGACGGAGCAAGTGGACAAAGACGTGTGTGTCTCCTTCTGTAGTGCGACAAACCTGACTGCACCTACTCCACACGCCCACACATCCCACTGTCTTGTGGGACCATGTGGGTTCTTGATAAGATCCGTGGGTCGGTGGAGACCGGCGTGCTGCGTCAGGGGGAGAACGGAGACAAGAAAGGCGTCGCCTACAGCAACGTTCTCACCCCCGACAAGATCCCAGACTTTTTCATTCCTCCAAAGCTGGTCAGTGGACCGCCAGAACCTGACATTCACAACGTAAAGCCCAAAGAAGGACTCCAACCCTCAACTTCAGAGCAAATTATCGGCAGTGGGAAGAAGATCAGCAGCCCAAGAAGTCCACGCCTGGTATCCAAGATTGCAGGAGACACCAAAAACTTGCTGAGAGCAGCAAACCGTCACATTATACAGATAGAGAGTGCCGATGATGTTGGAGACACCAATGCAGACCCTGGGTCGCAGACAGCAATGTCCCTGCCTTATGTACCCAAGACTCAAACACCTTATGGCTTTGCAACCCTGAAGGAAAGCCCCCACACTCGCCGTAAAGAGTCACTTTTCCACTGCGAGCATACCAGTCCTATCACCTCCCCAAACCCCCAGAGGAAGACCCAGGGGAGAAGCAGCGACGGGGGAAACCACCTGAACCCAGGTGACTTCAACACTTCTCACATGAATCCGTATCGGTACTTCAGCGGAGGGGAAAGTGACACCTGCTCCTCAGCTGAGTCCTCTCCCTTCAGCTCTCCCCTGCTCTCCCGCTCTGCCTCCCTGCTCAAGATCTTCACCCACGAGACGCAGGCCAAAGTCGGGAAGGTCAAGCGGACGTTCGCTCGCCACAGCTCCCTCTCCACCGACGAGTGCAGCTCTGCCGAGCCCAGCCCCAACATCCAGCGACGGCTCCACGTCCCCTCATTGCACGGTGCCGGAGCGTCAGACCACgggctccatcaggagcacacCATCAACCTGCACAAAGGCGGGACGGTGAGGATCAGCGCCAATTACGATTCCAGCACCTCCCGTCTGCTCATCCGGGTCCTGGTGGCGGAAAGTCTCTACGACAATCACTTTGACATCAAGAGCATCAACTGCTGCGTGTCCGTCTACCTGAACCCGGGCAAGCTGCAGAAGCAAAGGAGCAACATCATCAAGAACAGCCGCAACCCGGTCTTTAACGAAGACTTCTTCTTTGACTCGATAAGCTTGGTTCAGGTGAAGAACCTGTTAGTGAAGTTCAAGGTGATCAACAAAGGCACCAGCCTCAAGAGGGACACCCTGCTGGGAGAGCGAGAGGTGCCTCTACCCAAGCTGCTCTCAGGGGTTTAAAGCCACAGGACCCGGAGGTCAAAGGAGGCAAAAAAACAAGGAATGAAACTTAAATTTGATGCTTGCACTGGTTTCTATTCAAACTGCTCTTTTTATTCCAATAGATGAAAACAGTGAACATTACAATGAAGGTGGAGGTAGTGGAATATTTTCCTAGAAGGAAagtgagtctttttttttttcttttcttttctttgagatctaaaaatgtcaaaaatgaaCATGTTGATGTAGCATACGTGAACGGATGAAGGATTCATGGTGGTAAAGGCTTGCCTCGTTCTATCTCCCAATAATGAAAGCTCATTAAACCAAGCCGGGCTCGACAGCAACAGATGAACTCGACAGATGAAAGGTTTTTTTTCTGGACAGCCAACTTCCTCAGCCCGGTCAGGTTCAAAGGTTTGACGACACCTGTGCATCAGCCTGTCTCGGTATCCTTGCCTGGACTGTGTTCGTCATGTGtggcatggttttattattGTAATGTGGCATAAATCCACAGCAGCACAGGATGTGATTCGACATTACCTACACCGTGTGTTCCGCACAAAGATGCTTTTGTAAATCAGTGCTTTGAAGTGGCAATACATTCTAATGTGCAAATGACCCTTTGATCCCAGTTGCCATGGCCCACTCCTACAGGGGAGGGCGAGGGACAAACAGAGCAGCCACAATAgccacatttacatgcacatcaAAAATGCAAAGTCTTATGAATGCCATTATCCGATTATGTCAGTCTAATTATATTCTTAATAACAGAAAGTAGAACTGCAGTAACATATGTGCTGCCAAAATCTCTACGTTTTGTCTGTAATTTAGAACAATTGAACGTTAAAGTAAAAGGTGTCCTGTGGAAGTTTctagtaaacaaaaaaaaataatttaatatgtacttaatTGCCGTTTggttaaaatctcttgagccTTTTGAAGGACGTGTGGACGTTCCAGCTGCAGTGTGTCAGGCATGCCCCCATCCAGTGTGGGCACCTTGATTAAATTCTGTGCAACTAGGCAACAAGCTCTCGCCACATCTTCGCTCTGCATTCAGACCGGTTGGCGATACCTCTGTGTTATTCTGCACAGATTCTCAATTCCAAGAACAACCAAGACGATTGTTTTTAGTCGGTCACACAGCTTCAGTCAAACATGTCAAATCTGTCTTACTAACATTTGTTTTGATGATGCACCTAAAGAATAGCATTTAACAGATTTCACTGCTTTTTGGTTCATTTTGATAGCAGTGGGACAAGAAACAAAGTGATTAAAAGTCACACTTTTACTGTGTAATCAAATTAAAAAACGCATCCATCATGTTAACAGAATTTAATAGTCCTCAATTTATGCAACCAGGCTGCTGCCTTAGTCACAGTATTGGCAGTGGACAAATACATGCATGTACATTTCTTAAATGTCTCATATAAGAACAACAGAGCACTGGTGTGATCCAGATGCATGGCATGACTATGTCACTGAGTTACTGGTGTTTGCATGACATGCTCAAAGTTTTATGAAACCCTAAagccttactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgagagaaagagagatagatagaaagaaagagtgtgtgtgttttgattagCATGACATTTTGTCCAAAGTAGTTGATTTTCTATGTAAGACGTAGTATTTTGTTAAAATGCTTTTGAGTGGGTTGAAATGTGTGTTGgatttgtactgtatattactacATGTTTACTAGTTTCTACAATTGTCAGCAAAATGCCAATTATGCACCAACGAGTGAGCAGTGCTGATGAGAGGCATTTTAATTATGTCTGTTTTAACTTAATGAAGCCCAGGGGGAAGAGGTGGAAATGTCAGAAAGAAATAAGGAAAACAATATTGTGTTTTGACATGAACAGCAGCTCTTGCCTCGGAGGAGAGCGACTACAGACATAAAAGAAGTTCGAGACATAAGAGTGATGCTAATTACTGAGGTGTCTTACACACTGCCCCATTTTACTTCTGAGAGGATTACTATCACCTGGTGTTTGTAGCTCACTTGTAGCACTGTTCTTGATGTGCTCTATATCCGTTATATACAGTGATACTGCTGGTTGGCTTTGTTATGGTGTGAAAGTCAGTAAACTGTTGTAACCCCTGTTGCAAACATACAGTGCCTGCTCGTAGAGTTATTGTATTTTCTACTCAAGCTTCCTAAATTGTACTGATCGCTGTTGTTACCAAACCCTTTCTGAGGTTTCTTCAAGCATGATTAACATACTTCAGTAGTGTCAGTAATGACTTTCAGTGGATTCATATTGTGCAGTGGTGGGTCGCCTTGTGCTCTGATTCTAGATGAGGATTTCCTGCCGacacaaatgtttaaaataagACATCTGAAATATAGGCGACGTGTTCTGCAAACTGTGTCCTATTGTTTTGAATAACTAATTGCTTTGACTGTTTTCATGTGGCTTATCATTTAATAGAAatgcaggaagaaaaaaaaacaataaaaaaatataccacTTCAGGCCAGGACTTGTCACAGATTCATATTCTGCAAATGGTGGAAAGTTGGGCCCCGTGTCTGAATAGAACGACTTTATAGCATATCTGAAGACTTGTAATATAACTGTTAGACTTTTgagctttttttgttgttgttaatttagggcatttctgcctttattagataagaaagctgagatatgaaagggtgagagagaggggggatgacatgcaggaaaaccatcaGAGTCAAACTCTGGACCTTCCATGTCAAGGAttaaacctctgcatatgtgtgcctgctctacccgctgagctaaccggccacacaCTTTTGAGCTTTAACAAAAGTTTTTCTttgactttctttcttttgcctAAAGATTACAAATCTTTGACAAGCAACCAGTTTTGGACTCCTGTCTCTGAATGGTTTCAGAAAAGGCAGAAACCAAAGACGAAAATGTAGGCTTTGCATTTCACATTTAACAACAGAGCACCATAAAGTTGCATTACTTTTTGCTGTCATGAATAGGGGACTTATTGAATTGGTTTGTGCACTTTGTATTGCTCTTGTGGTGGATTGTGAGCTCAGCTGGAGGCTTCTCTCTAACAGAAATATATTGAGCATTAAGCGGTGATAAGTCCTGACAAGACCccttaaatgtgtttttgaggtagtcacaaaacattttttgtttttgtaaaatgtaaacacTCTTCCCCATTTAACTAGTAGCTTTGCTAGCCAGCGAATGGCCTCAAAATTGTTGGAGAGATTAAAAATGGGAAGATAACTATCGGGGAAAAAATAGGTGTTGTCAGTGGAAACTATGTAGTTGCTACCTAATTCATATAAAGGGGTTattctctgtttttatttctacttCCATTAGTCTAGGTTTAGTCTCCTGCTACCATTAGCATGTTAGCCTGTTATGTTAGAAGTGTAGCTGAAACTGAAGGAAATTTTATTTGGTTGTTTTCACGGAATAGGTAAAACTCACTTTTTtaccgagagttagatgagaagatagataccactctcatatatGTAAGCTACGTAAATACTGAGCTAGAGCCAGGAAGCGATTAGAATTAGCTTAGCGTAAAGATGGAAGATGGTGTGAAATAGCTACCTTGTCTGACTCAGAAGTTAGTGAAAACAATacgcctaccagcacctctaaagctgaTTAATTAACGTGTTAAATTGCAATTGTTTAATTTATACACAAAACGAAATGCAACAATGATAAATTGTGGTTTTATGGGGAGTTAGGCCTACGTACTGTTACTAGTAGCAACCAGTGCCGTGACTTAgcaaactattcttttaaagGTGACATACATAAGTCTTAGACAAGTGGAAATATTGACCTGTTGGTGGCGCTAAATAAAATGTCAGCTGACCTCCAAAAGCAATCAGGATTCTCCCTTTGAGGATCATGAATATGTGTACCAAATGTTATGgcaattcattcaataaatattTCACCCTGGACCACCAAGTGTTGAACCAACAAACAGACAGCAACATACCCAGAATTACACTGATCGTGTGGTTAAAAACAAGGTTGGTTATTTTGGTTGACTTTTGTATGATCCACAGAGGATAACTTTTTATTCAGCCTGGTGGTGGAAATCAGTCCTTGTATCGCTGCACTCAATAGCTGTTTAATTAAACAAAGGGCGGAGAGGCTTGACTGATGACATTTAAAATGAGAATtgagtaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

symbol description
c2cd4c Predicted to be active in cytosol.

NR:

description
PREDICTED: C2 calcium-dependent domain-containing protein 4C

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810215.1 True 5729 mRNA 0.43 2 23659619 23666284

Neighbor

gene id symbol gene type direction distance location
ap3d1 ap3d1 coding upstream 31872 23600316 ~ 23627747 (+)
hdgfl2 LOC103368921 coding upstream 59697 23591452 ~ 23599922 (+)
fam32a fam32a,LOC103365210 coding upstream 71479 23585801 ~ 23588140 (+)
si:ch1073-396h14.1 LOC103365213 coding upstream 204836 23419944 ~ 23454783 (+)
ccl44 LOC103365223,LOC103463524,LOC102231954,LOC103138454,LOC103397632 coding upstream 323922 23331778 ~ 23335697 (+)
LOC120565386 LOC104923650,LOC102308979,LOC100710383,LOC103369973,LOC102790487 coding downstream 123802 23790086 ~ 23835654 (+)
tle5 aes,LOC108430095 coding downstream 170386 23836670 ~ 23880166 (+)
tle2b LOC103463550,LOC105936873,LOC103142606,LOC108230720,LOC101484064,LOC102310211,LOC101064354 coding downstream 247664 23913948 ~ 23998384 (+)
s1pr3a LOC104942240,LOC103398206 coding downstream 467380 24133664 ~ 24137514 (+)
ankrd24 ankrd24,LOC106918341,LOC106947862,LOC102780339,LOC103142601 coding downstream 502074 24168358 ~ 24183028 (+)
G97615 NA non-coding upstream 157041 23500976 ~ 23502578 (+)
G97613 safb2,LOC102778639,LOC102201904,LOC103365207 non-coding upstream 161737 23494051 ~ 23497882 (+)
G97605 NA non-coding upstream 185978 23473272 ~ 23473641 (+)
G97603 NA non-coding upstream 191502 23467638 ~ 23468117 (+)
G97602 NA non-coding upstream 192626 23466740 ~ 23466993 (+)
G97657 NA non-coding downstream 38652 23704936 ~ 23705284 (+)
G97679 NA non-coding downstream 45813 23712097 ~ 23713463 (+)
G97702 NA non-coding downstream 332117 23998401 ~ 24000222 (+)
G97728 NA non-coding downstream 424259 24090543 ~ 24091319 (+)
G97788 odf3l2,LOC104949085 non-coding downstream 541945 24208229 ~ 24209290 (+)
cdc34a cdc34,LOC103368917,LOC104923648,LOC103397164,LOC107393183,LOC103156874 other upstream 9106 23631119 ~ 23650513 (+)
G97596 lpl,LOC108280930,LOC105906969 other upstream 181801 23474782 ~ 23477818 (+)
LOC120565078 LOC104955513,LOC104923635,LOC103365215,LOC100690174 other upstream 279244 23378731 ~ 23380375 (+)
pole4 NA other upstream 336135 23321464 ~ 23323484 (+)
LOC120565086 NA other upstream 355928 23300806 ~ 23303691 (+)
cks2 LOC104918474,LOC108230759,LOC102216377,LOC104949087,LOC105011584 other downstream 538057 24204341 ~ 24208141 (+)
LOC120565649 LOC103373964,LOC107081966 other downstream 1082733 24749017 ~ 24765225 (+)
G98012 dmbx1,LOC103373966,LOC108230579 other downstream 1115634 24781918 ~ 24783881 (+)
elovl1b LOC106963699,LOC101078639 other downstream 1186003 24852287 ~ 24873916 (+)
G98194 NA other downstream 1866541 25532825 ~ 25547089 (+)

Expression


Co-expression Network